Wall clock time and date at job start Mon Mar 30 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47494 * 2 1 4 4 C 1.46496 * 120.00008 * 93.32430 * 3 2 1 5 5 C 1.50700 * 109.46808 * 264.22818 * 4 3 2 6 6 H 1.07994 * 120.00602 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99952 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00093 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47395 * 60.00131 * 9 7 5 11 11 H 1.48498 * 109.47226 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47416 * 300.00081 * 9 7 5 13 13 C 1.34776 * 119.99389 * 273.32410 * 3 2 1 14 14 O 1.21283 * 120.00495 * 3.71930 * 13 3 2 15 15 C 1.50704 * 119.99437 * 183.71170 * 13 3 2 16 16 H 1.09002 * 109.61554 * 29.31917 * 15 13 3 17 17 C 1.53298 * 109.61934 * 268.95986 * 15 13 3 18 18 C 1.52877 * 108.58133 * 165.82966 * 17 15 13 19 19 C 1.52709 * 110.15368 * 54.52393 * 18 17 15 20 20 H 1.09001 * 115.38809 * 127.16641 * 19 18 17 21 21 C 1.53645 * 116.03269 * 269.79586 * 19 18 17 22 22 C 1.49167 * 60.26482 * 111.29504 * 21 19 18 23 23 H 1.09001 * 116.23634 * 106.62974 * 22 21 19 24 24 C 1.52463 * 121.66303 * 250.87215 * 22 21 19 25 25 H 1.09003 * 109.47517 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47690 * 300.00316 * 1 2 3 27 27 H 1.09005 * 109.47208 * 60.00206 * 1 2 3 28 28 H 1.09005 * 109.47422 * 239.99817 * 2 1 3 29 29 H 1.09005 * 109.47208 * 119.99794 * 2 1 3 30 30 H 1.08999 * 109.46801 * 144.23045 * 4 3 2 31 31 H 1.08993 * 109.47351 * 24.22785 * 4 3 2 32 32 H 0.96996 * 120.00283 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.62225 * 285.55562 * 17 15 13 34 34 H 1.09001 * 109.61935 * 46.09713 * 17 15 13 35 35 H 1.08998 * 109.35647 * 174.73797 * 18 17 15 36 36 H 1.08997 * 109.35794 * 294.31559 * 18 17 15 37 37 H 1.09003 * 117.54292 * 219.06162 * 21 19 18 38 38 H 1.09007 * 117.53575 * 4.30741 * 21 19 18 39 39 H 1.08996 * 108.37211 * 288.75792 * 24 22 21 40 40 H 1.08999 * 110.62395 * 169.02286 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3319 2.0473 1.2666 5 6 1.1463 2.8642 1.7114 6 1 0.2488 2.8848 1.1111 7 6 1.2072 3.5853 2.8850 8 7 2.3003 3.5607 3.6160 9 14 -0.2626 4.5973 3.4369 10 1 -1.4353 3.7057 3.6243 11 1 0.0552 5.2726 4.7207 12 1 -0.5767 5.6178 2.4048 13 6 2.1792 2.0390 -1.1653 14 8 1.8562 1.5120 -2.2088 15 6 2.7603 3.4295 -1.1716 16 1 3.4392 3.5462 -0.3269 17 6 1.6301 4.4602 -1.0696 18 6 2.2395 5.8187 -0.7230 19 6 3.3228 6.1832 -1.7356 20 1 3.2143 7.1612 -2.2044 21 6 4.7482 5.7231 -1.3932 22 6 4.0248 5.0999 -2.5392 23 1 4.3613 5.3876 -3.5353 24 6 3.5169 3.6636 -2.4792 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1930 2.7014 1.1296 31 1 2.5617 1.2980 2.0240 32 1 2.3434 4.0682 4.4414 33 1 1.1078 4.5262 -2.0241 34 1 0.9321 4.1617 -0.2874 35 1 1.4590 6.5794 -0.7391 36 1 2.6772 5.7744 0.2742 37 1 5.5668 6.4054 -1.6223 38 1 4.8797 5.1127 -0.4997 39 1 4.3754 2.9935 -2.5229 40 1 2.8552 3.4549 -3.3198 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403562724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:13 Heat of formation + Delta-G solvation = -33.521350 kcal Electronic energy + Delta-G solvation = -19831.541420 eV Core-core repulsion = 17032.066338 eV Total energy + Delta-G solvation = -2799.475082 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94895 -38.22114 -35.15197 -33.09017 -32.46733 -30.51975 -29.98680 -27.04595 -24.99271 -23.03450 -22.90964 -21.91658 -20.78528 -18.50716 -17.84850 -16.62406 -16.33668 -15.73379 -14.93061 -14.40599 -14.24685 -13.81970 -13.45248 -13.34350 -12.99042 -12.61756 -12.27081 -12.20428 -11.92710 -11.57583 -11.41344 -11.37653 -11.09729 -10.95554 -10.83470 -10.59144 -10.54832 -10.45973 -10.00047 -9.92102 -9.63761 -9.40409 -9.28023 -8.77938 -8.51086 -7.67551 -6.17725 -4.23218 3.23335 3.28817 3.30975 3.49586 3.98049 4.11352 4.33730 4.90238 5.09379 5.15023 5.25901 5.39436 5.51387 5.55841 5.73604 5.76447 5.93936 5.95905 5.99678 6.03563 6.06377 6.14768 6.25515 6.30468 6.33658 6.47382 6.52818 6.57658 6.64184 6.66065 6.79482 6.88738 6.94645 7.02361 7.22502 7.60230 7.77962 8.07710 8.38994 8.81048 9.10561 9.43082 10.88978 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.010602 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.097496 B = 2640.457180 C = 3848.164644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 N -0.598 5.598 4 C 0.237 3.763 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.523 3.477 14 O -0.578 6.578 15 C -0.099 4.099 16 H 0.097 0.903 17 C -0.105 4.105 18 C -0.084 4.084 19 C -0.152 4.152 20 H 0.096 0.904 21 C -0.179 4.179 22 C -0.136 4.136 23 H 0.090 0.910 24 C -0.073 4.073 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 1.812 -6.658 7.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.328 5.328 4 C 0.117 3.883 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.311 3.689 14 O -0.460 6.460 15 C -0.120 4.120 16 H 0.115 0.885 17 C -0.143 4.143 18 C -0.121 4.121 19 C -0.170 4.170 20 H 0.114 0.886 21 C -0.216 4.216 22 C -0.154 4.154 23 H 0.109 0.891 24 C -0.110 4.110 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.074 1.594 -6.979 7.453 hybrid contribution -0.723 0.668 0.598 1.152 sum 1.351 2.262 -6.381 6.903 Atomic orbital electron populations 1.22086 0.96548 1.00628 1.02834 1.21204 0.94433 0.83606 1.01168 1.48299 1.63281 1.13059 1.08136 1.19457 0.96688 0.92896 0.79213 1.21398 1.00210 1.28353 1.06748 0.91989 1.24889 0.95925 0.96497 0.96225 1.69904 1.26761 1.41601 1.14619 0.86687 0.82975 0.80543 0.78131 1.20232 1.21219 1.19871 1.20483 0.77926 0.87418 0.83053 1.90558 1.53352 1.69619 1.32437 1.21246 0.98897 0.92547 0.99298 0.88524 1.21535 0.97265 0.93143 1.02336 1.20979 0.96350 0.96830 0.97938 1.22242 0.94095 0.98323 1.02353 0.88591 1.22623 0.95042 1.03611 1.00355 1.21298 1.03328 0.94626 0.96190 0.89135 1.20813 0.99140 0.93353 0.97730 0.93182 0.91439 0.92884 0.91789 0.91263 0.94505 0.94760 0.92534 0.92712 0.88685 0.92071 0.90707 0.89478 0.88432 0.92266 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.22 37.15 0.38 -2.53 16 2 C 0.12 2.24 6.11 -4.04 -0.02 2.21 16 3 N -0.60 -12.64 2.48 -175.06 -0.43 -13.07 16 4 C 0.24 5.50 5.00 -5.20 -0.03 5.47 16 5 C -0.53 -13.07 7.54 -34.44 -0.26 -13.33 16 6 H 0.06 1.57 7.08 -52.49 -0.37 1.20 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -23.78 13.29 55.43 0.74 -23.04 16 9 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 13 C 0.52 11.09 6.62 -10.98 -0.07 11.02 16 14 O -0.58 -13.30 15.74 5.56 0.09 -13.21 16 15 C -0.10 -1.86 1.65 -91.68 -0.15 -2.02 16 16 H 0.10 1.92 4.95 -51.93 -0.26 1.66 16 17 C -0.11 -1.95 5.17 -26.64 -0.14 -2.09 16 18 C -0.08 -1.39 5.83 -26.94 -0.16 -1.55 16 19 C -0.15 -2.21 6.29 -90.91 -0.57 -2.78 16 20 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 21 C -0.18 -2.52 9.56 -28.28 -0.27 -2.79 16 22 C -0.14 -1.96 5.82 -93.26 -0.54 -2.51 16 23 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 24 C -0.07 -1.20 5.00 -27.07 -0.14 -1.34 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.17 7.58 -51.93 -0.39 0.78 16 29 H 0.07 1.20 7.81 -51.93 -0.41 0.79 16 30 H 0.04 0.89 5.97 -51.93 -0.31 0.58 16 31 H 0.03 0.84 7.80 -51.93 -0.40 0.43 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 34 H 0.09 2.01 5.39 -51.93 -0.28 1.73 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.50 7.27 -51.92 -0.38 1.13 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.35 7.65 -51.93 -0.40 0.95 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -26.99 313.66 -8.52 -35.51 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.55 Total: 4.65 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.07 Total: -10.60 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.30 Total: -36.12 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.99 -8.52 -35.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403562724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.994 kcal (2) G-P(sol) polarization free energy of solvation -26.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds