Wall clock time and date at job start Mon Mar 30 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99772 * 2 1 4 4 C 1.50703 * 109.47029 * 270.00138 * 3 2 1 5 5 H 1.08006 * 120.00159 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00089 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.34783 * 120.00361 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00050 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99744 * 359.97438 * 12 2 1 15 15 H 1.08994 * 115.55072 * 325.72541 * 14 12 2 16 16 C 1.53004 * 117.49612 * 111.39063 * 14 12 2 17 17 C 1.52997 * 117.49686 * 180.02562 * 14 12 2 18 18 H 1.09002 * 117.49702 * 145.02126 * 17 14 12 19 19 C 1.53003 * 117.50157 * 0.02562 * 17 14 12 20 20 C 1.54258 * 110.03416 * 177.90466 * 19 17 14 21 21 C 1.54964 * 104.16160 * 217.13519 * 20 19 17 22 22 C 1.54889 * 102.77741 * 37.88496 * 21 20 19 23 23 C 1.53876 * 110.03362 * 60.68467 * 19 17 14 24 24 H 1.08999 * 109.47231 * 90.00301 * 1 2 3 25 25 H 1.09006 * 109.46659 * 209.99993 * 1 2 3 26 26 H 1.09001 * 109.47600 * 329.99990 * 1 2 3 27 27 H 1.09003 * 109.46930 * 150.00403 * 3 2 1 28 28 H 1.08996 * 109.47301 * 29.99971 * 3 2 1 29 29 H 0.96998 * 119.99255 * 0.02562 * 7 6 4 30 30 H 1.08993 * 117.49770 * 214.97924 * 16 14 12 31 31 H 1.09002 * 117.49768 * 359.97438 * 16 14 12 32 32 H 1.09001 * 110.01363 * 299.29616 * 19 17 14 33 33 H 1.09003 * 110.48717 * 335.78485 * 20 19 17 34 34 H 1.09010 * 110.48836 * 98.42380 * 20 19 17 35 35 H 1.09004 * 110.71530 * 279.57700 * 21 20 19 36 36 H 1.08999 * 110.76752 * 156.22449 * 21 20 19 37 37 H 1.09000 * 110.48823 * 203.40525 * 22 21 20 38 38 H 1.09000 * 110.48278 * 80.76215 * 22 21 20 39 39 H 1.08999 * 110.02942 * 238.57526 * 23 19 17 40 40 H 1.09001 * 110.03063 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2418 6 6 3.1267 2.8775 -1.6728 7 7 3.5540 3.6177 -0.6733 8 14 3.4373 3.4171 -3.4340 9 1 4.7319 2.8596 -3.9016 10 1 3.4857 4.9000 -3.4962 11 1 2.3413 2.9207 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 1 0.4469 -2.4733 0.5536 16 6 1.4605 -3.3313 -1.2645 17 6 2.2076 -3.7626 -0.0005 18 1 1.8099 -4.6128 0.5538 19 6 3.7318 -3.6292 0.0001 20 6 4.3845 -5.0259 0.0530 21 6 5.6270 -4.8297 0.9580 22 6 5.1126 -3.8451 2.0373 23 6 4.1947 -2.8784 1.2610 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.3924 3.3376 0.2412 30 1 0.5714 -3.8977 -1.5415 31 1 2.0545 -2.9522 -2.0961 32 1 4.0601 -3.0972 -0.8929 33 1 3.7007 -5.7500 0.4959 34 1 4.6851 -5.3446 -0.9452 35 1 6.4493 -4.3893 0.3939 36 1 5.9293 -5.7745 1.4096 37 1 5.9446 -3.3029 2.4868 38 1 4.5463 -4.3781 2.8011 39 1 4.7483 -1.9826 0.9799 40 1 3.3335 -2.6095 1.8727 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593418048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:40 Heat of formation + Delta-G solvation = -37.631656 kcal Electronic energy + Delta-G solvation = -19266.850568 eV Core-core repulsion = 16467.197249 eV Total energy + Delta-G solvation = -2799.653319 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38834 -39.03685 -36.86548 -36.44516 -34.91214 -29.98344 -29.44822 -29.29961 -27.34033 -25.84923 -23.77227 -22.88587 -21.50746 -20.95460 -19.46427 -19.00841 -18.08128 -17.08372 -16.66444 -16.16002 -15.87216 -15.62075 -15.55303 -14.58447 -14.29145 -14.17949 -13.82704 -13.67382 -13.58428 -13.31409 -13.09356 -12.78412 -12.55892 -12.50968 -12.05309 -11.97394 -11.90385 -11.73293 -11.51366 -11.27638 -11.18302 -10.89458 -10.80137 -10.64700 -10.29636 -9.37985 -8.71323 -6.47913 1.45684 1.55190 1.70993 1.73642 2.27707 2.50985 2.91893 3.06750 3.55322 3.72144 3.83497 3.92627 4.04635 4.07475 4.15567 4.40570 4.56626 4.57527 4.63925 4.65939 4.73977 4.81372 4.84027 4.85425 4.88323 4.92579 4.94882 5.01502 5.08685 5.17582 5.26370 5.37874 5.49924 5.54129 5.64909 5.75482 5.80179 6.13131 6.42229 6.74155 7.28836 7.52742 8.62193 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.006090 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.840987 B = 4596.718669 C = 5000.318321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.610 5.610 3 C 0.249 3.751 4 C -0.613 4.613 5 H 0.041 0.959 6 C -0.032 4.032 7 N -0.932 5.932 8 Si 1.120 2.880 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.268 1.268 12 C 0.513 3.487 13 O -0.567 6.567 14 C -0.196 4.196 15 H 0.149 0.851 16 C -0.139 4.139 17 C -0.103 4.103 18 H 0.144 0.856 19 C -0.051 4.051 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.087 4.087 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.065 0.935 27 H -0.008 1.008 28 H 0.014 0.986 29 H 0.255 0.745 30 H 0.140 0.860 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -18.671 2.285 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.342 5.342 3 C 0.127 3.873 4 C -0.652 4.652 5 H 0.060 0.940 6 C -0.230 4.230 7 N -0.569 5.569 8 Si 0.941 3.059 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.192 1.192 12 C 0.303 3.697 13 O -0.447 6.447 14 C -0.217 4.217 15 H 0.167 0.833 16 C -0.176 4.176 17 C -0.121 4.121 18 H 0.162 0.838 19 C -0.069 4.069 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.169 4.169 23 C -0.125 4.125 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.010 0.990 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.158 0.842 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.850 -17.451 1.384 18.165 hybrid contribution -0.490 -0.195 1.113 1.231 sum -5.339 -17.646 2.496 18.604 Atomic orbital electron populations 1.21862 0.78228 1.03626 1.02047 1.47973 1.08132 1.05986 1.72091 1.18831 0.90801 0.81457 0.96252 1.22535 1.40330 1.09436 0.92879 0.94033 1.27370 0.92655 0.93603 1.09401 1.70899 1.45662 1.40360 0.99955 0.82904 0.77089 0.76448 0.69437 1.20687 1.19858 1.19231 1.20496 0.87697 0.85437 0.76114 1.90698 1.15482 1.87422 1.51098 1.22338 1.02988 0.89141 1.07237 0.83306 1.23121 1.03675 1.00559 0.90240 1.22655 0.93142 0.95530 1.00779 0.83808 1.21194 0.92680 0.95625 0.97448 1.22465 0.97001 0.95514 0.99906 1.22484 0.97408 0.99315 0.96656 1.22529 0.98774 0.97397 0.98189 1.22024 0.98003 0.97057 0.95385 0.92975 0.88116 0.91614 0.98989 0.96796 0.93614 0.84241 0.91097 0.94470 0.89347 0.91599 0.93035 0.89571 0.93062 0.90516 0.94542 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.70 10.31 127.77 1.32 4.01 16 2 N -0.61 -27.05 2.86 -851.12 -2.43 -29.48 16 3 C 0.25 13.81 4.52 85.63 0.39 14.20 16 4 C -0.61 -36.85 9.39 25.60 0.24 -36.61 16 5 H 0.04 2.51 7.81 -2.91 -0.02 2.49 16 6 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 7 N -0.93 -59.36 13.65 21.45 0.29 -59.07 16 8 Si 1.12 52.65 29.90 68.60 2.05 54.70 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 C 0.51 21.72 6.93 87.66 0.61 22.33 16 13 O -0.57 -28.62 9.88 -3.02 -0.03 -28.65 16 14 C -0.20 -5.61 4.99 -11.54 -0.06 -5.67 16 15 H 0.15 3.20 6.44 -2.39 -0.02 3.19 16 16 C -0.14 -3.38 9.89 30.61 0.30 -3.08 16 17 C -0.10 -2.54 4.99 -10.78 -0.05 -2.59 16 18 H 0.14 2.50 7.81 -2.39 -0.02 2.49 16 19 C -0.05 -1.54 2.26 -10.07 -0.02 -1.57 16 20 C -0.11 -2.49 6.37 31.69 0.20 -2.29 16 21 C -0.12 -2.76 6.91 31.91 0.22 -2.54 16 22 C -0.13 -3.49 6.83 31.67 0.22 -3.27 16 23 C -0.09 -3.02 4.40 31.32 0.14 -2.88 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.10 2.30 6.00 -2.38 -0.01 2.29 16 26 H 0.07 2.04 7.89 -2.39 -0.02 2.02 16 27 H -0.01 -0.50 7.29 -2.39 -0.02 -0.52 16 28 H 0.01 0.78 7.76 -2.39 -0.02 0.77 16 29 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 30 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 32 H 0.04 1.43 7.10 -2.39 -0.02 1.41 16 33 H 0.09 1.53 7.64 -2.39 -0.02 1.51 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.62 6.32 -2.39 -0.02 1.61 16 40 H 0.04 1.37 6.95 -2.39 -0.02 1.35 16 Total: -1.00 -75.92 312.14 4.94 -70.98 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.10 Total: 12.95 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 3.96 Total: -21.43 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.14 Total: -88.55 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.03 Total: -28.65 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.70 kcal Total: -75.92 4.94 -70.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593418048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.344 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds