Wall clock time and date at job start Mon Mar 30 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47494 * 2 1 4 4 C 1.46496 * 120.00008 * 93.32430 * 3 2 1 5 5 C 1.50700 * 109.46808 * 264.22818 * 4 3 2 6 6 H 1.07994 * 120.00602 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99952 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00093 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47395 * 60.00131 * 9 7 5 11 11 H 1.48498 * 109.47226 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47416 * 300.00081 * 9 7 5 13 13 C 1.34776 * 119.99389 * 273.32410 * 3 2 1 14 14 O 1.21283 * 120.00495 * 3.71930 * 13 3 2 15 15 C 1.50704 * 119.99437 * 183.71170 * 13 3 2 16 16 H 1.09002 * 109.61554 * 29.31917 * 15 13 3 17 17 C 1.53298 * 109.61934 * 268.95986 * 15 13 3 18 18 C 1.52877 * 108.58133 * 165.82966 * 17 15 13 19 19 C 1.52709 * 110.15368 * 54.52393 * 18 17 15 20 20 H 1.09001 * 115.38809 * 127.16641 * 19 18 17 21 21 C 1.53645 * 116.03269 * 269.79586 * 19 18 17 22 22 C 1.49167 * 60.26482 * 111.29504 * 21 19 18 23 23 H 1.09001 * 116.23634 * 106.62974 * 22 21 19 24 24 C 1.52463 * 121.66303 * 250.87215 * 22 21 19 25 25 H 1.09003 * 109.47517 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47690 * 300.00316 * 1 2 3 27 27 H 1.09005 * 109.47208 * 60.00206 * 1 2 3 28 28 H 1.09005 * 109.47422 * 239.99817 * 2 1 3 29 29 H 1.09005 * 109.47208 * 119.99794 * 2 1 3 30 30 H 1.08999 * 109.46801 * 144.23045 * 4 3 2 31 31 H 1.08993 * 109.47351 * 24.22785 * 4 3 2 32 32 H 0.96996 * 120.00283 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.62225 * 285.55562 * 17 15 13 34 34 H 1.09001 * 109.61935 * 46.09713 * 17 15 13 35 35 H 1.08998 * 109.35647 * 174.73797 * 18 17 15 36 36 H 1.08997 * 109.35794 * 294.31559 * 18 17 15 37 37 H 1.09003 * 117.54292 * 219.06162 * 21 19 18 38 38 H 1.09007 * 117.53575 * 4.30741 * 21 19 18 39 39 H 1.08996 * 108.37211 * 288.75792 * 24 22 21 40 40 H 1.08999 * 110.62395 * 169.02286 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3319 2.0473 1.2666 5 6 1.1463 2.8642 1.7114 6 1 0.2488 2.8848 1.1111 7 6 1.2072 3.5853 2.8850 8 7 2.3003 3.5607 3.6160 9 14 -0.2626 4.5973 3.4369 10 1 -1.4353 3.7057 3.6243 11 1 0.0552 5.2726 4.7207 12 1 -0.5767 5.6178 2.4048 13 6 2.1792 2.0390 -1.1653 14 8 1.8562 1.5120 -2.2088 15 6 2.7603 3.4295 -1.1716 16 1 3.4392 3.5462 -0.3269 17 6 1.6301 4.4602 -1.0696 18 6 2.2395 5.8187 -0.7230 19 6 3.3228 6.1832 -1.7356 20 1 3.2143 7.1612 -2.2044 21 6 4.7482 5.7231 -1.3932 22 6 4.0248 5.0999 -2.5392 23 1 4.3613 5.3876 -3.5353 24 6 3.5169 3.6636 -2.4792 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1930 2.7014 1.1296 31 1 2.5617 1.2980 2.0240 32 1 2.3434 4.0682 4.4414 33 1 1.1078 4.5262 -2.0241 34 1 0.9321 4.1617 -0.2874 35 1 1.4590 6.5794 -0.7391 36 1 2.6772 5.7744 0.2742 37 1 5.5668 6.4054 -1.6223 38 1 4.8797 5.1127 -0.4997 39 1 4.3754 2.9935 -2.5229 40 1 2.8552 3.4549 -3.3198 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403562724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:13 Heat of formation + Delta-G solvation = -46.150560 kcal Electronic energy + Delta-G solvation = -19832.089064 eV Core-core repulsion = 17032.066338 eV Total energy + Delta-G solvation = -2800.022726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46473 -39.66986 -36.92050 -34.77967 -34.13595 -31.98887 -31.48403 -28.95022 -26.40891 -24.83287 -24.46441 -23.36262 -21.99904 -20.01525 -19.35448 -18.51442 -17.98237 -17.30803 -16.53204 -16.08591 -15.87938 -15.22864 -14.87935 -14.80027 -14.44770 -14.27173 -14.05869 -13.76543 -13.41049 -13.29948 -12.97783 -12.90524 -12.75059 -12.62478 -12.30654 -12.18687 -11.99029 -11.92111 -11.69071 -11.58771 -11.30169 -10.71292 -10.59682 -10.51925 -10.31252 -9.45236 -8.15829 -6.26465 1.42582 1.44313 1.50349 1.78239 2.33407 2.47453 2.92904 3.15146 3.64008 3.78945 3.86526 4.07289 4.17657 4.22049 4.28733 4.40838 4.43346 4.56078 4.59739 4.64577 4.74806 4.79848 4.87476 4.96392 4.97688 5.03105 5.08496 5.17063 5.21020 5.27662 5.33158 5.36307 5.39803 5.49466 5.53845 5.71830 5.90595 6.11171 6.58758 6.85938 7.34566 7.46198 8.90083 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.010602 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.097496 B = 2640.457180 C = 3848.164644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 N -0.602 5.602 4 C 0.253 3.747 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.919 5.919 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.517 3.483 14 O -0.596 6.596 15 C -0.095 4.095 16 H 0.083 0.917 17 C -0.101 4.101 18 C -0.080 4.080 19 C -0.154 4.154 20 H 0.123 0.877 21 C -0.176 4.176 22 C -0.134 4.134 23 H 0.118 0.882 24 C -0.068 4.068 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.266 0.734 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 2.707 -7.567 8.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 N -0.331 5.331 4 C 0.132 3.868 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.172 4.172 8 N -0.558 5.558 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.306 3.694 14 O -0.479 6.479 15 C -0.116 4.116 16 H 0.101 0.899 17 C -0.139 4.139 18 C -0.118 4.118 19 C -0.172 4.172 20 H 0.141 0.859 21 C -0.213 4.213 22 C -0.152 4.152 23 H 0.135 0.865 24 C -0.106 4.106 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.046 2.478 -7.892 8.522 hybrid contribution -0.723 0.306 0.880 1.179 sum 1.324 2.785 -7.012 7.660 Atomic orbital electron populations 1.21982 0.95744 1.02326 1.00994 1.21429 0.95105 0.82487 1.02139 1.48346 1.63289 1.14023 1.07479 1.19132 0.95863 0.92177 0.79646 1.21461 1.00128 1.28228 1.06514 0.92850 1.25479 0.97932 0.97405 0.96345 1.69990 1.28266 1.42529 1.15019 0.85859 0.80272 0.79375 0.77800 1.20134 1.20997 1.19227 1.20915 0.77584 0.88189 0.82677 1.90537 1.54302 1.70260 1.32836 1.21227 0.98829 0.91263 1.00248 0.89910 1.21452 0.96715 0.94259 1.01467 1.20912 0.97401 0.95929 0.97556 1.22271 0.93419 0.99502 1.01976 0.85924 1.22652 0.95652 1.03606 0.99348 1.21311 1.03324 0.92941 0.97659 0.86451 1.20771 0.98714 0.95329 0.95792 0.89768 0.93209 0.94564 0.91177 0.89878 0.95633 0.96113 0.92522 0.92174 0.91628 0.90751 0.93008 0.86816 0.90537 0.92117 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 10.22 71.98 0.74 -4.62 16 2 C 0.11 4.12 6.11 86.38 0.53 4.65 16 3 N -0.60 -25.77 2.48 -826.16 -2.05 -27.82 16 4 C 0.25 11.96 5.00 85.63 0.43 12.39 16 5 C -0.52 -26.35 7.54 25.60 0.19 -26.16 16 6 H 0.05 2.75 7.08 -2.91 -0.02 2.73 16 7 C 0.03 1.47 5.46 84.66 0.46 1.93 16 8 N -0.92 -49.55 13.29 21.45 0.28 -49.27 16 9 Si 0.94 41.09 29.54 68.60 2.03 43.11 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 C 0.52 22.15 6.62 87.66 0.58 22.73 16 14 O -0.60 -27.44 15.74 -3.04 -0.05 -27.49 16 15 C -0.09 -3.60 1.65 -11.48 -0.02 -3.61 16 16 H 0.08 3.38 4.95 -2.39 -0.01 3.37 16 17 C -0.10 -3.76 5.17 30.65 0.16 -3.60 16 18 C -0.08 -2.61 5.83 30.46 0.18 -2.44 16 19 C -0.15 -4.09 6.29 -10.98 -0.07 -4.16 16 20 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 21 C -0.18 -4.56 9.56 29.59 0.28 -4.28 16 22 C -0.13 -3.54 5.82 -12.50 -0.07 -3.61 16 23 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 24 C -0.07 -2.20 5.00 30.37 0.15 -2.04 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 2.52 7.58 -2.38 -0.02 2.50 16 29 H 0.08 2.83 7.81 -2.38 -0.02 2.81 16 30 H 0.03 1.28 5.97 -2.39 -0.01 1.27 16 31 H 0.02 1.04 7.80 -2.39 -0.02 1.02 16 32 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 34 H 0.07 2.82 5.39 -2.39 -0.01 2.81 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 37 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.08 2.32 7.27 -2.38 -0.02 2.31 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 2.40 7.65 -2.39 -0.02 2.38 16 Total: -1.00 -57.16 313.66 4.76 -52.40 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.01 Total: 21.88 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.54 Total: -12.82 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -1.76 Total: -77.09 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -57.16 4.76 -52.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403562724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.254 kcal (2) G-P(sol) polarization free energy of solvation -57.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds