Wall clock time and date at job start Mon Mar 30 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46939 * 2 1 4 4 C 1.46491 * 120.00135 * 272.39966 * 3 2 1 5 5 C 1.50696 * 109.47424 * 269.99991 * 4 3 2 6 6 H 1.08002 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00272 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99942 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00137 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47337 * 90.00070 * 9 7 5 11 11 H 1.48497 * 109.47421 * 209.99992 * 9 7 5 12 12 H 1.48496 * 109.47270 * 330.00468 * 9 7 5 13 13 C 1.34781 * 120.00062 * 92.40016 * 3 2 1 14 14 O 1.21273 * 120.00155 * 184.60620 * 13 3 2 15 15 C 1.50699 * 119.99771 * 4.60987 * 13 3 2 16 16 H 1.09003 * 110.05414 * 335.76874 * 15 13 3 17 17 C 1.54382 * 110.07230 * 97.25643 * 15 13 3 18 18 C 1.54929 * 104.22005 * 142.84262 * 17 15 13 19 19 C 1.54980 * 102.98752 * 322.18701 * 18 17 15 20 20 C 1.53487 * 110.11273 * 214.25411 * 15 13 3 21 21 C 1.52571 * 121.04990 * 96.53324 * 20 15 13 22 22 C 1.52548 * 121.09003 * 24.82131 * 20 15 13 23 23 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47457 * 299.99670 * 1 2 3 25 25 H 1.09003 * 109.47139 * 60.00264 * 1 2 3 26 26 H 1.09002 * 109.47457 * 240.00330 * 2 1 3 27 27 H 1.09003 * 109.47139 * 119.99735 * 2 1 3 28 28 H 1.09005 * 109.47382 * 30.00032 * 4 3 2 29 29 H 1.09002 * 109.47675 * 149.99928 * 4 3 2 30 30 H 0.96996 * 119.99954 * 179.97438 * 8 7 5 31 31 H 1.08999 * 110.48098 * 24.15967 * 17 15 13 32 32 H 1.08999 * 110.48325 * 261.52891 * 17 15 13 33 33 H 1.09010 * 110.73988 * 80.60946 * 18 17 15 34 34 H 1.09004 * 110.74326 * 203.75883 * 18 17 15 35 35 H 1.09003 * 110.51761 * 156.30703 * 19 18 17 36 36 H 1.09004 * 110.51012 * 279.02313 * 19 18 17 37 37 H 1.08998 * 117.51442 * 356.96996 * 21 20 15 38 38 H 1.08999 * 117.50637 * 142.05799 * 21 20 15 39 39 H 1.08991 * 117.50740 * 217.88538 * 22 20 15 40 40 H 1.09004 * 117.50753 * 2.96812 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2123 2.0896 -1.2675 5 6 3.6172 1.8594 -1.7617 6 1 4.2975 1.2463 -1.1891 7 6 4.0340 2.4305 -2.9455 8 7 3.2055 3.1766 -3.6431 9 14 5.7756 2.1457 -3.5576 10 1 5.8061 0.9362 -4.4188 11 1 6.2232 3.3238 -4.3430 12 1 6.6823 1.9504 -2.3979 13 6 2.2890 2.0003 1.1662 14 8 2.6128 3.1690 1.1715 15 6 2.1893 1.2402 2.4636 16 1 1.5087 0.3963 2.3510 17 6 3.5854 0.7412 2.8940 18 6 3.5828 0.8865 4.4364 19 6 2.8010 2.2058 4.6606 20 6 1.6969 2.1683 3.5826 21 6 0.2230 2.2161 3.9738 22 6 0.8697 3.4109 3.2684 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5020 1.7159 -2.0051 29 1 2.0509 3.1568 -1.1159 30 1 3.4988 3.5787 -4.4757 31 1 4.3650 1.3628 2.4537 32 1 3.7220 -0.3021 2.6094 33 1 3.0658 0.0475 4.9023 34 1 4.6003 0.9711 4.8180 35 1 2.3643 2.2261 5.6592 36 1 3.4529 3.0663 4.5102 37 1 -0.4713 1.6058 3.3963 38 1 -0.0136 2.3240 5.0323 39 1 1.0583 4.3048 3.8629 40 1 0.6006 3.5866 2.2268 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528132610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:04 Heat of formation + Delta-G solvation = -24.155684 kcal Electronic energy + Delta-G solvation = -19502.608846 eV Core-core repulsion = 16703.539889 eV Total energy + Delta-G solvation = -2799.068957 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04541 -37.55461 -35.15308 -33.98791 -32.76186 -30.06915 -29.34969 -26.83198 -25.50014 -23.02840 -22.73360 -22.20723 -20.74511 -19.33596 -17.60035 -16.66819 -16.33281 -15.51551 -15.17751 -14.79893 -14.38158 -14.19003 -13.56582 -13.31474 -12.94055 -12.77682 -12.36100 -12.18049 -12.02748 -11.59432 -11.34135 -11.15755 -11.14303 -10.99524 -10.83351 -10.70892 -10.69133 -10.56781 -10.35945 -10.10978 -10.01283 -9.58802 -9.51267 -8.63344 -8.41377 -7.56869 -6.02055 -4.06728 3.30661 3.37237 3.40866 3.50731 3.81510 4.21094 4.47131 4.52394 4.83220 5.02042 5.07438 5.25548 5.31319 5.33735 5.37117 5.43616 5.60669 5.66031 5.76385 5.77991 5.81587 5.93007 5.96871 6.04514 6.06808 6.13441 6.22787 6.26468 6.29060 6.34374 6.44586 6.49838 6.55415 7.14211 7.50082 7.62313 7.95477 8.27311 8.52410 8.94021 9.20572 9.58608 11.05904 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.006604 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.491950 B = 4238.910586 C = 4553.556203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.600 5.600 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.513 3.487 14 O -0.535 6.535 15 C -0.083 4.083 16 H 0.088 0.912 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.085 4.085 20 C -0.110 4.110 21 C -0.178 4.178 22 C -0.149 4.149 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -7.134 14.286 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.300 3.700 14 O -0.412 6.412 15 C -0.104 4.104 16 H 0.106 0.894 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.215 4.215 22 C -0.185 4.185 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.440 -6.393 14.078 16.086 hybrid contribution 0.882 -0.230 -0.608 1.096 sum -3.558 -6.623 13.469 15.425 Atomic orbital electron populations 1.22221 0.96918 1.01284 1.02280 1.21423 0.93456 0.84558 1.02482 1.48268 1.63775 1.13222 1.07861 1.19226 0.96353 0.93414 0.78327 1.21455 0.97777 1.31085 1.06077 0.92532 1.24939 0.97632 0.94964 0.96600 1.69938 1.35364 1.32844 1.15271 0.86516 0.84636 0.77644 0.78744 1.20655 1.21097 1.19922 1.20191 0.77769 0.87386 0.84661 1.90642 1.47321 1.16368 1.86882 1.21501 0.98567 0.97652 0.92695 0.89430 1.22248 0.95590 1.01042 0.95636 1.22444 0.99985 0.97488 0.95730 1.21936 0.95785 0.98101 0.96408 1.21497 0.91773 1.00604 0.97197 1.23060 0.94591 1.03183 1.00665 1.22869 1.02200 0.91757 1.01719 0.92265 0.93165 0.92057 0.90206 0.91569 0.95251 0.93914 0.92767 0.90664 0.91241 0.91531 0.91483 0.91880 0.90962 0.89216 0.89101 0.89137 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.17 37.16 0.38 -1.99 16 2 C 0.11 1.74 5.77 -4.04 -0.02 1.72 16 3 N -0.60 -12.89 2.46 -175.06 -0.43 -13.32 16 4 C 0.25 6.53 5.21 -5.20 -0.03 6.51 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.51 10.84 5.84 -10.98 -0.06 10.78 16 14 O -0.54 -13.52 14.38 5.56 0.08 -13.44 16 15 C -0.08 -1.32 2.41 -90.80 -0.22 -1.53 16 16 H 0.09 1.23 5.96 -51.93 -0.31 0.92 16 17 C -0.11 -1.55 6.36 -24.99 -0.16 -1.71 16 18 C -0.12 -1.39 6.89 -24.67 -0.17 -1.56 16 19 C -0.08 -1.08 6.62 -24.97 -0.17 -1.25 16 20 C -0.11 -1.61 2.07 -154.00 -0.32 -1.93 16 21 C -0.18 -2.24 10.24 -26.91 -0.28 -2.52 16 22 C -0.15 -2.31 8.92 -26.92 -0.24 -2.55 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.68 8.06 -51.93 -0.42 0.27 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 27 H 0.07 0.93 6.06 -51.93 -0.31 0.61 16 28 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.10 1.83 6.78 -51.93 -0.35 1.48 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -32.30 322.08 -8.28 -40.58 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.80 Total: 0.23 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.71 Total: -9.77 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.31 Total: -39.50 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.30 -8.28 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528132610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.421 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds