Wall clock time and date at job start Mon Mar 30 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47417 * 2 1 4 4 C 1.50706 * 109.46848 * 239.99554 * 2 1 3 5 5 H 1.07999 * 120.00159 * 275.00384 * 4 2 1 6 6 C 1.37878 * 119.99547 * 95.00600 * 4 2 1 7 7 N 1.31520 * 119.99618 * 184.91232 * 6 4 2 8 8 Si 1.86801 * 120.00191 * 4.91310 * 6 4 2 9 9 H 1.48505 * 109.46981 * 84.83789 * 8 6 4 10 10 H 1.48506 * 109.47043 * 204.83327 * 8 6 4 11 11 H 1.48497 * 109.47171 * 324.83445 * 8 6 4 12 12 N 1.46506 * 109.47023 * 120.00148 * 2 1 3 13 13 C 1.34775 * 119.99371 * 274.71751 * 12 2 1 14 14 O 1.21280 * 120.00722 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99473 * 179.97438 * 13 12 2 16 16 H 1.08997 * 115.54758 * 34.42300 * 15 13 12 17 17 C 1.52990 * 117.49952 * 248.74963 * 15 13 12 18 18 C 1.52996 * 117.49530 * 180.08859 * 15 13 12 19 19 H 1.09002 * 117.50415 * 0.02562 * 18 15 13 20 20 C 1.53006 * 117.49922 * 215.00455 * 18 15 13 21 21 C 1.54266 * 110.03298 * 177.17020 * 20 18 15 22 22 C 1.54889 * 104.19431 * 217.10486 * 21 20 18 23 23 C 1.54889 * 102.74831 * 37.94473 * 22 21 20 24 24 C 1.53875 * 110.03094 * 60.00155 * 20 18 15 25 25 H 1.09003 * 109.46824 * 295.04071 * 1 2 3 26 26 H 1.09001 * 109.46717 * 55.03676 * 1 2 3 27 27 H 1.08995 * 109.47557 * 175.04004 * 1 2 3 28 28 H 0.97001 * 119.99582 * 179.97438 * 7 6 4 29 29 H 0.96992 * 119.99931 * 94.99839 * 12 2 1 30 30 H 1.09004 * 117.50567 * 0.02562 * 17 15 13 31 31 H 1.09001 * 117.49977 * 145.02713 * 17 15 13 32 32 H 1.09005 * 110.01435 * 298.61196 * 20 18 15 33 33 H 1.09004 * 110.48563 * 335.78164 * 21 20 18 34 34 H 1.08998 * 110.49037 * 98.42919 * 21 20 18 35 35 H 1.09002 * 110.75683 * 279.62764 * 22 21 20 36 36 H 1.09000 * 110.75476 * 156.25626 * 22 21 20 37 37 H 1.09005 * 110.48640 * 203.38071 * 23 22 21 38 38 H 1.09001 * 110.48994 * 80.73658 * 23 22 21 39 39 H 1.08999 * 110.03528 * 238.57092 * 24 20 18 40 40 H 1.09004 * 110.03489 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6134 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7823 10 1 2.1059 2.3990 -3.6929 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6907 1.1962 13 6 2.1524 -0.0169 2.3557 14 8 1.8684 1.1610 2.4091 15 6 2.6542 -0.7274 3.5864 16 1 3.3958 -1.5064 3.4098 17 6 1.6628 -0.9424 4.7315 18 6 2.7824 0.0918 4.8721 19 1 2.5035 1.1446 4.8281 20 6 3.9420 -0.2451 5.8118 21 6 3.9497 0.7255 7.0108 22 6 5.4530 0.9741 7.2886 23 6 6.0598 1.0260 5.8645 24 6 5.2836 -0.0541 5.0829 25 1 -0.3633 0.4350 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3634 -1.0237 -0.0888 28 1 2.9363 -0.1051 -4.2556 29 1 2.2490 -1.6318 1.1526 30 1 0.6473 -0.5703 4.5949 31 1 1.7524 -1.8627 5.3088 32 1 3.8509 -1.2730 6.1631 33 1 3.4507 1.6587 6.7494 34 1 3.4726 0.2663 7.8766 35 1 5.8812 0.1513 7.8612 36 1 5.5987 1.9227 7.8054 37 1 7.1226 0.7859 5.8936 38 1 5.9016 2.0077 5.4179 39 1 5.8441 -0.9889 5.0813 40 1 5.1087 0.2791 4.0599 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593437673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:40 Heat of formation + Delta-G solvation = -43.968489 kcal Electronic energy + Delta-G solvation = -18531.392043 eV Core-core repulsion = 15731.463939 eV Total energy + Delta-G solvation = -2799.928104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72288 -38.22508 -35.73215 -34.61730 -32.31778 -29.90233 -28.78988 -28.61153 -25.32118 -24.02620 -21.98930 -20.89864 -20.48640 -19.50675 -19.20989 -17.46783 -16.24268 -15.93995 -15.47531 -15.08114 -14.35422 -14.21857 -13.71466 -13.40735 -13.31161 -12.56857 -12.51418 -12.22836 -12.08837 -11.77869 -11.47121 -11.23101 -11.17760 -11.12008 -11.10093 -10.81446 -10.77870 -10.58801 -10.43354 -10.05190 -9.87222 -9.83969 -9.19382 -9.08571 -8.69024 -8.04805 -6.23000 -4.26489 3.09287 3.27322 3.34458 3.42156 3.87327 4.07516 4.33223 4.52532 4.59476 4.65787 4.99214 5.00980 5.10777 5.21076 5.38434 5.41944 5.50114 5.54591 5.56545 5.62984 5.69364 5.76997 5.81008 5.88873 6.02370 6.09845 6.15904 6.25324 6.33911 6.36291 6.45018 6.53741 6.69329 6.95574 7.21251 7.40284 7.58460 8.16627 8.61569 8.78023 9.04566 9.39500 10.88809 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.004838 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.662425 B = 5786.696863 C = 6144.692632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.700 5.700 13 C 0.529 3.471 14 O -0.562 6.562 15 C -0.184 4.184 16 H 0.118 0.882 17 C -0.152 4.152 18 C -0.114 4.114 19 H 0.116 0.884 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.123 4.123 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.394 0.606 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 -0.483 19.345 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.347 5.347 13 C 0.314 3.686 14 O -0.442 6.442 15 C -0.205 4.205 16 H 0.136 0.864 17 C -0.190 4.190 18 C -0.132 4.132 19 H 0.134 0.866 20 C -0.080 4.080 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.227 0.773 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.993 0.371 19.117 19.354 hybrid contribution 0.151 0.355 -0.337 0.512 sum 3.144 0.725 18.780 19.055 Atomic orbital electron populations 1.22211 0.98651 1.00539 0.99159 1.19129 0.90902 0.94338 0.82865 0.93277 1.21024 1.45185 0.95635 0.94973 0.90337 1.24941 0.93613 0.98630 0.95147 1.69888 1.44843 1.36176 1.01682 0.86890 0.79809 0.85865 0.77312 1.19859 1.21163 1.18517 1.46562 1.64639 1.13770 1.09776 1.19632 0.78011 0.86888 0.84056 1.90623 1.52231 1.16098 1.85243 1.22367 1.04313 1.04122 0.89690 0.86365 1.23042 0.95556 1.00789 0.99611 1.22499 0.97248 0.98066 0.95419 0.86621 1.21390 0.93248 0.99221 0.94093 1.22423 0.96351 0.99463 0.97212 1.22505 0.95685 1.01175 0.96950 1.22362 0.99064 0.99475 0.95384 1.22234 0.94911 0.98789 1.00074 0.95315 0.92955 0.93416 0.92253 0.77319 0.88534 0.88299 0.90998 0.91222 0.91808 0.91744 0.91819 0.91970 0.91582 0.91984 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.47 37.16 0.35 -2.94 16 2 C 0.23 5.60 2.23 -69.08 -0.15 5.45 16 3 H 0.05 1.31 4.72 -51.93 -0.25 1.06 16 4 C -0.53 -14.44 9.05 -34.44 -0.31 -14.76 16 5 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 8 Si 0.87 21.88 26.99 -169.99 -4.59 17.30 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.45 6.82 56.52 0.39 -6.07 16 12 N -0.70 -14.50 5.07 -54.93 -0.28 -14.78 16 13 C 0.53 10.46 7.58 -10.98 -0.08 10.38 16 14 O -0.56 -13.17 15.92 5.56 0.09 -13.08 16 15 C -0.18 -2.68 5.25 -91.78 -0.48 -3.16 16 16 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 17 C -0.15 -1.86 9.89 -26.70 -0.26 -2.13 16 18 C -0.11 -1.48 4.52 -90.58 -0.41 -1.89 16 19 H 0.12 1.74 7.32 -51.93 -0.38 1.36 16 20 C -0.06 -0.64 3.11 -89.50 -0.28 -0.92 16 21 C -0.12 -1.10 6.36 -25.07 -0.16 -1.26 16 22 C -0.13 -1.09 6.91 -24.74 -0.17 -1.26 16 23 C -0.13 -1.24 6.83 -25.07 -0.17 -1.41 16 24 C -0.12 -1.34 6.25 -25.61 -0.16 -1.50 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.39 7.21 8.59 -40.82 -0.35 6.86 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.10 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 33 H 0.07 0.70 7.63 -51.93 -0.40 0.31 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.94 7.32 -51.93 -0.38 0.56 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -31.01 323.38 -8.33 -39.34 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.81 Total: 5.16 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.39 Total: -13.21 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.50 Total: -40.38 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.01 -8.33 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.632 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds