Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46897 * 2 1 4 4 C 1.37098 * 120.00228 * 83.21313 * 3 2 1 5 5 H 1.08000 * 120.00027 * 171.12432 * 4 3 2 6 6 C 1.38949 * 119.99645 * 351.12653 * 4 3 2 7 7 N 1.31411 * 120.00476 * 0.63613 * 6 4 3 8 8 Si 1.86805 * 119.99799 * 180.64193 * 6 4 3 9 9 H 1.48494 * 109.47268 * 89.99362 * 8 6 4 10 10 H 1.48499 * 109.47082 * 209.99746 * 8 6 4 11 11 H 1.48500 * 109.46948 * 329.99305 * 8 6 4 12 12 C 1.34777 * 119.99842 * 263.21091 * 3 2 1 13 13 O 1.21286 * 120.00078 * 355.51295 * 12 3 2 14 14 C 1.50703 * 120.00063 * 175.51866 * 12 3 2 15 15 C 1.52997 * 112.85212 * 185.77191 * 14 12 3 16 16 C 1.53784 * 113.61120 * 48.80229 * 15 14 12 17 17 C 1.53963 * 87.01814 * 220.05067 * 16 15 14 18 18 C 1.53779 * 87.11096 * 25.36257 * 17 16 15 19 19 C 1.53782 * 113.61223 * 54.57688 * 14 12 3 20 20 C 1.53961 * 87.01882 * 220.05039 * 19 14 12 21 21 C 1.53779 * 113.61089 * 316.96950 * 14 12 3 22 22 H 1.08996 * 109.47286 * 185.51726 * 1 2 3 23 23 H 1.09001 * 109.46735 * 305.52077 * 1 2 3 24 24 H 1.09002 * 109.46701 * 65.51657 * 1 2 3 25 25 H 1.08997 * 109.47233 * 239.99747 * 2 1 3 26 26 H 1.08994 * 109.47183 * 119.99634 * 2 1 3 27 27 H 0.97001 * 120.00158 * 180.02562 * 7 6 4 28 28 H 1.08996 * 112.85231 * 179.97438 * 15 14 12 29 29 H 1.09000 * 113.61379 * 334.56497 * 16 15 14 30 30 H 1.09001 * 113.61431 * 105.47277 * 16 15 14 31 31 H 1.09002 * 113.53475 * 270.80897 * 17 16 15 32 32 H 1.08996 * 113.74172 * 139.94941 * 17 16 15 33 33 H 1.09002 * 113.61349 * 220.09007 * 18 17 16 34 34 H 1.08996 * 113.69100 * 89.20276 * 18 17 16 35 35 H 1.09002 * 113.61721 * 334.56469 * 19 14 12 36 36 H 1.08998 * 113.61636 * 105.47827 * 19 14 12 37 37 H 1.08998 * 113.53291 * 270.81604 * 20 19 14 38 38 H 1.08997 * 113.74604 * 139.94533 * 20 19 14 39 39 H 1.09002 * 113.61532 * 254.53090 * 21 14 12 40 40 H 1.09002 * 113.61564 * 25.43515 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1145 2.0744 1.1790 5 1 2.6058 3.0359 1.2015 6 6 1.5801 1.5396 2.3448 7 7 0.9935 0.3640 2.3198 8 14 1.6953 2.4921 3.9476 9 1 0.5006 3.3618 4.0936 10 1 1.7568 1.5401 5.0857 11 1 2.9203 3.3314 3.9377 12 6 2.3730 1.9706 -1.1590 13 8 2.3657 1.3329 -2.1907 14 6 2.7789 3.4219 -1.1731 15 6 3.0122 3.9599 -2.5863 16 6 1.8748 3.6288 -3.5669 17 6 2.9673 3.3660 -4.6196 18 6 3.9140 3.0596 -3.4471 19 6 3.9163 3.7529 -0.1924 20 6 3.1572 5.0548 0.1228 21 6 1.8771 4.3221 -0.3123 22 1 -0.3634 -1.0229 0.0988 23 1 -0.3633 0.5971 0.8364 24 1 -0.3633 0.4259 -0.9353 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 0.6200 -0.0091 3.1336 28 1 3.3053 5.0097 -2.5965 29 1 1.3084 2.7384 -3.2940 30 1 1.2379 4.4818 -3.8010 31 1 3.2476 4.2535 -5.1868 32 1 2.7659 2.5037 -5.2551 33 1 4.9209 3.4539 -3.5845 34 1 3.9072 2.0137 -3.1405 35 1 3.9773 3.0676 0.6530 36 1 4.8786 3.9143 -0.6782 37 1 3.4280 5.8852 -0.5293 38 1 3.1684 5.3247 1.1787 39 1 1.1955 4.9421 -0.8946 40 1 1.3796 3.7925 0.5003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455002096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = 46.469491 kcal Electronic energy + Delta-G solvation = -20448.581645 eV Core-core repulsion = 17652.575225 eV Total energy + Delta-G solvation = -2796.006419 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53168 -37.33886 -36.53881 -34.76300 -31.37701 -29.64051 -26.98489 -25.51156 -24.82939 -24.29524 -23.72196 -21.43134 -19.59575 -19.20541 -18.35078 -17.19937 -15.45519 -14.98706 -14.63567 -14.17516 -14.11997 -13.83471 -13.49406 -12.98846 -12.47367 -12.37552 -11.99193 -11.75598 -11.63768 -11.35948 -11.17576 -10.98776 -10.87804 -10.84235 -10.61685 -10.47886 -10.25978 -9.90458 -9.88089 -9.82091 -9.55182 -9.24616 -8.99815 -8.69270 -7.83750 -7.68987 -6.22213 -3.87008 3.07171 3.17496 3.18264 3.90128 4.04009 4.85243 4.99188 5.22928 5.28129 5.30933 5.42275 5.49418 5.50394 5.65680 6.02504 6.08579 6.11410 6.19185 6.32121 6.43315 6.47018 6.49729 6.52448 6.57496 6.70201 6.79227 6.82380 6.88193 6.89379 6.99391 7.04440 7.13251 7.24971 7.34819 7.39435 7.60980 7.83609 7.90827 8.50529 9.09170 9.62741 10.02075 10.62978 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025580 B = 0.009520 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.357398 B = 2940.564799 C = 3688.692439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.130 3.870 3 N -0.442 5.442 4 C -0.340 4.340 5 H 0.130 0.870 6 C 0.026 3.974 7 N -0.865 5.865 8 Si 0.917 3.083 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.469 3.531 13 O -0.603 6.603 14 C -0.074 4.074 15 C -0.073 4.073 16 C -0.130 4.130 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.146 4.146 22 H 0.031 0.969 23 H 0.083 0.917 24 H 0.011 0.989 25 H 0.034 0.966 26 H 0.107 0.893 27 H 0.264 0.736 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 6.096 -2.791 7.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 N -0.159 5.159 4 C -0.467 4.467 5 H 0.147 0.853 6 C -0.176 4.176 7 N -0.506 5.506 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.258 3.742 13 O -0.491 6.491 14 C -0.077 4.077 15 C -0.092 4.092 16 C -0.167 4.167 17 C -0.175 4.175 18 C -0.173 4.173 19 C -0.176 4.176 20 C -0.178 4.178 21 C -0.183 4.183 22 H 0.050 0.950 23 H 0.101 0.899 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.125 0.875 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.238 5.616 -3.099 6.793 hybrid contribution -0.069 0.530 0.898 1.046 sum 2.169 6.146 -2.201 6.879 Atomic orbital electron populations 1.22027 0.97175 0.99779 0.99671 1.21428 0.94075 0.83161 1.00558 1.43803 1.54944 1.11850 1.05265 1.20597 1.36090 1.04871 0.85175 0.85297 1.25319 0.96308 0.96415 0.99603 1.70265 1.36543 1.15983 1.27772 0.86063 0.78924 0.79220 0.81454 1.20276 1.20825 1.19348 1.19736 0.82912 0.88207 0.83329 1.90390 1.60389 1.65980 1.32377 1.21540 0.98026 0.93749 0.94396 1.22009 0.97956 0.97686 0.91506 1.23005 0.96075 1.01739 0.95894 1.22680 0.98359 1.00056 0.96449 1.23171 0.95327 1.03149 0.95646 1.23306 0.96128 0.97941 1.00247 1.22815 0.97893 0.96651 1.00470 1.23529 0.96118 0.97409 1.01276 0.94982 0.89883 0.96943 0.94769 0.87514 0.92485 0.90395 0.88032 0.93567 0.91927 0.92171 0.93854 0.86821 0.86920 0.92604 0.91292 0.91938 0.92994 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.33 37.16 0.35 -2.66 16 2 C 0.13 3.21 5.52 -4.04 -0.02 3.18 16 3 N -0.44 -10.79 2.64 -114.81 -0.30 -11.09 16 4 C -0.34 -8.02 6.17 -14.93 -0.09 -8.11 16 5 H 0.13 2.83 2.54 -52.49 -0.13 2.69 16 6 C 0.03 0.62 5.22 -17.47 -0.09 0.53 16 7 N -0.87 -21.14 7.26 55.50 0.40 -20.73 16 8 Si 0.92 18.61 29.55 -169.99 -5.02 13.59 16 9 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 12 C 0.47 11.04 6.41 -10.98 -0.07 10.97 16 13 O -0.60 -15.20 11.07 5.55 0.06 -15.14 16 14 C -0.07 -1.46 0.79 -154.85 -0.12 -1.58 16 15 C -0.07 -1.30 3.14 -89.81 -0.28 -1.59 16 16 C -0.13 -2.35 7.26 -25.82 -0.19 -2.54 16 17 C -0.14 -2.27 8.09 -25.82 -0.21 -2.48 16 18 C -0.14 -2.44 7.24 -25.92 -0.19 -2.63 16 19 C -0.14 -2.53 6.67 -25.82 -0.17 -2.70 16 20 C -0.14 -2.28 7.36 -25.82 -0.19 -2.47 16 21 C -0.15 -2.72 6.67 -25.92 -0.17 -2.90 16 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 2.07 6.03 -51.93 -0.31 1.75 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.85 7.18 -51.93 -0.37 0.48 16 26 H 0.11 2.74 5.92 -51.93 -0.31 2.43 16 27 H 0.26 6.20 8.31 -40.82 -0.34 5.87 16 28 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 29 H 0.10 2.17 5.87 -51.93 -0.31 1.86 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.11 2.41 5.47 -51.93 -0.28 2.12 16 35 H 0.11 2.26 5.33 -51.93 -0.28 1.98 16 36 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.07 1.00 7.72 -51.93 -0.40 0.60 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.13 2.69 4.82 -51.93 -0.25 2.44 16 LS Contribution 291.63 15.07 4.39 4.39 Total: -1.00 -25.26 291.63 -7.89 -33.15 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.97 Total: 10.79 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.45 Total: -14.97 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.10 Total: -31.82 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.06 Total: -15.14 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.26 -7.89 -33.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455002096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.619 kcal (2) G-P(sol) polarization free energy of solvation -25.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds