Wall clock time and date at job start Mon Mar 30 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.34776 * 120.00056 * 85.00588 * 12 2 1 14 14 O 1.21288 * 120.00081 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00464 * 180.02562 * 13 12 2 16 16 C 1.53002 * 112.85292 * 179.97438 * 15 13 12 17 17 C 1.53778 * 113.61531 * 48.79867 * 16 15 13 18 18 C 1.53957 * 87.01974 * 220.05070 * 17 16 15 19 19 C 1.53779 * 113.61171 * 311.19198 * 16 15 13 20 20 C 1.53778 * 113.61515 * 48.79716 * 15 13 12 21 21 C 1.53958 * 87.01952 * 220.05254 * 20 15 13 22 22 C 1.53778 * 87.10975 * 25.36214 * 21 20 15 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00221 * 265.00067 * 12 2 1 28 28 H 1.09001 * 112.85020 * 179.97438 * 16 15 13 29 29 H 1.08999 * 113.61433 * 334.56935 * 17 16 15 30 30 H 1.09001 * 113.61450 * 105.46849 * 17 16 15 31 31 H 1.08996 * 113.53890 * 270.81114 * 18 17 16 32 32 H 1.09001 * 113.74099 * 139.94255 * 18 17 16 33 33 H 1.09005 * 113.61616 * 254.53149 * 19 16 15 34 34 H 1.09001 * 113.61500 * 25.34719 * 19 16 15 35 35 H 1.09003 * 113.61289 * 334.56954 * 20 15 13 36 36 H 1.08993 * 113.61319 * 105.47343 * 20 15 13 37 37 H 1.09003 * 113.53546 * 270.81224 * 21 20 15 38 38 H 1.09004 * 113.66783 * 139.93374 * 21 20 15 39 39 H 1.09001 * 113.61391 * 220.08525 * 22 21 20 40 40 H 1.09000 * 113.69210 * 89.20198 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 7 2.0183 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 6 2.7307 0.1866 -4.8107 17 6 3.4450 1.5203 -4.5351 18 6 2.3732 2.1846 -5.4183 19 6 1.4532 1.0081 -5.0516 20 6 1.9342 -2.0624 -3.8635 21 6 3.3114 -2.6268 -4.2573 22 6 3.9260 -1.5510 -3.3465 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 2.2490 -1.6319 -1.1524 28 1 3.0941 -0.3273 -5.7006 29 1 3.4037 1.8301 -3.4909 30 1 4.4502 1.5718 -4.9534 31 1 2.6392 2.2180 -6.4748 32 1 2.0256 3.1454 -5.0388 33 1 0.8527 0.6467 -5.8865 34 1 0.8656 1.1764 -4.1492 35 1 1.5120 -2.5243 -2.9710 36 1 1.2274 -2.0156 -4.6919 37 1 3.5506 -2.4942 -5.3125 38 1 3.4832 -3.6449 -3.9080 39 1 4.8250 -1.0920 -3.7581 40 1 4.0502 -1.8716 -2.3122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514914507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:21 Heat of formation + Delta-G solvation = -5.379243 kcal Electronic energy + Delta-G solvation = -19532.104116 eV Core-core repulsion = 16733.849367 eV Total energy + Delta-G solvation = -2798.254749 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75631 -37.44659 -36.90003 -34.61176 -32.23813 -29.03015 -27.22144 -26.01821 -25.24627 -24.74027 -23.85836 -21.27656 -19.98590 -19.40879 -18.55240 -16.84598 -15.86826 -15.57073 -15.00098 -14.89383 -14.30672 -14.16129 -13.75949 -13.20147 -12.81673 -12.39785 -12.29041 -12.18557 -11.88567 -11.49465 -11.41239 -11.16285 -11.06981 -10.92521 -10.88583 -10.66646 -10.35846 -10.28859 -10.23200 -10.14835 -9.69956 -9.63590 -9.01860 -8.59755 -8.45688 -7.82317 -6.11866 -4.20870 3.23453 3.31281 3.33767 3.37929 4.12841 4.38882 4.68835 4.69594 4.77856 4.84069 5.12945 5.20204 5.20898 5.26403 5.51001 5.59240 5.65578 5.76736 5.84217 5.96645 6.00992 6.05395 6.06092 6.19917 6.21544 6.30881 6.47730 6.57163 6.66574 6.83933 6.96292 7.04586 7.17704 7.52150 7.60306 7.71824 7.94137 8.16920 8.72763 8.81404 9.21194 9.47492 10.94103 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.006123 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.579846 B = 4572.024580 C = 5047.132181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.516 3.484 14 O -0.547 6.547 15 C -0.095 4.095 16 C -0.075 4.075 17 C -0.135 4.135 18 C -0.137 4.137 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.126 4.126 23 H 0.025 0.975 24 H 0.089 0.911 25 H 0.014 0.986 26 H 0.263 0.737 27 H 0.386 0.614 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -5.004 -13.586 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.427 6.427 15 C -0.099 4.099 16 C -0.094 4.094 17 C -0.172 4.172 18 C -0.175 4.175 19 C -0.172 4.172 20 C -0.163 4.163 21 C -0.175 4.175 22 C -0.164 4.164 23 H 0.044 0.956 24 H 0.107 0.893 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.219 0.781 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.317 -4.032 -13.434 14.413 hybrid contribution 0.398 -0.948 0.906 1.370 sum 3.715 -4.980 -12.528 13.984 Atomic orbital electron populations 1.22066 0.98579 0.98994 1.00809 1.18708 0.90923 0.93950 0.80099 0.93428 1.21264 1.32347 1.13057 0.90400 0.92151 1.24890 0.94851 0.94942 0.99053 1.69918 1.36017 1.22449 1.23725 0.86411 0.78626 0.79517 0.82644 1.19760 1.20889 1.20881 1.46519 1.64990 1.13451 1.10541 1.20104 0.78229 0.87178 0.84348 1.90544 1.51165 1.16142 1.84827 1.22008 0.98051 0.94788 0.95006 1.22078 0.98672 0.93790 0.94829 1.23117 0.96174 0.95349 1.02574 1.22675 0.98001 0.98405 0.98400 1.23080 0.96094 0.95880 1.02134 1.22966 0.96668 0.94611 1.02094 1.22862 0.96382 0.98551 0.99717 1.22939 0.96418 0.96309 1.00698 0.95600 0.89271 0.96680 0.92667 0.78144 0.89617 0.87582 0.93105 0.91533 0.91731 0.93158 0.87621 0.89560 0.91030 0.90247 0.91294 0.91025 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.73 2.56 -69.09 -0.18 6.55 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.31 -17.82 -0.09 1.68 16 7 N -0.88 -24.99 11.33 55.43 0.63 -24.36 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.71 -14.67 4.66 -54.94 -0.26 -14.93 16 13 C 0.52 10.12 6.42 -10.99 -0.07 10.05 16 14 O -0.55 -12.43 11.23 5.55 0.06 -12.36 16 15 C -0.10 -1.41 0.79 -154.85 -0.12 -1.53 16 16 C -0.08 -1.05 3.14 -89.81 -0.28 -1.33 16 17 C -0.14 -2.03 7.25 -25.83 -0.19 -2.22 16 18 C -0.14 -1.92 8.09 -25.83 -0.21 -2.13 16 19 C -0.13 -2.01 7.24 -25.92 -0.19 -2.20 16 20 C -0.13 -1.58 7.10 -25.83 -0.18 -1.77 16 21 C -0.14 -1.46 7.77 -25.83 -0.20 -1.66 16 22 C -0.13 -1.61 7.09 -25.92 -0.18 -1.79 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.42 6.08 -51.93 -0.32 2.11 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.39 7.10 6.86 -40.82 -0.28 6.82 16 28 H 0.09 1.03 7.56 -51.93 -0.39 0.64 16 29 H 0.11 1.96 5.67 -51.93 -0.29 1.66 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.11 1.93 5.67 -51.93 -0.29 1.63 16 35 H 0.09 1.12 7.22 -51.93 -0.38 0.75 16 36 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.08 0.75 7.72 -51.93 -0.40 0.35 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.09 1.18 7.22 -51.93 -0.38 0.80 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -28.85 309.64 -8.24 -37.08 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.46 Total: 8.31 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.85 Total: -14.07 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.37 Total: -39.29 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.06 Total: -12.36 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.85 -8.24 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514914507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.704 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds