Wall clock time and date at job start Mon Mar 30 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.34776 * 120.00056 * 85.00588 * 12 2 1 14 14 O 1.21288 * 120.00081 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00464 * 180.02562 * 13 12 2 16 16 C 1.53002 * 112.85292 * 179.97438 * 15 13 12 17 17 C 1.53778 * 113.61531 * 48.79867 * 16 15 13 18 18 C 1.53957 * 87.01974 * 220.05070 * 17 16 15 19 19 C 1.53779 * 113.61171 * 311.19198 * 16 15 13 20 20 C 1.53778 * 113.61515 * 48.79716 * 15 13 12 21 21 C 1.53958 * 87.01952 * 220.05254 * 20 15 13 22 22 C 1.53778 * 87.10975 * 25.36214 * 21 20 15 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.97003 * 120.00221 * 265.00067 * 12 2 1 28 28 H 1.09001 * 112.85020 * 179.97438 * 16 15 13 29 29 H 1.08999 * 113.61433 * 334.56935 * 17 16 15 30 30 H 1.09001 * 113.61450 * 105.46849 * 17 16 15 31 31 H 1.08996 * 113.53890 * 270.81114 * 18 17 16 32 32 H 1.09001 * 113.74099 * 139.94255 * 18 17 16 33 33 H 1.09005 * 113.61616 * 254.53149 * 19 16 15 34 34 H 1.09001 * 113.61500 * 25.34719 * 19 16 15 35 35 H 1.09003 * 113.61289 * 334.56954 * 20 15 13 36 36 H 1.08993 * 113.61319 * 105.47343 * 20 15 13 37 37 H 1.09003 * 113.53546 * 270.81224 * 21 20 15 38 38 H 1.09004 * 113.66783 * 139.93374 * 21 20 15 39 39 H 1.09001 * 113.61391 * 220.08525 * 22 21 20 40 40 H 1.09000 * 113.69210 * 89.20198 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 7 2.0183 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 6 2.7307 0.1866 -4.8107 17 6 3.4450 1.5203 -4.5351 18 6 2.3732 2.1846 -5.4183 19 6 1.4532 1.0081 -5.0516 20 6 1.9342 -2.0624 -3.8635 21 6 3.3114 -2.6268 -4.2573 22 6 3.9260 -1.5510 -3.3465 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 2.2490 -1.6319 -1.1524 28 1 3.0941 -0.3273 -5.7006 29 1 3.4037 1.8301 -3.4909 30 1 4.4502 1.5718 -4.9534 31 1 2.6392 2.2180 -6.4748 32 1 2.0256 3.1454 -5.0388 33 1 0.8527 0.6467 -5.8865 34 1 0.8656 1.1764 -4.1492 35 1 1.5120 -2.5243 -2.9710 36 1 1.2274 -2.0156 -4.6919 37 1 3.5506 -2.4942 -5.3125 38 1 3.4832 -3.6449 -3.9080 39 1 4.8250 -1.0920 -3.7581 40 1 4.0502 -1.8716 -2.3122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514914507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:21 Heat of formation + Delta-G solvation = -21.942468 kcal Electronic energy + Delta-G solvation = -19532.822351 eV Core-core repulsion = 16733.849367 eV Total energy + Delta-G solvation = -2798.972984 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.02521 -38.97838 -38.02457 -36.49169 -34.17717 -30.92385 -28.39691 -27.36357 -27.07732 -25.84659 -25.14729 -22.88591 -21.53160 -20.64802 -20.00888 -18.48764 -17.39229 -17.19260 -16.45690 -16.16746 -15.90678 -15.70189 -14.96898 -14.67862 -14.39821 -13.98318 -13.79693 -13.38478 -13.24622 -13.09657 -12.93732 -12.81139 -12.61273 -12.53887 -12.29369 -12.17512 -12.10306 -11.84504 -11.37905 -11.36402 -11.10162 -10.80254 -10.72523 -10.63610 -10.01776 -9.64088 -8.19033 -6.36644 1.42587 1.43410 1.55689 1.87422 2.35301 2.68819 3.11264 3.54097 3.63059 3.68432 3.90869 4.00243 4.06180 4.17917 4.29939 4.38764 4.69162 4.74085 4.80598 4.83893 4.88171 4.92047 4.97812 5.02501 5.09064 5.13125 5.13577 5.16874 5.22587 5.28346 5.43226 5.48757 5.54029 5.62178 5.70776 5.87771 5.93225 6.10900 6.72498 7.05188 7.32111 7.65667 8.87462 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.006123 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.579846 B = 4572.024580 C = 5047.132181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.707 5.707 13 C 0.507 3.493 14 O -0.584 6.584 15 C -0.100 4.100 16 C -0.063 4.063 17 C -0.143 4.143 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.127 4.127 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.010 0.990 26 H 0.265 0.735 27 H 0.399 0.601 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -7.605 -15.369 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.013 0.987 4 C -0.583 4.583 5 H 0.089 0.911 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.355 5.355 13 C 0.295 3.705 14 O -0.466 6.466 15 C -0.103 4.103 16 C -0.082 4.082 17 C -0.180 4.180 18 C -0.168 4.168 19 C -0.178 4.178 20 C -0.163 4.163 21 C -0.152 4.152 22 C -0.165 4.165 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.234 0.766 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.632 -6.662 -15.244 17.269 hybrid contribution -0.029 -0.034 1.443 1.443 sum 4.602 -6.696 -13.801 16.015 Atomic orbital electron populations 1.21875 0.98534 0.99238 0.99337 1.18264 0.90897 0.91750 0.82139 0.98699 1.21576 1.32488 1.13357 0.90900 0.91077 1.25822 0.94901 0.95562 1.02389 1.70070 1.37156 1.23970 1.24520 0.85288 0.78123 0.78519 0.78348 1.18311 1.20970 1.20343 1.46278 1.65472 1.13962 1.09824 1.21138 0.77094 0.86918 0.85335 1.90547 1.52367 1.18134 1.85513 1.22154 1.00042 0.95469 0.92639 1.22156 0.97425 0.93088 0.95500 1.23012 0.97856 0.96762 1.00357 1.22708 0.97111 0.97117 0.99905 1.22971 0.96630 0.97113 1.01092 1.23009 0.98216 0.92769 1.02312 1.22814 0.93481 0.98499 1.00408 1.22982 0.95727 0.96777 1.01031 0.94263 0.91666 0.97133 0.92584 0.76600 0.85839 0.92004 0.90943 0.88213 0.93608 0.90840 0.91871 0.90367 0.89861 0.87919 0.89580 0.90072 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.50 2.56 44.25 0.11 14.61 16 3 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 4 C -0.55 -29.36 8.73 25.60 0.22 -29.13 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.71 5.31 84.66 0.45 1.16 16 7 N -0.92 -53.60 11.33 21.45 0.24 -53.36 16 8 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 N -0.71 -30.10 4.66 -446.12 -2.08 -32.18 16 13 C 0.51 20.50 6.42 87.66 0.56 21.07 16 14 O -0.58 -28.29 11.23 -3.05 -0.03 -28.33 16 15 C -0.10 -2.82 0.79 -52.40 -0.04 -2.86 16 16 C -0.06 -1.62 3.14 -10.27 -0.03 -1.65 16 17 C -0.14 -4.19 7.25 31.18 0.23 -3.96 16 18 C -0.13 -3.53 8.09 31.18 0.25 -3.28 16 19 C -0.14 -4.08 7.24 31.12 0.23 -3.85 16 20 C -0.13 -2.80 7.10 31.18 0.22 -2.58 16 21 C -0.11 -1.92 7.77 31.18 0.24 -1.68 16 22 C -0.13 -2.93 7.09 31.12 0.22 -2.71 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 3.71 6.08 -2.39 -0.01 3.70 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 27 H 0.40 14.68 6.86 -92.71 -0.64 14.05 16 28 H 0.12 2.32 7.56 -2.39 -0.02 2.30 16 29 H 0.06 2.40 5.67 -2.39 -0.01 2.38 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.06 2.40 5.67 -2.39 -0.01 2.39 16 35 H 0.08 1.88 7.22 -2.39 -0.02 1.86 16 36 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 37 H 0.10 1.32 7.72 -2.39 -0.02 1.30 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 40 H 0.08 1.94 7.22 -2.39 -0.02 1.92 16 Total: -1.00 -66.31 309.64 3.87 -62.44 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.39 Total: 27.98 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 3.33 Total: -21.04 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -1.84 Total: -85.54 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.03 Total: -28.33 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -66.31 3.87 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514914507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.499 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds