Wall clock time and date at job start Mon Mar 30 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47417 * 2 1 4 4 C 1.50706 * 109.46848 * 239.99554 * 2 1 3 5 5 H 1.07999 * 120.00159 * 275.00384 * 4 2 1 6 6 C 1.37878 * 119.99547 * 95.00600 * 4 2 1 7 7 N 1.31520 * 119.99618 * 184.91232 * 6 4 2 8 8 Si 1.86801 * 120.00191 * 4.91310 * 6 4 2 9 9 H 1.48505 * 109.46981 * 84.83789 * 8 6 4 10 10 H 1.48506 * 109.47043 * 204.83327 * 8 6 4 11 11 H 1.48497 * 109.47171 * 324.83445 * 8 6 4 12 12 N 1.46506 * 109.47023 * 120.00148 * 2 1 3 13 13 C 1.34775 * 119.99371 * 274.71751 * 12 2 1 14 14 O 1.21280 * 120.00722 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99473 * 179.97438 * 13 12 2 16 16 H 1.08997 * 115.54758 * 34.42300 * 15 13 12 17 17 C 1.52990 * 117.49952 * 248.74963 * 15 13 12 18 18 C 1.52996 * 117.49530 * 180.08859 * 15 13 12 19 19 H 1.09002 * 117.50415 * 0.02562 * 18 15 13 20 20 C 1.53006 * 117.49922 * 215.00455 * 18 15 13 21 21 C 1.54266 * 110.03298 * 177.17020 * 20 18 15 22 22 C 1.54889 * 104.19431 * 217.10486 * 21 20 18 23 23 C 1.54889 * 102.74831 * 37.94473 * 22 21 20 24 24 C 1.53875 * 110.03094 * 60.00155 * 20 18 15 25 25 H 1.09003 * 109.46824 * 295.04071 * 1 2 3 26 26 H 1.09001 * 109.46717 * 55.03676 * 1 2 3 27 27 H 1.08995 * 109.47557 * 175.04004 * 1 2 3 28 28 H 0.97001 * 119.99582 * 179.97438 * 7 6 4 29 29 H 0.96992 * 119.99931 * 94.99839 * 12 2 1 30 30 H 1.09004 * 117.50567 * 0.02562 * 17 15 13 31 31 H 1.09001 * 117.49977 * 145.02713 * 17 15 13 32 32 H 1.09005 * 110.01435 * 298.61196 * 20 18 15 33 33 H 1.09004 * 110.48563 * 335.78164 * 21 20 18 34 34 H 1.08998 * 110.49037 * 98.42919 * 21 20 18 35 35 H 1.09002 * 110.75683 * 279.62764 * 22 21 20 36 36 H 1.09000 * 110.75476 * 156.25626 * 22 21 20 37 37 H 1.09005 * 110.48640 * 203.38071 * 23 22 21 38 38 H 1.09001 * 110.48994 * 80.73658 * 23 22 21 39 39 H 1.08999 * 110.03528 * 238.57092 * 24 20 18 40 40 H 1.09004 * 110.03489 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6134 -3.4622 8 14 2.3136 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7823 10 1 2.1059 2.3990 -3.6929 11 1 1.1988 2.3274 -1.4450 12 7 2.0183 -0.6907 1.1962 13 6 2.1524 -0.0169 2.3557 14 8 1.8684 1.1610 2.4091 15 6 2.6542 -0.7274 3.5864 16 1 3.3958 -1.5064 3.4098 17 6 1.6628 -0.9424 4.7315 18 6 2.7824 0.0918 4.8721 19 1 2.5035 1.1446 4.8281 20 6 3.9420 -0.2451 5.8118 21 6 3.9497 0.7255 7.0108 22 6 5.4530 0.9741 7.2886 23 6 6.0598 1.0260 5.8645 24 6 5.2836 -0.0541 5.0829 25 1 -0.3633 0.4350 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 -0.3634 -1.0237 -0.0888 28 1 2.9363 -0.1051 -4.2556 29 1 2.2490 -1.6318 1.1526 30 1 0.6473 -0.5703 4.5949 31 1 1.7524 -1.8627 5.3088 32 1 3.8509 -1.2730 6.1631 33 1 3.4507 1.6587 6.7494 34 1 3.4726 0.2663 7.8766 35 1 5.8812 0.1513 7.8612 36 1 5.5987 1.9227 7.8054 37 1 7.1226 0.7859 5.8936 38 1 5.9016 2.0077 5.4179 39 1 5.8441 -0.9889 5.0813 40 1 5.1087 0.2791 4.0599 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593437673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:39 Heat of formation + Delta-G solvation = -62.653904 kcal Electronic energy + Delta-G solvation = -18532.202303 eV Core-core repulsion = 15731.463939 eV Total energy + Delta-G solvation = -2800.738365 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07024 -39.37771 -37.04555 -36.23453 -34.38808 -31.70536 -29.62406 -29.43552 -27.37056 -25.42982 -22.94401 -22.30141 -21.54961 -21.11331 -20.20354 -19.24995 -17.89173 -17.32390 -16.63306 -16.29892 -15.96747 -15.66973 -15.17822 -14.72192 -14.56230 -14.30765 -14.17750 -13.53540 -13.31390 -13.09076 -13.07091 -12.84978 -12.63105 -12.45944 -12.17959 -11.93400 -11.90575 -11.85662 -11.48898 -11.30031 -11.27112 -11.08922 -10.89461 -10.88759 -10.62706 -9.82720 -8.42079 -6.48137 1.25855 1.30374 1.41221 1.63821 2.23969 2.41075 2.88236 3.01590 3.64956 3.70171 3.80127 3.93006 4.05966 4.12875 4.30095 4.44532 4.56179 4.63260 4.64692 4.69780 4.75949 4.79264 4.84901 4.88736 4.89486 5.02756 5.06445 5.10088 5.11513 5.25828 5.33999 5.36070 5.41765 5.42291 5.51309 5.59158 5.73527 6.10382 6.56514 6.90743 7.18154 7.46492 8.73002 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.004838 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.662425 B = 5786.696863 C = 6144.692632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.232 3.768 3 H 0.027 0.973 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.035 3.965 7 N -0.928 5.928 8 Si 0.926 3.074 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.259 1.259 12 N -0.701 5.701 13 C 0.525 3.475 14 O -0.603 6.603 15 C -0.195 4.195 16 H 0.141 0.859 17 C -0.130 4.130 18 C -0.110 4.110 19 H 0.088 0.912 20 C -0.055 4.055 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.125 4.125 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.271 0.729 29 H 0.406 0.594 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -1.158 21.752 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.128 3.872 3 H 0.045 0.955 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.751 3.249 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.183 1.183 12 N -0.349 5.349 13 C 0.313 3.687 14 O -0.486 6.486 15 C -0.216 4.216 16 H 0.158 0.842 17 C -0.167 4.167 18 C -0.129 4.129 19 H 0.106 0.894 20 C -0.074 4.074 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.167 4.167 24 C -0.163 4.163 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.241 0.759 30 H 0.105 0.895 31 H 0.154 0.846 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.127 -0.326 21.541 21.769 hybrid contribution 0.111 0.536 -1.052 1.186 sum 3.238 0.210 20.489 20.744 Atomic orbital electron populations 1.22097 0.97088 1.01303 0.99349 1.18898 0.92045 0.93031 0.83214 0.95500 1.21192 1.44438 0.94844 0.96089 0.92405 1.25582 0.93725 1.02288 0.94979 1.69974 1.46564 1.37709 1.02425 0.86073 0.79555 0.81551 0.77749 1.20156 1.19899 1.18309 1.46347 1.64917 1.14315 1.09301 1.20450 0.76779 0.86495 0.84957 1.90598 1.53929 1.18085 1.85982 1.22287 1.06310 1.05121 0.87881 0.84172 1.23192 0.94423 1.01706 0.97358 1.22513 0.98809 0.96871 0.94737 0.89369 1.21422 0.91596 1.00676 0.93671 1.22435 0.96990 0.98735 0.97332 1.22497 0.94932 1.02180 0.96134 1.22387 0.99744 0.98366 0.96161 1.22250 0.95720 0.99643 0.98659 0.94599 0.93369 0.92235 0.91942 0.75919 0.89515 0.84615 0.88771 0.92613 0.90030 0.90205 0.91192 0.90954 0.93141 0.90607 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 9.47 71.98 0.68 -5.49 16 2 C 0.23 11.30 2.23 44.25 0.10 11.40 16 3 H 0.03 1.44 4.72 -2.39 -0.01 1.43 16 4 C -0.53 -29.01 9.05 25.60 0.23 -28.78 16 5 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 6 C 0.03 1.99 5.47 84.65 0.46 2.45 16 7 N -0.93 -55.70 13.96 21.45 0.30 -55.40 16 8 Si 0.93 45.47 26.99 68.60 1.85 47.33 16 9 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.26 -12.52 6.82 99.48 0.68 -11.84 16 12 N -0.70 -28.78 5.07 -446.08 -2.26 -31.04 16 13 C 0.53 20.60 7.58 87.66 0.66 21.27 16 14 O -0.60 -28.61 15.92 -3.03 -0.05 -28.66 16 15 C -0.20 -5.36 5.25 -11.54 -0.06 -5.42 16 16 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 17 C -0.13 -2.79 9.89 30.61 0.30 -2.49 16 18 C -0.11 -2.70 4.52 -10.77 -0.05 -2.75 16 19 H 0.09 2.68 7.32 -2.39 -0.02 2.66 16 20 C -0.06 -1.02 3.11 -10.07 -0.03 -1.05 16 21 C -0.12 -1.93 6.36 31.67 0.20 -1.72 16 22 C -0.12 -1.78 6.91 31.88 0.22 -1.56 16 23 C -0.13 -2.37 6.83 31.67 0.22 -2.15 16 24 C -0.13 -2.53 6.25 31.32 0.20 -2.34 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.41 14.60 8.59 -92.71 -0.80 13.80 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.14 1.98 8.06 -2.39 -0.02 1.96 16 32 H 0.09 1.37 7.93 -2.38 -0.02 1.35 16 33 H 0.06 1.07 7.63 -2.38 -0.02 1.05 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.12 7.32 -2.39 -0.02 1.11 16 Total: -1.00 -67.47 323.38 3.16 -64.31 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.19 Total: 22.09 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 3.13 Total: -18.62 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.96 Total: -86.44 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.85 Total: 47.33 kcal Total: -67.47 3.16 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.654 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds