Wall clock time and date at job start Mon Mar 30 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47233 * 2 1 4 4 C 1.50699 * 109.46912 * 239.99947 * 2 1 3 5 5 H 1.07997 * 120.00243 * 274.99900 * 4 2 1 6 6 C 1.37879 * 120.00034 * 95.00514 * 4 2 1 7 7 N 1.31507 * 120.00201 * 184.96511 * 6 4 2 8 8 Si 1.86801 * 119.99838 * 4.96971 * 6 4 2 9 9 H 1.48502 * 109.47353 * 84.94274 * 8 6 4 10 10 H 1.48499 * 109.46944 * 204.94428 * 8 6 4 11 11 H 1.48505 * 109.47301 * 324.94498 * 8 6 4 12 12 N 1.46504 * 109.47200 * 119.99859 * 2 1 3 13 13 C 1.46500 * 119.99776 * 59.99964 * 12 2 1 14 14 C 1.34769 * 120.00238 * 240.00119 * 12 2 1 15 15 O 1.21285 * 119.99854 * 5.27767 * 14 12 2 16 16 C 1.50701 * 120.00322 * 185.28137 * 14 12 2 17 17 H 1.08998 * 110.04607 * 336.64536 * 16 14 12 18 18 C 1.54383 * 110.07175 * 98.19127 * 16 14 12 19 19 C 1.54929 * 104.22246 * 142.79979 * 18 16 14 20 20 C 1.54990 * 102.81543 * 322.27241 * 19 18 16 21 21 C 1.53485 * 110.06930 * 215.16210 * 16 14 12 22 22 C 1.52567 * 121.05127 * 96.54244 * 21 16 14 23 23 C 1.52547 * 121.08735 * 24.82669 * 21 16 14 24 24 H 1.09001 * 109.47046 * 294.95506 * 1 2 3 25 25 H 1.08993 * 109.47246 * 54.95870 * 1 2 3 26 26 H 1.09000 * 109.47174 * 174.96146 * 1 2 3 27 27 H 0.96999 * 120.00369 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46934 * 95.36688 * 13 12 2 29 29 H 1.08998 * 109.47056 * 215.36370 * 13 12 2 30 30 H 1.08997 * 109.47492 * 335.36596 * 13 12 2 31 31 H 1.09004 * 110.48123 * 261.48349 * 18 16 14 32 32 H 1.08999 * 110.48322 * 24.11405 * 18 16 14 33 33 H 1.09001 * 110.74060 * 203.94061 * 19 18 16 34 34 H 1.09005 * 110.89750 * 80.67759 * 19 18 16 35 35 H 1.08996 * 110.51389 * 278.92198 * 20 19 18 36 36 H 1.09001 * 110.50562 * 156.21502 * 20 19 18 37 37 H 1.08994 * 117.51665 * 356.97433 * 22 21 16 38 38 H 1.09003 * 117.50375 * 142.06717 * 22 21 16 39 39 H 1.08997 * 117.50956 * 217.89086 * 23 21 16 40 40 H 1.09000 * 117.50793 * 2.93695 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3580 7 7 2.7050 -0.6131 -3.4625 8 14 2.3152 1.8791 -2.3169 9 1 3.6025 2.3938 -1.7846 10 1 2.1045 2.3995 -3.6917 11 1 1.2027 2.3283 -1.4416 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0075 1.1497 1.9422 16 6 3.3934 -0.7761 3.2506 17 1 2.8062 -1.6681 3.4691 18 6 4.8539 -1.1655 2.9368 19 6 5.5931 -0.9903 4.2870 20 6 4.9229 0.2730 4.8845 21 6 3.4435 0.1365 4.4837 22 6 2.3482 0.0868 5.5446 23 6 2.4813 1.3105 4.6344 24 1 -0.3633 0.4336 0.9317 25 1 -0.3633 0.5900 -0.8413 26 1 -0.3633 -1.0237 -0.0903 27 1 2.9354 -0.1049 -4.2559 28 1 2.4625 -2.7356 1.0558 29 1 1.5305 -2.2622 2.4965 30 1 0.7371 -2.3253 0.9044 31 1 4.9092 -2.2018 2.6033 32 1 5.2729 -0.4986 2.1833 33 1 6.6579 -0.8225 4.1252 34 1 5.4336 -1.8540 4.9325 35 1 5.3542 1.1754 4.4514 36 1 5.0252 0.2825 5.9697 37 1 1.5064 -0.5827 5.3683 38 1 2.6505 0.1987 6.5859 39 1 2.8710 2.2273 5.0769 40 1 1.7273 1.4462 3.8590 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528419114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:02 Heat of formation + Delta-G solvation = -37.711356 kcal Electronic energy + Delta-G solvation = -19627.908401 eV Core-core repulsion = 16828.251626 eV Total energy + Delta-G solvation = -2799.656775 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.49443 -39.12438 -37.00570 -35.16162 -34.66547 -32.46990 -29.85193 -27.69440 -27.25788 -26.69122 -23.46875 -23.26562 -21.73465 -20.53090 -19.32073 -18.99636 -17.99365 -17.15433 -16.44523 -16.29738 -15.93460 -15.68241 -15.06540 -14.66366 -14.26674 -14.25921 -14.09808 -13.56561 -13.44311 -13.41058 -13.10379 -12.98843 -12.61674 -12.42921 -12.32816 -12.25878 -11.95470 -11.87649 -11.76859 -11.56320 -11.30275 -11.11231 -10.82546 -10.73456 -10.28041 -9.31647 -8.40418 -6.43337 1.22476 1.28601 1.37385 1.79627 2.23310 2.28429 2.90833 3.05209 3.40125 3.70863 3.82644 3.97654 4.09005 4.25680 4.28612 4.36026 4.45824 4.51434 4.65852 4.70982 4.71717 4.78841 4.80860 4.84990 4.91615 4.98383 5.03142 5.08618 5.11239 5.15467 5.19075 5.28999 5.30998 5.35943 5.45512 5.51254 5.83465 6.15388 6.61477 6.79739 7.21981 7.44008 8.75138 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.006931 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.849737 B = 4038.920100 C = 4102.188702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.222 3.778 3 H 0.036 0.964 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.923 3.077 9 H -0.287 1.287 10 H -0.274 1.274 11 H -0.254 1.254 12 N -0.601 5.601 13 C 0.083 3.917 14 C 0.503 3.497 15 O -0.595 6.595 16 C -0.075 4.075 17 H 0.116 0.884 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.084 4.084 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.176 4.176 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.268 0.732 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -2.959 19.274 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.119 3.881 3 H 0.054 0.946 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.169 4.169 7 N -0.572 5.572 8 Si 0.749 3.251 9 H -0.213 1.213 10 H -0.200 1.200 11 H -0.178 1.178 12 N -0.332 5.332 13 C -0.060 4.060 14 C 0.292 3.708 15 O -0.476 6.476 16 C -0.096 4.096 17 H 0.134 0.866 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.177 4.177 23 C -0.213 4.213 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.656 -2.346 18.975 19.131 hybrid contribution 0.054 1.043 -1.165 1.565 sum 0.710 -1.302 17.810 17.872 Atomic orbital electron populations 1.22072 0.96056 1.01807 0.99792 1.19079 0.92536 0.93365 0.83122 0.94605 1.21361 1.43435 0.94766 0.96046 0.92807 1.25583 0.94220 1.01913 0.95204 1.69976 1.47430 1.37415 1.02392 0.86113 0.79312 0.82169 0.77478 1.21294 1.19981 1.17815 1.48333 1.49484 1.13312 1.22047 1.21821 1.01330 0.80666 1.02158 1.21269 0.77969 0.87255 0.84273 1.90586 1.62297 1.17745 1.77008 1.21582 0.98535 0.98600 0.90899 0.86639 1.22278 0.92081 1.01576 0.98914 1.22448 0.99146 0.98341 0.94548 1.21875 0.90982 0.98069 1.01248 1.21593 0.93906 1.00594 0.96534 1.23162 0.99020 0.99429 0.96126 1.22769 1.02379 0.93621 1.02508 0.93658 0.93348 0.91702 0.92235 0.93205 0.88779 0.90760 0.89524 0.94494 0.90469 0.88623 0.93126 0.89046 0.88139 0.86213 0.88835 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 9.06 71.98 0.65 -5.14 16 2 C 0.22 10.84 2.29 44.25 0.10 10.94 16 3 H 0.04 1.96 4.06 -2.39 -0.01 1.95 16 4 C -0.52 -29.17 8.82 25.60 0.23 -28.94 16 5 H 0.05 3.22 7.67 -2.91 -0.02 3.20 16 6 C 0.03 1.79 5.47 84.66 0.46 2.25 16 7 N -0.93 -57.62 13.96 21.45 0.30 -57.32 16 8 Si 0.92 47.40 26.99 68.60 1.85 49.25 16 9 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 10 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.25 -12.50 6.81 99.48 0.68 -11.82 16 12 N -0.60 -24.96 2.75 -826.80 -2.28 -27.24 16 13 C 0.08 2.59 9.08 127.77 1.16 3.75 16 14 C 0.50 20.53 5.80 87.66 0.51 21.04 16 15 O -0.59 -29.39 14.24 -3.04 -0.04 -29.44 16 16 C -0.08 -2.20 2.74 -10.91 -0.03 -2.23 16 17 H 0.12 2.72 5.76 -2.39 -0.01 2.70 16 18 C -0.11 -3.03 6.36 31.72 0.20 -2.83 16 19 C -0.11 -2.15 6.91 31.93 0.22 -1.93 16 20 C -0.08 -1.88 6.58 31.57 0.21 -1.67 16 21 C -0.13 -3.27 2.06 -52.02 -0.11 -3.37 16 22 C -0.14 -2.85 10.23 30.48 0.31 -2.54 16 23 C -0.18 -5.03 8.93 30.47 0.27 -4.76 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 2.48 6.87 -2.39 -0.02 2.46 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.09 2.14 6.20 -2.39 -0.01 2.13 16 30 H 0.07 2.31 6.54 -2.39 -0.02 2.29 16 31 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.04 1.27 7.85 -2.39 -0.02 1.26 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.06 2.27 6.80 -2.39 -0.02 2.26 16 Total: -1.00 -72.04 312.88 5.00 -67.04 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.98 Total: 13.13 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.19 Total: -15.43 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.98 Total: -84.56 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.04 Total: -29.44 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.85 Total: 49.25 kcal Total: -72.04 5.00 -67.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528419114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.326 kcal (2) G-P(sol) polarization free energy of solvation -72.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds