Wall clock time and date at job start Mon Mar 30 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99772 * 2 1 4 4 C 1.50703 * 109.47029 * 270.00138 * 3 2 1 5 5 H 1.08006 * 120.00159 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00089 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.34783 * 120.00361 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00050 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99744 * 359.97438 * 12 2 1 15 15 H 1.08994 * 115.55072 * 325.72541 * 14 12 2 16 16 C 1.53004 * 117.49612 * 111.39063 * 14 12 2 17 17 C 1.52997 * 117.49686 * 180.02562 * 14 12 2 18 18 H 1.09002 * 117.49702 * 145.02126 * 17 14 12 19 19 C 1.53003 * 117.50157 * 0.02562 * 17 14 12 20 20 C 1.54258 * 110.03416 * 177.90466 * 19 17 14 21 21 C 1.54964 * 104.16160 * 217.13519 * 20 19 17 22 22 C 1.54889 * 102.77741 * 37.88496 * 21 20 19 23 23 C 1.53876 * 110.03362 * 60.68467 * 19 17 14 24 24 H 1.08999 * 109.47231 * 90.00301 * 1 2 3 25 25 H 1.09006 * 109.46659 * 209.99993 * 1 2 3 26 26 H 1.09001 * 109.47600 * 329.99990 * 1 2 3 27 27 H 1.09003 * 109.46930 * 150.00403 * 3 2 1 28 28 H 1.08996 * 109.47301 * 29.99971 * 3 2 1 29 29 H 0.96998 * 119.99255 * 0.02562 * 7 6 4 30 30 H 1.08993 * 117.49770 * 214.97924 * 16 14 12 31 31 H 1.09002 * 117.49768 * 359.97438 * 16 14 12 32 32 H 1.09001 * 110.01363 * 299.29616 * 19 17 14 33 33 H 1.09003 * 110.48717 * 335.78485 * 20 19 17 34 34 H 1.09010 * 110.48836 * 98.42380 * 20 19 17 35 35 H 1.09004 * 110.71530 * 279.57700 * 21 20 19 36 36 H 1.08999 * 110.76752 * 156.22449 * 21 20 19 37 37 H 1.09000 * 110.48823 * 203.40525 * 22 21 20 38 38 H 1.09000 * 110.48278 * 80.76215 * 22 21 20 39 39 H 1.08999 * 110.02942 * 238.57526 * 23 19 17 40 40 H 1.09001 * 110.03063 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2418 6 6 3.1267 2.8775 -1.6728 7 7 3.5540 3.6177 -0.6733 8 14 3.4373 3.4171 -3.4340 9 1 4.7319 2.8596 -3.9016 10 1 3.4857 4.9000 -3.4962 11 1 2.3413 2.9207 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 1 0.4469 -2.4733 0.5536 16 6 1.4605 -3.3313 -1.2645 17 6 2.2076 -3.7626 -0.0005 18 1 1.8099 -4.6128 0.5538 19 6 3.7318 -3.6292 0.0001 20 6 4.3845 -5.0259 0.0530 21 6 5.6270 -4.8297 0.9580 22 6 5.1126 -3.8451 2.0373 23 6 4.1947 -2.8784 1.2610 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.3924 3.3376 0.2412 30 1 0.5714 -3.8977 -1.5415 31 1 2.0545 -2.9522 -2.0961 32 1 4.0601 -3.0972 -0.8929 33 1 3.7007 -5.7500 0.4959 34 1 4.6851 -5.3446 -0.9452 35 1 6.4493 -4.3893 0.3939 36 1 5.9293 -5.7745 1.4096 37 1 5.9446 -3.3029 2.4868 38 1 4.5463 -4.3781 2.8011 39 1 4.7483 -1.9826 0.9799 40 1 3.3335 -2.6095 1.8727 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593418048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:40 Heat of formation + Delta-G solvation = -18.785921 kcal Electronic energy + Delta-G solvation = -19266.033356 eV Core-core repulsion = 16467.197249 eV Total energy + Delta-G solvation = -2798.836106 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96488 -37.65831 -35.53740 -34.77635 -32.77043 -28.61171 -28.26237 -27.59238 -25.81245 -23.94312 -22.09587 -21.74297 -20.43561 -19.61116 -17.92411 -16.94115 -16.62668 -15.51499 -15.48810 -14.69044 -14.30893 -14.13536 -13.70884 -13.20538 -12.98841 -12.57892 -12.35977 -12.27372 -11.92932 -11.71087 -11.45480 -11.25938 -10.98947 -10.89878 -10.85713 -10.58635 -10.49856 -10.47654 -10.11561 -9.98384 -9.72625 -9.61321 -9.06540 -8.68652 -8.36822 -7.52659 -6.36950 -4.08570 3.19779 3.44116 3.47622 3.62528 3.82632 4.18856 4.54361 4.71128 4.93173 4.95450 5.09280 5.13888 5.20091 5.31756 5.39528 5.63107 5.65963 5.72804 5.84103 5.86076 5.88510 5.94039 5.97363 6.04965 6.08308 6.14410 6.17619 6.22923 6.39899 6.44632 6.67306 6.82672 6.85231 7.07545 7.14587 7.49096 8.06213 8.35261 8.46779 8.80193 9.13630 9.61130 11.00261 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.006090 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.840987 B = 4596.718669 C = 5000.318321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.597 5.597 3 C 0.237 3.763 4 C -0.603 4.603 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 1.074 2.926 9 H -0.287 1.287 10 H -0.284 1.284 11 H -0.290 1.290 12 C 0.529 3.471 13 O -0.526 6.526 14 C -0.188 4.188 15 H 0.115 0.885 16 C -0.153 4.153 17 C -0.112 4.112 18 H 0.104 0.896 19 C -0.048 4.048 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.090 4.090 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.019 0.981 29 H 0.267 0.733 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -15.744 2.775 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.329 5.329 3 C 0.117 3.883 4 C -0.642 4.642 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.547 5.547 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.209 1.209 11 H -0.216 1.216 12 C 0.316 3.684 13 O -0.404 6.404 14 C -0.209 4.209 15 H 0.132 0.868 16 C -0.190 4.190 17 C -0.131 4.131 18 H 0.122 0.878 19 C -0.066 4.066 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.173 4.173 23 C -0.128 4.128 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.946 -14.494 1.860 14.907 hybrid contribution -1.109 -1.122 0.913 1.823 sum -4.055 -15.616 2.772 16.371 Atomic orbital electron populations 1.21604 0.81492 1.01311 1.01157 1.47886 1.06044 1.07324 1.71629 1.19328 0.91938 0.78988 0.98044 1.22267 1.40474 1.09456 0.91987 0.93140 1.25797 0.93387 0.93334 1.05988 1.70773 1.44246 1.39635 1.00087 0.83480 0.76292 0.76166 0.73884 1.21384 1.20922 1.21574 1.19396 0.87635 0.83922 0.77461 1.90666 1.13323 1.86593 1.49769 1.22363 1.01915 0.91874 1.04735 0.86756 1.23024 1.02680 1.01655 0.91681 1.22488 0.94653 0.95579 1.00336 0.87776 1.21269 0.90675 0.94348 1.00320 1.22497 0.96892 0.97233 0.99190 1.22471 0.97730 0.98641 0.97233 1.22557 0.99396 0.97719 0.97631 1.22211 0.98445 0.97921 0.94205 0.93264 0.92479 0.91817 0.94871 0.96313 0.92239 0.88512 0.88313 0.90146 0.92135 0.92247 0.91724 0.92445 0.92399 0.92707 0.89347 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.31 59.84 0.62 2.09 16 2 N -0.60 -12.94 2.86 -182.95 -0.52 -13.46 16 3 C 0.24 6.23 4.52 -5.19 -0.02 6.21 16 4 C -0.60 -17.49 9.39 -34.44 -0.32 -17.81 16 5 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 6 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 7 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 8 Si 1.07 25.97 29.90 -169.99 -5.08 20.88 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.53 10.93 6.93 -10.98 -0.08 10.85 16 13 O -0.53 -12.38 9.88 5.56 0.05 -12.32 16 14 C -0.19 -2.89 4.99 -91.77 -0.46 -3.35 16 15 H 0.11 1.49 6.44 -51.93 -0.33 1.16 16 16 C -0.15 -2.09 9.89 -26.71 -0.26 -2.35 16 17 C -0.11 -1.54 4.99 -90.61 -0.45 -2.00 16 18 H 0.10 1.21 7.81 -51.93 -0.41 0.80 16 19 C -0.05 -0.73 2.26 -89.50 -0.20 -0.93 16 20 C -0.12 -1.50 6.37 -25.04 -0.16 -1.66 16 21 C -0.12 -1.52 6.91 -24.70 -0.17 -1.69 16 22 C -0.14 -1.85 6.83 -25.07 -0.17 -2.02 16 23 C -0.09 -1.51 4.40 -25.62 -0.11 -1.62 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.75 6.00 -51.93 -0.31 0.44 16 26 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 27 H 0.03 0.96 7.29 -51.93 -0.38 0.58 16 28 H 0.02 0.50 7.76 -51.93 -0.40 0.10 16 29 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.53 8.06 -51.93 -0.42 1.11 16 32 H 0.08 1.46 7.10 -51.93 -0.37 1.09 16 33 H 0.06 0.68 7.64 -51.93 -0.40 0.28 16 34 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.79 6.32 -51.93 -0.33 1.46 16 40 H 0.05 0.87 6.95 -51.93 -0.36 0.51 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -32.15 312.14 -8.56 -40.71 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.58 Total: 0.60 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.89 Total: -13.82 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.23 Total: -40.76 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.05 Total: -12.32 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.15 -8.56 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593418048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.924 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds