Wall clock time and date at job start Mon Mar 30 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46939 * 2 1 4 4 C 1.46491 * 120.00135 * 272.39966 * 3 2 1 5 5 C 1.50696 * 109.47424 * 269.99991 * 4 3 2 6 6 H 1.08002 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00272 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99942 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00137 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47337 * 90.00070 * 9 7 5 11 11 H 1.48497 * 109.47421 * 209.99992 * 9 7 5 12 12 H 1.48496 * 109.47270 * 330.00468 * 9 7 5 13 13 C 1.34781 * 120.00062 * 92.40016 * 3 2 1 14 14 O 1.21273 * 120.00155 * 184.60620 * 13 3 2 15 15 C 1.50699 * 119.99771 * 4.60987 * 13 3 2 16 16 H 1.09003 * 110.05414 * 335.76874 * 15 13 3 17 17 C 1.54382 * 110.07230 * 97.25643 * 15 13 3 18 18 C 1.54929 * 104.22005 * 142.84262 * 17 15 13 19 19 C 1.54980 * 102.98752 * 322.18701 * 18 17 15 20 20 C 1.53487 * 110.11273 * 214.25411 * 15 13 3 21 21 C 1.52571 * 121.04990 * 96.53324 * 20 15 13 22 22 C 1.52548 * 121.09003 * 24.82131 * 20 15 13 23 23 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47457 * 299.99670 * 1 2 3 25 25 H 1.09003 * 109.47139 * 60.00264 * 1 2 3 26 26 H 1.09002 * 109.47457 * 240.00330 * 2 1 3 27 27 H 1.09003 * 109.47139 * 119.99735 * 2 1 3 28 28 H 1.09005 * 109.47382 * 30.00032 * 4 3 2 29 29 H 1.09002 * 109.47675 * 149.99928 * 4 3 2 30 30 H 0.96996 * 119.99954 * 179.97438 * 8 7 5 31 31 H 1.08999 * 110.48098 * 24.15967 * 17 15 13 32 32 H 1.08999 * 110.48325 * 261.52891 * 17 15 13 33 33 H 1.09010 * 110.73988 * 80.60946 * 18 17 15 34 34 H 1.09004 * 110.74326 * 203.75883 * 18 17 15 35 35 H 1.09003 * 110.51761 * 156.30703 * 19 18 17 36 36 H 1.09004 * 110.51012 * 279.02313 * 19 18 17 37 37 H 1.08998 * 117.51442 * 356.96996 * 21 20 15 38 38 H 1.08999 * 117.50637 * 142.05799 * 21 20 15 39 39 H 1.08991 * 117.50740 * 217.88538 * 22 20 15 40 40 H 1.09004 * 117.50753 * 2.96812 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2123 2.0896 -1.2675 5 6 3.6172 1.8594 -1.7617 6 1 4.2975 1.2463 -1.1891 7 6 4.0340 2.4305 -2.9455 8 7 3.2055 3.1766 -3.6431 9 14 5.7756 2.1457 -3.5576 10 1 5.8061 0.9362 -4.4188 11 1 6.2232 3.3238 -4.3430 12 1 6.6823 1.9504 -2.3979 13 6 2.2890 2.0003 1.1662 14 8 2.6128 3.1690 1.1715 15 6 2.1893 1.2402 2.4636 16 1 1.5087 0.3963 2.3510 17 6 3.5854 0.7412 2.8940 18 6 3.5828 0.8865 4.4364 19 6 2.8010 2.2058 4.6606 20 6 1.6969 2.1683 3.5826 21 6 0.2230 2.2161 3.9738 22 6 0.8697 3.4109 3.2684 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5020 1.7159 -2.0051 29 1 2.0509 3.1568 -1.1159 30 1 3.4988 3.5787 -4.4757 31 1 4.3650 1.3628 2.4537 32 1 3.7220 -0.3021 2.6094 33 1 3.0658 0.0475 4.9023 34 1 4.6003 0.9711 4.8180 35 1 2.3643 2.2261 5.6592 36 1 3.4529 3.0663 4.5102 37 1 -0.4713 1.6058 3.3963 38 1 -0.0136 2.3240 5.0323 39 1 1.0583 4.3048 3.8629 40 1 0.6006 3.5866 2.2268 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528132610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:03 Heat of formation + Delta-G solvation = -43.188488 kcal Electronic energy + Delta-G solvation = -19503.434170 eV Core-core repulsion = 16703.539889 eV Total energy + Delta-G solvation = -2799.894281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46666 -38.97139 -36.87539 -35.15275 -34.83628 -31.69559 -30.66041 -28.68464 -26.68717 -24.97955 -24.16266 -23.31760 -21.86844 -20.74404 -19.03773 -18.60516 -18.12657 -17.11810 -16.40889 -16.37648 -15.86564 -15.73412 -14.92899 -14.71509 -14.36650 -14.29590 -13.84442 -13.52534 -13.46098 -13.22145 -13.12341 -12.71610 -12.55981 -12.41519 -12.31845 -12.18936 -12.03632 -11.84271 -11.74073 -11.72203 -11.55418 -11.10578 -10.70936 -10.66601 -10.26152 -9.40069 -8.24491 -6.40129 1.33535 1.36921 1.47242 1.87152 2.28070 2.41852 2.94591 3.04435 3.40552 3.71219 3.82421 3.96943 4.06560 4.16368 4.29157 4.32809 4.40046 4.44189 4.59667 4.73725 4.79078 4.81869 4.90063 4.92427 4.95915 5.01563 5.03958 5.10806 5.16832 5.18321 5.23730 5.28165 5.30959 5.37682 5.47006 5.56525 5.87275 6.05168 6.68583 6.84470 7.26686 7.54637 8.82542 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.006604 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.491950 B = 4238.910586 C = 4553.556203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.607 5.607 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.504 3.496 14 O -0.590 6.590 15 C -0.074 4.074 16 H 0.115 0.885 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.085 4.085 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.180 4.180 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.017 0.983 29 H -0.008 1.008 30 H 0.267 0.733 31 H 0.036 0.964 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -10.022 16.538 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.197 1.197 13 C 0.293 3.707 14 O -0.471 6.471 15 C -0.095 4.095 16 H 0.133 0.867 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.176 4.176 22 C -0.217 4.217 23 H 0.117 0.883 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.035 0.965 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.326 -9.329 16.344 19.310 hybrid contribution 0.792 0.719 -1.341 1.715 sum -3.534 -8.610 15.003 17.655 Atomic orbital electron populations 1.22156 0.94740 1.03540 1.01419 1.21764 0.95236 0.81691 1.03781 1.48321 1.64023 1.15072 1.06352 1.18634 0.95453 0.91142 0.80582 1.21715 0.98568 1.31355 1.06497 0.92869 1.25904 1.02265 0.94400 0.96710 1.70066 1.37586 1.33554 1.15740 0.85395 0.78776 0.78275 0.78253 1.18579 1.20585 1.19733 1.21259 0.76146 0.87096 0.86154 1.90606 1.49613 1.19071 1.87819 1.21569 1.00404 0.97956 0.89617 0.86709 1.22314 0.93204 1.01385 0.97981 1.22447 1.01022 0.97752 0.93179 1.21972 0.95025 0.98021 0.97182 1.21699 0.93799 0.99469 0.97396 1.23157 0.92802 0.99611 1.02017 1.22741 1.05507 0.93394 1.00039 0.88317 0.92515 0.94493 0.91072 0.88039 0.96459 0.98961 0.92401 0.94459 0.88953 0.88455 0.90303 0.88905 0.93245 0.88304 0.85983 0.88863 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 10.17 71.98 0.73 -3.51 16 2 C 0.10 3.13 5.77 86.38 0.50 3.63 16 3 N -0.61 -27.01 2.46 -826.17 -2.03 -29.04 16 4 C 0.26 14.89 5.21 85.63 0.45 15.34 16 5 C -0.54 -32.34 9.39 25.60 0.24 -32.10 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.35 5.46 84.66 0.46 0.82 16 8 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 9 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 13 C 0.50 22.07 5.84 87.66 0.51 22.59 16 14 O -0.59 -32.04 14.38 -3.01 -0.04 -32.09 16 15 C -0.07 -2.26 2.41 -10.91 -0.03 -2.29 16 16 H 0.12 2.82 5.96 -2.39 -0.01 2.80 16 17 C -0.11 -3.00 6.36 31.72 0.20 -2.80 16 18 C -0.11 -2.10 6.89 31.93 0.22 -1.88 16 19 C -0.08 -1.95 6.62 31.73 0.21 -1.74 16 20 C -0.12 -3.40 2.07 -51.85 -0.11 -3.51 16 21 C -0.14 -3.07 10.24 30.48 0.31 -2.76 16 22 C -0.18 -5.68 8.92 30.47 0.27 -5.40 16 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.42 8.06 -2.39 -0.02 1.40 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 2.40 8.09 -2.39 -0.02 2.39 16 27 H 0.10 2.53 6.06 -2.39 -0.01 2.52 16 28 H 0.02 1.00 8.07 -2.38 -0.02 0.98 16 29 H -0.01 -0.51 7.36 -2.39 -0.02 -0.53 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.04 1.28 7.85 -2.39 -0.02 1.26 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.09 1.59 8.11 -2.39 -0.02 1.57 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.06 2.30 6.78 -2.38 -0.02 2.28 16 Total: -1.00 -76.37 322.08 5.21 -71.16 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.99 Total: 13.24 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.97 Total: -13.62 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.74 Total: -86.62 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.04 Total: -32.09 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.37 5.21 -71.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528132610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.974 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds