Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46897 * 2 1 4 4 C 1.37098 * 120.00228 * 83.21313 * 3 2 1 5 5 H 1.08000 * 120.00027 * 171.12432 * 4 3 2 6 6 C 1.38949 * 119.99645 * 351.12653 * 4 3 2 7 7 N 1.31411 * 120.00476 * 0.63613 * 6 4 3 8 8 Si 1.86805 * 119.99799 * 180.64193 * 6 4 3 9 9 H 1.48494 * 109.47268 * 89.99362 * 8 6 4 10 10 H 1.48499 * 109.47082 * 209.99746 * 8 6 4 11 11 H 1.48500 * 109.46948 * 329.99305 * 8 6 4 12 12 C 1.34777 * 119.99842 * 263.21091 * 3 2 1 13 13 O 1.21286 * 120.00078 * 355.51295 * 12 3 2 14 14 C 1.50703 * 120.00063 * 175.51866 * 12 3 2 15 15 C 1.52997 * 112.85212 * 185.77191 * 14 12 3 16 16 C 1.53784 * 113.61120 * 48.80229 * 15 14 12 17 17 C 1.53963 * 87.01814 * 220.05067 * 16 15 14 18 18 C 1.53779 * 87.11096 * 25.36257 * 17 16 15 19 19 C 1.53782 * 113.61223 * 54.57688 * 14 12 3 20 20 C 1.53961 * 87.01882 * 220.05039 * 19 14 12 21 21 C 1.53779 * 113.61089 * 316.96950 * 14 12 3 22 22 H 1.08996 * 109.47286 * 185.51726 * 1 2 3 23 23 H 1.09001 * 109.46735 * 305.52077 * 1 2 3 24 24 H 1.09002 * 109.46701 * 65.51657 * 1 2 3 25 25 H 1.08997 * 109.47233 * 239.99747 * 2 1 3 26 26 H 1.08994 * 109.47183 * 119.99634 * 2 1 3 27 27 H 0.97001 * 120.00158 * 180.02562 * 7 6 4 28 28 H 1.08996 * 112.85231 * 179.97438 * 15 14 12 29 29 H 1.09000 * 113.61379 * 334.56497 * 16 15 14 30 30 H 1.09001 * 113.61431 * 105.47277 * 16 15 14 31 31 H 1.09002 * 113.53475 * 270.80897 * 17 16 15 32 32 H 1.08996 * 113.74172 * 139.94941 * 17 16 15 33 33 H 1.09002 * 113.61349 * 220.09007 * 18 17 16 34 34 H 1.08996 * 113.69100 * 89.20276 * 18 17 16 35 35 H 1.09002 * 113.61721 * 334.56469 * 19 14 12 36 36 H 1.08998 * 113.61636 * 105.47827 * 19 14 12 37 37 H 1.08998 * 113.53291 * 270.81604 * 20 19 14 38 38 H 1.08997 * 113.74604 * 139.94533 * 20 19 14 39 39 H 1.09002 * 113.61532 * 254.53090 * 21 14 12 40 40 H 1.09002 * 113.61564 * 25.43515 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1145 2.0744 1.1790 5 1 2.6058 3.0359 1.2015 6 6 1.5801 1.5396 2.3448 7 7 0.9935 0.3640 2.3198 8 14 1.6953 2.4921 3.9476 9 1 0.5006 3.3618 4.0936 10 1 1.7568 1.5401 5.0857 11 1 2.9203 3.3314 3.9377 12 6 2.3730 1.9706 -1.1590 13 8 2.3657 1.3329 -2.1907 14 6 2.7789 3.4219 -1.1731 15 6 3.0122 3.9599 -2.5863 16 6 1.8748 3.6288 -3.5669 17 6 2.9673 3.3660 -4.6196 18 6 3.9140 3.0596 -3.4471 19 6 3.9163 3.7529 -0.1924 20 6 3.1572 5.0548 0.1228 21 6 1.8771 4.3221 -0.3123 22 1 -0.3634 -1.0229 0.0988 23 1 -0.3633 0.5971 0.8364 24 1 -0.3633 0.4259 -0.9353 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 0.6200 -0.0091 3.1336 28 1 3.3053 5.0097 -2.5965 29 1 1.3084 2.7384 -3.2940 30 1 1.2379 4.4818 -3.8010 31 1 3.2476 4.2535 -5.1868 32 1 2.7659 2.5037 -5.2551 33 1 4.9209 3.4539 -3.5845 34 1 3.9072 2.0137 -3.1405 35 1 3.9773 3.0676 0.6530 36 1 4.8786 3.9143 -0.6782 37 1 3.4280 5.8852 -0.5293 38 1 3.1684 5.3247 1.1787 39 1 1.1955 4.9421 -0.8946 40 1 1.3796 3.7925 0.5003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455002096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = 35.103489 kcal Electronic energy + Delta-G solvation = -20449.074512 eV Core-core repulsion = 17652.575225 eV Total energy + Delta-G solvation = -2796.499286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.10981 -38.97573 -38.11701 -36.55155 -33.22630 -31.54559 -28.45572 -26.94560 -26.63208 -25.72526 -25.29714 -23.16168 -21.29360 -20.67926 -19.98960 -18.90249 -17.14995 -16.48614 -16.16106 -15.93198 -15.72629 -15.58820 -15.02309 -14.59488 -14.29563 -13.99892 -13.57208 -13.35633 -13.22270 -12.96863 -12.79351 -12.56816 -12.42872 -12.39954 -12.23315 -12.05765 -11.97769 -11.71928 -11.30821 -11.25483 -11.12433 -10.69920 -10.63329 -10.37347 -9.60581 -9.58018 -8.03593 -5.72554 1.45760 1.51312 1.60121 2.13013 2.34223 3.11189 3.24022 3.74171 3.83353 3.89794 4.03992 4.11989 4.12986 4.31188 4.45767 4.57403 4.69287 4.83474 4.89175 4.92007 4.94810 5.01606 5.03913 5.07460 5.12831 5.14974 5.19625 5.23855 5.31527 5.39283 5.42414 5.52626 5.60875 5.67360 5.79343 5.87067 5.95161 6.05788 6.63538 7.25764 7.78682 8.18266 8.83354 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025580 B = 0.009520 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.357398 B = 2940.564799 C = 3688.692439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.134 3.866 3 N -0.456 5.456 4 C -0.349 4.349 5 H 0.148 0.852 6 C -0.018 4.018 7 N -0.891 5.891 8 Si 0.978 3.022 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.255 1.255 12 C 0.455 3.545 13 O -0.628 6.628 14 C -0.079 4.079 15 C -0.067 4.067 16 C -0.136 4.136 17 C -0.126 4.126 18 C -0.141 4.141 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.149 4.149 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.002 0.998 25 H 0.018 0.982 26 H 0.095 0.905 27 H 0.262 0.738 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 9.085 -2.783 10.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.010 3.990 3 N -0.174 5.174 4 C -0.475 4.475 5 H 0.164 0.836 6 C -0.218 4.218 7 N -0.532 5.532 8 Si 0.803 3.197 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.179 1.179 12 C 0.246 3.754 13 O -0.518 6.518 14 C -0.082 4.082 15 C -0.086 4.086 16 C -0.173 4.173 17 C -0.163 4.163 18 C -0.178 4.178 19 C -0.177 4.177 20 C -0.156 4.156 21 C -0.187 4.187 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.189 8.613 -3.099 9.693 hybrid contribution -0.373 -0.486 0.825 1.028 sum 2.817 8.127 -2.274 8.897 Atomic orbital electron populations 1.21847 0.96355 1.00335 0.98407 1.21300 0.94701 0.83955 0.99012 1.44045 1.55362 1.11704 1.06242 1.21042 1.36125 1.05432 0.84900 0.83565 1.26098 0.96087 0.97225 1.02348 1.70365 1.37362 1.17193 1.28293 0.85114 0.79279 0.77925 0.77414 1.20136 1.21511 1.17854 1.20612 0.82177 0.90063 0.82593 1.90383 1.61089 1.67134 1.33155 1.21689 0.99285 0.90954 0.96313 1.22110 0.97497 0.99057 0.89895 1.22905 0.96611 1.00753 0.97076 1.22676 0.96756 1.01086 0.95785 1.23040 0.97038 1.01048 0.96672 1.23238 0.96645 0.98769 0.99051 1.22774 0.94822 0.96126 1.01900 1.23439 0.97267 0.97523 1.00452 0.93507 0.91172 0.97848 0.96351 0.88695 0.92691 0.87117 0.92235 0.91440 0.88488 0.93146 0.91570 0.90823 0.89239 0.90955 0.88246 0.90766 0.91815 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.39 9.33 71.98 0.67 -4.72 16 2 C 0.13 6.86 5.52 86.38 0.48 7.33 16 3 N -0.46 -22.94 2.64 -635.53 -1.68 -24.61 16 4 C -0.35 -16.55 6.17 84.04 0.52 -16.03 16 5 H 0.15 6.30 2.54 -2.91 -0.01 6.29 16 6 C -0.02 -0.85 5.22 84.93 0.44 -0.40 16 7 N -0.89 -44.45 7.26 21.66 0.16 -44.29 16 8 Si 0.98 37.75 29.55 68.60 2.03 39.78 16 9 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 10 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 12 C 0.45 21.89 6.41 87.66 0.56 22.45 16 13 O -0.63 -32.97 11.07 -3.05 -0.03 -33.01 16 14 C -0.08 -3.02 0.79 -52.40 -0.04 -3.06 16 15 C -0.07 -2.22 3.14 -10.27 -0.03 -2.25 16 16 C -0.14 -4.72 7.26 31.18 0.23 -4.49 16 17 C -0.13 -3.85 8.09 31.18 0.25 -3.60 16 18 C -0.14 -4.83 7.24 31.12 0.23 -4.60 16 19 C -0.14 -4.75 6.67 31.18 0.21 -4.54 16 20 C -0.12 -3.37 7.36 31.18 0.23 -3.14 16 21 C -0.15 -5.25 6.67 31.12 0.21 -5.04 16 22 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.07 3.59 6.03 -2.39 -0.01 3.58 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.02 0.97 7.18 -2.39 -0.02 0.95 16 26 H 0.10 5.10 5.92 -2.39 -0.01 5.08 16 27 H 0.26 12.59 8.31 -92.71 -0.77 11.82 16 28 H 0.11 2.99 7.56 -2.39 -0.02 2.98 16 29 H 0.06 2.59 5.87 -2.39 -0.01 2.57 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 3.17 5.47 -2.39 -0.01 3.15 16 35 H 0.09 3.48 5.33 -2.39 -0.01 3.47 16 36 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 37 H 0.10 2.27 7.72 -2.39 -0.02 2.26 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 40 H 0.10 4.20 4.82 -2.39 -0.01 4.19 16 Total: -1.00 -56.18 291.63 5.46 -50.73 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 1.03 Total: 33.50 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 3.95 Total: -22.10 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.52 Total: -68.91 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.03 Total: -33.01 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -56.18 5.46 -50.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455002096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.831 kcal (2) G-P(sol) polarization free energy of solvation -56.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds