Wall clock time and date at job start Mon Mar 30 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50696 * 109.47154 * 240.00347 * 2 1 3 5 5 H 1.08004 * 119.99910 * 245.62805 * 4 2 1 6 6 C 1.37873 * 120.00460 * 65.62816 * 4 2 1 7 7 N 1.31516 * 120.00242 * 197.51474 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 17.50622 * 6 4 2 9 9 H 1.48498 * 109.47073 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47358 * 300.00455 * 8 6 4 11 11 H 1.48503 * 109.46766 * 60.00289 * 8 6 4 12 12 N 1.46498 * 109.47021 * 119.99957 * 2 1 3 13 13 C 1.34773 * 120.00367 * 274.99968 * 12 2 1 14 14 O 1.21282 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00380 * 180.02562 * 13 12 2 16 16 H 1.09004 * 115.54882 * 325.58434 * 15 13 12 17 17 C 1.52995 * 117.50230 * 111.25189 * 15 13 12 18 18 C 1.52995 * 117.50372 * 179.91427 * 15 13 12 19 19 H 1.09009 * 117.49709 * 0.02562 * 18 15 13 20 20 C 1.52999 * 117.50264 * 145.01501 * 18 15 13 21 21 C 1.54264 * 110.03663 * 297.91179 * 20 18 15 22 22 C 1.54963 * 104.16267 * 217.13277 * 21 20 18 23 23 C 1.54893 * 102.77559 * 37.88906 * 22 21 20 24 24 C 1.53874 * 110.03460 * 180.69237 * 20 18 15 25 25 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 26 26 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 27 27 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 28 28 H 0.97000 * 119.99642 * 354.87764 * 7 6 4 29 29 H 0.97005 * 119.99732 * 95.00666 * 12 2 1 30 30 H 1.08995 * 117.50177 * 214.97984 * 17 15 13 31 31 H 1.09007 * 117.49628 * 359.97438 * 17 15 13 32 32 H 1.09004 * 110.01229 * 59.30207 * 20 18 15 33 33 H 1.09007 * 110.48235 * 335.78307 * 21 20 18 34 34 H 1.09004 * 110.48344 * 98.42268 * 21 20 18 35 35 H 1.08997 * 110.71848 * 279.57451 * 22 21 20 36 36 H 1.08998 * 110.92309 * 156.29415 * 22 21 20 37 37 H 1.08997 * 110.48391 * 203.40667 * 23 22 21 38 38 H 1.09000 * 110.48770 * 80.76087 * 23 22 21 39 39 H 1.08997 * 110.03561 * 238.57241 * 24 20 18 40 40 H 1.09000 * 110.02923 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9162 -0.9294 -3.5505 8 14 1.3111 1.6199 -2.6502 9 1 1.1181 1.9460 -4.0860 10 1 0.0452 1.8621 -1.9125 11 1 2.3839 2.4791 -2.0878 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1583 2.4118 15 6 2.6499 -0.7286 3.5874 16 1 2.3516 -1.7727 3.6824 17 6 4.0329 -0.3384 4.1128 18 6 2.7758 0.0899 4.8739 19 1 2.4945 1.1422 4.8305 20 6 2.4738 -0.6198 6.1953 21 6 1.0066 -1.0958 6.2163 22 6 0.5586 -0.8790 7.6838 23 6 1.2607 0.4484 8.0637 24 6 2.6356 0.3612 7.3696 25 1 -0.3634 0.6090 0.8277 26 1 -0.3633 0.4124 -0.9413 27 1 -0.3633 -1.0214 0.1135 28 1 2.2403 -1.8401 -3.4691 29 1 2.2491 -1.6318 1.1525 30 1 4.6442 -1.1257 4.5538 31 1 4.5792 0.4317 3.5683 32 1 3.1439 -1.4699 6.3238 33 1 0.4004 -0.4934 5.5395 34 1 0.9439 -2.1508 5.9493 35 1 0.9060 -1.6949 8.3176 36 1 -0.5245 -0.7755 7.7489 37 1 1.3828 0.5196 9.1445 38 1 0.6958 1.3005 7.6857 39 1 3.3836 -0.0130 8.0685 40 1 2.9288 1.3431 6.9981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593437674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:41 Heat of formation + Delta-G solvation = -43.490358 kcal Electronic energy + Delta-G solvation = -18493.622867 eV Core-core repulsion = 15693.715496 eV Total energy + Delta-G solvation = -2799.907371 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74766 -38.26742 -35.77756 -34.68710 -32.39552 -29.81726 -28.84082 -28.63851 -24.92612 -23.95472 -22.04023 -20.87242 -20.33480 -19.55108 -19.44115 -17.76327 -16.57477 -15.96887 -15.27885 -15.17328 -14.43042 -13.98492 -13.67162 -13.44600 -13.31119 -12.68352 -12.50827 -12.22326 -12.12694 -11.78695 -11.62777 -11.39135 -11.29689 -11.22942 -11.14241 -10.76722 -10.55983 -10.47409 -10.09384 -10.01947 -9.87832 -9.77120 -9.16024 -9.05553 -8.31058 -8.13911 -6.57835 -4.20854 3.06219 3.39309 3.45222 3.60194 3.83530 4.06164 4.42441 4.48032 4.56319 4.61233 4.95768 4.98902 5.11699 5.18249 5.31487 5.38917 5.45802 5.48833 5.53531 5.59345 5.64675 5.74305 5.78297 5.83152 5.96337 6.07387 6.13177 6.20213 6.26314 6.41078 6.43077 6.57796 6.69659 6.98404 7.31953 7.43301 7.68412 8.24262 8.52970 8.72393 9.03121 9.48093 10.82951 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.041164 B = 0.004327 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.039245 B = 6469.443446 C = 6545.612941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.241 3.759 3 H 0.040 0.960 4 C -0.617 4.617 5 H 0.061 0.939 6 C 0.038 3.962 7 N -0.898 5.898 8 Si 1.043 2.957 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.699 5.699 13 C 0.530 3.470 14 O -0.559 6.559 15 C -0.184 4.184 16 H 0.117 0.883 17 C -0.152 4.152 18 C -0.113 4.113 19 H 0.116 0.884 20 C -0.061 4.061 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.118 4.118 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.268 0.732 29 H 0.393 0.607 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -0.962 20.883 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.137 3.863 3 H 0.058 0.942 4 C -0.655 4.655 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.532 5.532 8 Si 0.870 3.130 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.207 1.207 12 N -0.346 5.346 13 C 0.315 3.685 14 O -0.439 6.439 15 C -0.205 4.205 16 H 0.135 0.865 17 C -0.190 4.190 18 C -0.132 4.132 19 H 0.134 0.866 20 C -0.080 4.080 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.155 4.155 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.226 0.774 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.002 1.015 19.747 19.773 hybrid contribution 0.639 -1.866 0.944 2.187 sum 0.636 -0.852 20.690 20.718 Atomic orbital electron populations 1.22493 0.98919 1.00073 1.00337 1.18999 0.90553 0.94153 0.82557 0.94248 1.22085 1.41729 1.10530 0.91162 0.92082 1.25691 0.94253 1.05125 0.91736 1.70883 1.41040 1.09853 1.31378 0.84072 0.77647 0.75095 0.76163 1.20874 1.19744 1.20655 1.46216 1.64813 1.13770 1.09758 1.19595 0.78028 0.86881 0.83959 1.90625 1.51840 1.16206 1.85227 1.22323 1.02786 1.00651 0.94751 0.86542 1.23049 0.89740 1.03357 1.02811 1.22495 1.00744 0.99953 0.89984 0.86557 1.21392 0.96925 0.97186 0.92475 1.22433 0.95622 1.01005 0.96655 1.22505 0.99927 0.97395 0.96487 1.22372 0.96265 0.97975 0.99707 1.22186 0.97183 0.99692 0.96466 0.95211 0.91954 0.93769 0.92137 0.77396 0.88262 0.88378 0.91041 0.90963 0.91817 0.91791 0.91739 0.91998 0.91575 0.91969 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.16 37.16 0.34 -3.38 16 2 C 0.24 5.96 2.14 -69.08 -0.15 5.81 16 3 H 0.04 1.06 6.23 -51.93 -0.32 0.74 16 4 C -0.62 -17.01 9.00 -34.44 -0.31 -17.32 16 5 H 0.06 1.75 7.96 -52.48 -0.42 1.33 16 6 C 0.04 1.09 5.29 -17.82 -0.09 1.00 16 7 N -0.90 -27.00 13.70 55.43 0.76 -26.24 16 8 Si 1.04 25.49 26.29 -169.99 -4.47 21.02 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -6.23 5.76 56.52 0.33 -5.90 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.70 -14.67 5.07 -54.94 -0.28 -14.95 16 13 C 0.53 10.50 7.58 -10.99 -0.08 10.42 16 14 O -0.56 -13.04 15.92 5.56 0.09 -12.95 16 15 C -0.18 -2.68 5.62 -91.78 -0.52 -3.19 16 16 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.15 -1.92 9.89 -26.70 -0.26 -2.18 16 18 C -0.11 -1.46 4.37 -90.59 -0.40 -1.85 16 19 H 0.12 1.73 7.44 -51.92 -0.39 1.35 16 20 C -0.06 -0.63 3.09 -89.50 -0.28 -0.90 16 21 C -0.12 -1.23 6.11 -25.03 -0.15 -1.39 16 22 C -0.13 -1.10 6.91 -24.70 -0.17 -1.27 16 23 C -0.13 -1.10 6.83 -25.07 -0.17 -1.27 16 24 C -0.12 -1.09 6.46 -25.61 -0.17 -1.25 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.48 4.88 -51.93 -0.25 1.23 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.27 7.98 8.73 -40.82 -0.36 7.62 16 29 H 0.39 7.38 8.53 -40.82 -0.35 7.03 16 30 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 33 H 0.07 0.87 7.86 -51.92 -0.41 0.47 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -31.10 319.96 -8.30 -39.40 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.81 Total: 5.68 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.41 Total: -16.78 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.48 Total: -41.19 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.47 Total: 21.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.10 -8.30 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.086 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds