Wall clock time and date at job start Mon Mar 30 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50696 * 109.47154 * 240.00347 * 2 1 3 5 5 H 1.08004 * 119.99910 * 245.62805 * 4 2 1 6 6 C 1.37873 * 120.00460 * 65.62816 * 4 2 1 7 7 N 1.31516 * 120.00242 * 197.51474 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 17.50622 * 6 4 2 9 9 H 1.48498 * 109.47073 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47358 * 300.00455 * 8 6 4 11 11 H 1.48503 * 109.46766 * 60.00289 * 8 6 4 12 12 N 1.46498 * 109.47021 * 119.99957 * 2 1 3 13 13 C 1.34773 * 120.00367 * 274.99968 * 12 2 1 14 14 O 1.21282 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00380 * 180.02562 * 13 12 2 16 16 H 1.09004 * 115.54882 * 325.58434 * 15 13 12 17 17 C 1.52995 * 117.50230 * 111.25189 * 15 13 12 18 18 C 1.52995 * 117.50372 * 179.91427 * 15 13 12 19 19 H 1.09009 * 117.49709 * 0.02562 * 18 15 13 20 20 C 1.52999 * 117.50264 * 145.01501 * 18 15 13 21 21 C 1.54264 * 110.03663 * 297.91179 * 20 18 15 22 22 C 1.54963 * 104.16267 * 217.13277 * 21 20 18 23 23 C 1.54893 * 102.77559 * 37.88906 * 22 21 20 24 24 C 1.53874 * 110.03460 * 180.69237 * 20 18 15 25 25 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 26 26 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 27 27 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 28 28 H 0.97000 * 119.99642 * 354.87764 * 7 6 4 29 29 H 0.97005 * 119.99732 * 95.00666 * 12 2 1 30 30 H 1.08995 * 117.50177 * 214.97984 * 17 15 13 31 31 H 1.09007 * 117.49628 * 359.97438 * 17 15 13 32 32 H 1.09004 * 110.01229 * 59.30207 * 20 18 15 33 33 H 1.09007 * 110.48235 * 335.78307 * 21 20 18 34 34 H 1.09004 * 110.48344 * 98.42268 * 21 20 18 35 35 H 1.08997 * 110.71848 * 279.57451 * 22 21 20 36 36 H 1.08998 * 110.92309 * 156.29415 * 22 21 20 37 37 H 1.08997 * 110.48391 * 203.40667 * 23 22 21 38 38 H 1.09000 * 110.48770 * 80.76087 * 23 22 21 39 39 H 1.08997 * 110.03561 * 238.57241 * 24 20 18 40 40 H 1.09000 * 110.02923 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9162 -0.9294 -3.5505 8 14 1.3111 1.6199 -2.6502 9 1 1.1181 1.9460 -4.0860 10 1 0.0452 1.8621 -1.9125 11 1 2.3839 2.4791 -2.0878 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1583 2.4118 15 6 2.6499 -0.7286 3.5874 16 1 2.3516 -1.7727 3.6824 17 6 4.0329 -0.3384 4.1128 18 6 2.7758 0.0899 4.8739 19 1 2.4945 1.1422 4.8305 20 6 2.4738 -0.6198 6.1953 21 6 1.0066 -1.0958 6.2163 22 6 0.5586 -0.8790 7.6838 23 6 1.2607 0.4484 8.0637 24 6 2.6356 0.3612 7.3696 25 1 -0.3634 0.6090 0.8277 26 1 -0.3633 0.4124 -0.9413 27 1 -0.3633 -1.0214 0.1135 28 1 2.2403 -1.8401 -3.4691 29 1 2.2491 -1.6318 1.1525 30 1 4.6442 -1.1257 4.5538 31 1 4.5792 0.4317 3.5683 32 1 3.1439 -1.4699 6.3238 33 1 0.4004 -0.4934 5.5395 34 1 0.9439 -2.1508 5.9493 35 1 0.9060 -1.6949 8.3176 36 1 -0.5245 -0.7755 7.7489 37 1 1.3828 0.5196 9.1445 38 1 0.6958 1.3005 7.6857 39 1 3.3836 -0.0130 8.0685 40 1 2.9288 1.3431 6.9981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593437674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:41 Heat of formation + Delta-G solvation = -62.506210 kcal Electronic energy + Delta-G solvation = -18494.447456 eV Core-core repulsion = 15693.715496 eV Total energy + Delta-G solvation = -2800.731960 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10099 -39.39793 -37.12446 -36.29384 -34.46937 -31.64823 -29.63238 -29.44917 -26.95417 -25.43145 -22.99300 -22.27155 -21.45874 -21.07875 -20.43606 -19.71171 -18.09597 -17.19596 -16.58935 -16.24668 -15.85725 -15.59872 -15.08662 -14.78635 -14.61515 -14.25975 -14.17700 -13.69082 -13.47991 -13.39337 -13.25299 -12.51495 -12.44118 -12.22780 -11.99324 -11.91937 -11.86663 -11.70205 -11.47188 -11.36998 -11.20142 -11.11792 -10.91719 -10.69682 -10.49497 -9.94048 -8.83668 -6.47857 1.42856 1.47904 1.59410 1.67974 2.37332 2.40383 2.87060 2.97879 3.60979 3.68120 3.77395 3.90172 4.03246 4.11557 4.25727 4.45552 4.52624 4.62031 4.63796 4.68913 4.74332 4.76218 4.81996 4.87921 4.88674 4.98599 5.04258 5.07514 5.11299 5.25664 5.34714 5.39049 5.40223 5.52118 5.57583 5.61717 5.62880 5.97454 6.49230 6.82632 7.25030 7.41707 8.56233 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.041164 B = 0.004327 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.039245 B = 6469.443446 C = 6545.612941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.243 3.757 3 H 0.020 0.980 4 C -0.615 4.615 5 H 0.041 0.959 6 C -0.004 4.004 7 N -0.925 5.925 8 Si 1.073 2.927 9 H -0.279 1.279 10 H -0.248 1.248 11 H -0.275 1.275 12 N -0.701 5.701 13 C 0.526 3.474 14 O -0.599 6.599 15 C -0.193 4.193 16 H 0.143 0.857 17 C -0.138 4.138 18 C -0.105 4.105 19 H 0.090 0.910 20 C -0.056 4.056 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.118 4.118 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.258 0.742 29 H 0.404 0.596 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.841 -1.464 23.228 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.138 3.862 3 H 0.038 0.962 4 C -0.653 4.653 5 H 0.059 0.941 6 C -0.205 4.205 7 N -0.560 5.560 8 Si 0.896 3.104 9 H -0.204 1.204 10 H -0.173 1.173 11 H -0.201 1.201 12 N -0.348 5.348 13 C 0.314 3.686 14 O -0.481 6.481 15 C -0.214 4.214 16 H 0.161 0.839 17 C -0.175 4.175 18 C -0.124 4.124 19 H 0.108 0.892 20 C -0.074 4.074 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.165 4.165 24 C -0.155 4.155 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.239 0.761 30 H 0.153 0.847 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.180 0.481 22.119 22.125 hybrid contribution 0.629 -1.731 0.250 1.859 sum 0.809 -1.250 22.369 22.418 Atomic orbital electron populations 1.22367 0.97592 1.00771 1.00320 1.18732 0.91492 0.92976 0.83028 0.96248 1.22241 1.40818 1.09711 0.92501 0.94103 1.26826 0.94102 1.07879 0.91722 1.70983 1.43091 1.09701 1.32249 0.83676 0.78683 0.71381 0.76701 1.20411 1.17309 1.20096 1.46092 1.65151 1.14278 1.09317 1.20435 0.76805 0.86517 0.84800 1.90600 1.53386 1.18165 1.85952 1.22270 1.04704 1.01566 0.92847 0.83920 1.23189 0.89101 1.03591 1.01609 1.22507 1.00620 0.98632 0.90615 0.89216 1.21426 0.97224 0.97721 0.91047 1.22438 0.95340 1.01016 0.97241 1.22506 1.00069 0.97824 0.95568 1.22391 0.95863 0.97593 1.00612 1.22202 0.97909 0.99019 0.96418 0.94489 0.92475 0.92878 0.93211 0.76129 0.84716 0.89933 0.89012 0.93503 0.90924 0.90244 0.91679 0.90437 0.92795 0.90165 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.94 9.16 71.98 0.66 -6.28 16 2 C 0.24 11.96 2.14 44.25 0.09 12.05 16 3 H 0.02 1.05 6.23 -2.39 -0.01 1.04 16 4 C -0.61 -34.15 9.00 25.60 0.23 -33.92 16 5 H 0.04 2.38 7.96 -2.91 -0.02 2.36 16 6 C 0.00 -0.25 5.29 84.65 0.45 0.20 16 7 N -0.93 -56.30 13.70 21.45 0.29 -56.01 16 8 Si 1.07 51.11 26.29 68.60 1.80 52.91 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.25 -10.85 5.76 99.48 0.57 -10.28 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.70 -29.11 5.07 -446.11 -2.26 -31.37 16 13 C 0.53 20.62 7.58 87.66 0.66 21.29 16 14 O -0.60 -28.16 15.92 -3.04 -0.05 -28.21 16 15 C -0.19 -5.28 5.62 -11.54 -0.06 -5.34 16 16 H 0.14 3.16 8.14 -2.38 -0.02 3.14 16 17 C -0.14 -3.14 9.89 30.62 0.30 -2.84 16 18 C -0.10 -2.54 4.37 -10.77 -0.05 -2.59 16 19 H 0.09 2.69 7.44 -2.38 -0.02 2.67 16 20 C -0.06 -0.99 3.09 -10.07 -0.03 -1.02 16 21 C -0.12 -2.27 6.11 31.69 0.19 -2.08 16 22 C -0.12 -1.85 6.91 31.91 0.22 -1.62 16 23 C -0.13 -1.95 6.83 31.67 0.22 -1.74 16 24 C -0.12 -1.89 6.46 31.32 0.20 -1.68 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.64 4.88 -2.39 -0.01 2.63 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16 29 H 0.40 14.87 8.53 -92.70 -0.79 14.08 16 30 H 0.13 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.09 1.32 7.94 -2.38 -0.02 1.30 16 33 H 0.05 1.10 7.86 -2.38 -0.02 1.08 16 34 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.05 7.53 -2.39 -0.02 1.03 16 Total: -1.00 -67.52 319.96 2.93 -64.59 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.05 Total: 23.66 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 3.09 Total: -25.58 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -1.97 Total: -87.38 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.80 Total: 52.91 kcal Total: -67.52 2.93 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.088 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds