Wall clock time and date at job start Mon Mar 30 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47233 * 2 1 4 4 C 1.50699 * 109.46912 * 239.99947 * 2 1 3 5 5 H 1.07997 * 120.00243 * 274.99900 * 4 2 1 6 6 C 1.37879 * 120.00034 * 95.00514 * 4 2 1 7 7 N 1.31507 * 120.00201 * 184.96511 * 6 4 2 8 8 Si 1.86801 * 119.99838 * 4.96971 * 6 4 2 9 9 H 1.48502 * 109.47353 * 84.94274 * 8 6 4 10 10 H 1.48499 * 109.46944 * 204.94428 * 8 6 4 11 11 H 1.48505 * 109.47301 * 324.94498 * 8 6 4 12 12 N 1.46504 * 109.47200 * 119.99859 * 2 1 3 13 13 C 1.46500 * 119.99776 * 59.99964 * 12 2 1 14 14 C 1.34769 * 120.00238 * 240.00119 * 12 2 1 15 15 O 1.21285 * 119.99854 * 5.27767 * 14 12 2 16 16 C 1.50701 * 120.00322 * 185.28137 * 14 12 2 17 17 H 1.08998 * 110.04607 * 336.64536 * 16 14 12 18 18 C 1.54383 * 110.07175 * 98.19127 * 16 14 12 19 19 C 1.54929 * 104.22246 * 142.79979 * 18 16 14 20 20 C 1.54990 * 102.81543 * 322.27241 * 19 18 16 21 21 C 1.53485 * 110.06930 * 215.16210 * 16 14 12 22 22 C 1.52567 * 121.05127 * 96.54244 * 21 16 14 23 23 C 1.52547 * 121.08735 * 24.82669 * 21 16 14 24 24 H 1.09001 * 109.47046 * 294.95506 * 1 2 3 25 25 H 1.08993 * 109.47246 * 54.95870 * 1 2 3 26 26 H 1.09000 * 109.47174 * 174.96146 * 1 2 3 27 27 H 0.96999 * 120.00369 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46934 * 95.36688 * 13 12 2 29 29 H 1.08998 * 109.47056 * 215.36370 * 13 12 2 30 30 H 1.08997 * 109.47492 * 335.36596 * 13 12 2 31 31 H 1.09004 * 110.48123 * 261.48349 * 18 16 14 32 32 H 1.08999 * 110.48322 * 24.11405 * 18 16 14 33 33 H 1.09001 * 110.74060 * 203.94061 * 19 18 16 34 34 H 1.09005 * 110.89750 * 80.67759 * 19 18 16 35 35 H 1.08996 * 110.51389 * 278.92198 * 20 19 18 36 36 H 1.09001 * 110.50562 * 156.21502 * 20 19 18 37 37 H 1.08994 * 117.51665 * 356.97433 * 22 21 16 38 38 H 1.09003 * 117.50375 * 142.06717 * 22 21 16 39 39 H 1.08997 * 117.50956 * 217.89086 * 23 21 16 40 40 H 1.09000 * 117.50793 * 2.93695 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3580 7 7 2.7050 -0.6131 -3.4625 8 14 2.3152 1.8791 -2.3169 9 1 3.6025 2.3938 -1.7846 10 1 2.1045 2.3995 -3.6917 11 1 1.2027 2.3283 -1.4416 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0075 1.1497 1.9422 16 6 3.3934 -0.7761 3.2506 17 1 2.8062 -1.6681 3.4691 18 6 4.8539 -1.1655 2.9368 19 6 5.5931 -0.9903 4.2870 20 6 4.9229 0.2730 4.8845 21 6 3.4435 0.1365 4.4837 22 6 2.3482 0.0868 5.5446 23 6 2.4813 1.3105 4.6344 24 1 -0.3633 0.4336 0.9317 25 1 -0.3633 0.5900 -0.8413 26 1 -0.3633 -1.0237 -0.0903 27 1 2.9354 -0.1049 -4.2559 28 1 2.4625 -2.7356 1.0558 29 1 1.5305 -2.2622 2.4965 30 1 0.7371 -2.3253 0.9044 31 1 4.9092 -2.2018 2.6033 32 1 5.2729 -0.4986 2.1833 33 1 6.6579 -0.8225 4.1252 34 1 5.4336 -1.8540 4.9325 35 1 5.3542 1.1754 4.4514 36 1 5.0252 0.2825 5.9697 37 1 1.5064 -0.5827 5.3683 38 1 2.6505 0.1987 6.5859 39 1 2.8710 2.2273 5.0769 40 1 1.7273 1.4462 3.8590 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528419114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:02 Heat of formation + Delta-G solvation = -18.497494 kcal Electronic energy + Delta-G solvation = -19627.075226 eV Core-core repulsion = 16828.251626 eV Total energy + Delta-G solvation = -2798.823599 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12006 -37.74673 -35.25231 -34.05819 -32.66286 -30.68637 -28.59545 -26.19003 -25.63570 -25.19171 -22.28464 -21.83640 -20.55515 -19.02591 -17.71056 -17.25505 -16.33346 -15.51636 -15.21788 -14.99465 -14.29093 -14.23786 -13.67669 -12.94973 -12.82272 -12.51701 -12.44228 -12.33924 -12.15389 -11.88115 -11.42878 -11.29027 -11.18136 -11.01676 -10.97148 -10.71524 -10.67654 -10.51446 -10.38486 -10.08176 -9.79457 -9.58314 -9.25667 -8.76543 -8.59823 -7.60692 -6.16461 -4.18137 3.31225 3.36053 3.38921 3.45981 3.72311 4.13928 4.39008 4.47994 4.78905 4.97288 5.03369 5.18184 5.25303 5.33641 5.40142 5.46222 5.72091 5.73783 5.77755 5.89465 5.93052 5.99437 6.03719 6.12338 6.16899 6.20466 6.26097 6.30681 6.36705 6.39441 6.41118 6.47674 6.61062 6.95331 7.10189 7.51066 7.67140 8.19796 8.53597 8.85778 9.03493 9.46735 10.95622 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.006931 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.849737 B = 4038.920100 C = 4102.188702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.223 3.777 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.591 5.591 13 C 0.087 3.913 14 C 0.512 3.488 15 O -0.550 6.550 16 C -0.081 4.081 17 H 0.090 0.910 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.111 4.111 22 C -0.177 4.177 23 C -0.150 4.150 24 H 0.026 0.974 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.266 0.734 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -1.924 16.298 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.122 3.878 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.701 3.299 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.322 5.322 13 C -0.057 4.057 14 C 0.299 3.701 15 O -0.429 6.429 16 C -0.103 4.103 17 H 0.108 0.892 18 C -0.144 4.144 19 C -0.156 4.156 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.214 4.214 23 C -0.187 4.187 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.019 -1.285 15.982 16.066 hybrid contribution -0.061 0.765 -0.265 0.812 sum 0.958 -0.520 15.717 15.755 Atomic orbital electron populations 1.22219 0.98532 1.00741 0.99071 1.19297 0.90721 0.94908 0.82893 0.91873 1.21138 1.44548 0.95692 0.94817 0.90482 1.24956 0.93833 0.98442 0.95232 1.69886 1.45366 1.36028 1.01666 0.86903 0.79891 0.86182 0.76925 1.19694 1.21390 1.18833 1.48340 1.49225 1.11631 1.23027 1.21588 1.01448 0.83337 0.99356 1.20333 0.78917 0.87482 0.83386 1.90616 1.61034 1.15519 1.75754 1.21511 0.98134 0.98038 0.92598 0.89224 1.22229 0.92504 1.01762 0.97884 1.22450 0.99118 0.97745 0.96326 1.21853 0.92286 0.98520 0.99587 1.21426 0.92410 1.01179 0.96147 1.23064 1.00340 1.02382 0.95613 1.22861 1.02101 0.92150 1.01561 0.95535 0.92679 0.93192 0.92420 0.93045 0.92969 0.90853 0.90980 0.90719 0.91415 0.91444 0.90997 0.91888 0.89150 0.89029 0.89130 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.06 37.16 0.34 -2.81 16 2 C 0.22 5.42 2.29 -69.08 -0.16 5.26 16 3 H 0.06 1.70 4.06 -51.93 -0.21 1.48 16 4 C -0.52 -14.49 8.82 -34.44 -0.30 -14.80 16 5 H 0.08 2.26 7.67 -52.49 -0.40 1.85 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 8 Si 0.87 22.45 26.99 -169.99 -4.59 17.86 16 9 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.57 6.81 56.52 0.39 -6.19 16 12 N -0.59 -12.42 2.75 -175.26 -0.48 -12.90 16 13 C 0.09 1.44 9.08 59.85 0.54 1.99 16 14 C 0.51 10.48 5.80 -10.99 -0.06 10.41 16 15 O -0.55 -13.21 14.24 5.55 0.08 -13.13 16 16 C -0.08 -1.27 2.74 -90.79 -0.25 -1.52 16 17 H 0.09 1.23 5.76 -51.93 -0.30 0.93 16 18 C -0.11 -1.53 6.36 -24.99 -0.16 -1.69 16 19 C -0.12 -1.38 6.91 -24.66 -0.17 -1.55 16 20 C -0.09 -1.06 6.58 -25.23 -0.17 -1.23 16 21 C -0.11 -1.58 2.06 -154.26 -0.32 -1.90 16 22 C -0.18 -2.14 10.23 -26.91 -0.28 -2.42 16 23 C -0.15 -2.22 8.93 -26.92 -0.24 -2.46 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.99 6.87 -51.93 -0.36 0.63 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.69 6.20 -51.93 -0.32 0.37 16 30 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.27 7.85 -51.93 -0.41 0.86 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.10 1.70 6.80 -51.93 -0.35 1.35 16 LS Contribution 312.88 15.07 4.71 4.71 Total: -1.00 -31.86 312.88 -7.32 -39.18 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.49 Total: 0.97 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.32 Total: -10.53 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.29 Total: -39.07 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.59 Total: 17.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.86 -7.32 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528419114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.682 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds