Wall clock time and date at job start Mon Mar 30 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47362 * 2 1 4 4 C 1.50703 * 109.47406 * 240.00320 * 2 1 3 5 5 H 1.07997 * 120.00051 * 240.00510 * 4 2 1 6 6 C 1.37881 * 119.99806 * 59.99693 * 4 2 1 7 7 N 1.31510 * 120.00166 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99826 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47141 * 90.00119 * 8 6 4 10 10 H 1.48494 * 109.46887 * 210.00070 * 8 6 4 11 11 H 1.48497 * 109.46998 * 330.00382 * 8 6 4 12 12 N 1.46497 * 109.47363 * 120.00187 * 2 1 3 13 13 C 1.34772 * 120.00037 * 275.00402 * 12 2 1 14 14 O 1.21282 * 120.00011 * 359.97438 * 13 12 2 15 15 C 1.50710 * 120.00048 * 179.72145 * 13 12 2 16 16 H 1.08997 * 115.54465 * 309.66550 * 15 13 12 17 17 C 1.52998 * 117.49628 * 163.99151 * 15 13 12 18 18 C 1.52997 * 117.49555 * 95.33285 * 15 13 12 19 19 H 1.08997 * 117.49606 * 214.97683 * 18 15 13 20 20 C 1.52999 * 117.50478 * 359.97438 * 18 15 13 21 21 C 1.54267 * 110.03226 * 294.04255 * 20 18 15 22 22 C 1.54887 * 104.19526 * 217.10510 * 21 20 18 23 23 C 1.54890 * 102.75246 * 37.93857 * 22 21 20 24 24 C 1.53876 * 110.03628 * 176.87276 * 20 18 15 25 25 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46833 * 299.99773 * 1 2 3 27 27 H 1.08998 * 109.46973 * 59.99556 * 1 2 3 28 28 H 0.97002 * 119.99962 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99879 * 94.99714 * 12 2 1 30 30 H 1.08996 * 117.50495 * 0.02562 * 17 15 13 31 31 H 1.09004 * 117.49712 * 145.02335 * 17 15 13 32 32 H 1.09000 * 110.01376 * 55.47603 * 20 18 15 33 33 H 1.09005 * 110.48164 * 335.77795 * 21 20 18 34 34 H 1.08995 * 110.48899 * 98.42204 * 21 20 18 35 35 H 1.09001 * 110.75674 * 279.62213 * 22 21 20 36 36 H 1.08998 * 110.91469 * 156.32972 * 22 21 20 37 37 H 1.08991 * 110.48937 * 203.38624 * 23 22 21 38 38 H 1.09001 * 110.48398 * 80.73444 * 23 22 21 39 39 H 1.09003 * 110.03088 * 238.57126 * 24 20 18 40 40 H 1.08998 * 110.02728 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1122 11 1 3.6294 -1.7581 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6435 -0.7304 3.5891 16 1 2.1363 -1.6650 3.8283 17 6 3.1240 0.1321 4.7580 18 6 4.1374 -0.6360 3.9057 19 1 4.6129 -1.5085 4.3537 20 6 5.0131 0.1734 2.9471 21 6 5.0625 -0.5151 1.5675 22 6 6.5160 -0.2896 1.0823 23 6 7.3390 -0.4419 2.3856 24 6 6.4605 0.2200 3.4673 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.7095 1.1619 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 3.0807 1.2143 4.6361 31 1 2.9333 -0.2355 5.7663 32 1 4.6197 1.1849 2.8464 33 1 4.8539 -1.5806 1.6653 34 1 4.3549 -0.0482 0.8825 35 1 6.6335 0.7108 0.6660 36 1 6.8045 -1.0463 0.3527 37 1 8.2926 0.0785 2.2977 38 1 7.4980 -1.4955 2.6154 39 1 6.7699 1.2542 3.6182 40 1 6.5391 -0.3345 4.4024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593437676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:45 Heat of formation + Delta-G solvation = -40.119668 kcal Electronic energy + Delta-G solvation = -19312.045805 eV Core-core repulsion = 16512.284598 eV Total energy + Delta-G solvation = -2799.761207 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75139 -37.72282 -35.63348 -34.51623 -32.29593 -29.07007 -28.46003 -28.33695 -25.24393 -23.91215 -21.84692 -20.67813 -20.27639 -19.73867 -18.86035 -16.94824 -16.04658 -15.76095 -15.22238 -14.67418 -14.46533 -14.10598 -13.50943 -13.20455 -13.07652 -12.54055 -12.35665 -11.90080 -11.61701 -11.40284 -11.18915 -11.02231 -10.92499 -10.91234 -10.72085 -10.68671 -10.45435 -10.32610 -10.21974 -10.20119 -9.90121 -9.67744 -9.01213 -8.91629 -8.52300 -7.82143 -6.10248 -4.19085 3.24895 3.30045 3.32168 3.34151 3.97458 4.18928 4.39642 4.71487 4.82977 4.91060 5.12343 5.16709 5.22177 5.30371 5.56967 5.68029 5.69851 5.75999 5.82805 5.84945 5.96380 5.98673 6.06664 6.10299 6.26839 6.32944 6.44864 6.48342 6.67272 6.79779 6.86005 7.00407 7.18979 7.51528 7.61403 7.73258 7.94968 8.18024 8.74046 8.82719 9.21795 9.49083 10.95747 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.007267 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.194341 B = 3851.986099 C = 4888.381555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.047 0.953 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.704 5.704 13 C 0.535 3.465 14 O -0.557 6.557 15 C -0.187 4.187 16 H 0.117 0.883 17 C -0.151 4.151 18 C -0.119 4.119 19 H 0.107 0.893 20 C -0.067 4.067 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.818 -4.833 10.856 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.351 5.351 13 C 0.320 3.680 14 O -0.436 6.436 15 C -0.208 4.208 16 H 0.135 0.865 17 C -0.188 4.188 18 C -0.138 4.138 19 H 0.125 0.875 20 C -0.086 4.086 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.152 4.152 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.509 -3.853 10.705 14.207 hybrid contribution 0.226 -1.044 -0.860 1.371 sum 8.735 -4.897 9.845 14.042 Atomic orbital electron populations 1.22085 0.98689 0.99039 1.00826 1.18703 0.90869 0.93919 0.80096 0.93501 1.21210 1.32261 1.13103 0.90267 0.92073 1.24877 0.94863 0.94927 0.99003 1.69905 1.36007 1.22449 1.23792 0.86488 0.79195 0.79299 0.82370 1.20612 1.21123 1.19824 1.46468 1.64858 1.13505 1.10280 1.19404 0.77914 0.86845 0.83857 1.90638 1.51615 1.16217 1.85165 1.22413 0.98762 1.02331 0.97329 0.86479 1.23021 1.01913 0.99600 0.94268 1.22478 0.89127 1.01260 1.00901 0.87547 1.21431 0.94006 0.99101 0.94051 1.22498 0.97053 1.00565 0.95713 1.22471 0.95469 1.01590 0.96649 1.22371 0.98012 1.00233 0.95554 1.22164 0.94358 1.00488 0.98233 0.95542 0.96728 0.89227 0.92638 0.77973 0.87766 0.88686 0.90595 0.91813 0.89611 0.91713 0.91780 0.92268 0.92005 0.92136 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.27 6.73 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.70 -14.58 3.81 -54.93 -0.21 -14.79 16 13 C 0.54 10.77 5.46 -10.98 -0.06 10.71 16 14 O -0.56 -13.54 16.05 5.56 0.09 -13.45 16 15 C -0.19 -2.82 6.13 -91.77 -0.56 -3.39 16 16 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 17 C -0.15 -2.03 9.70 -26.69 -0.26 -2.29 16 18 C -0.12 -1.55 4.76 -90.58 -0.43 -1.98 16 19 H 0.11 1.16 8.00 -51.93 -0.42 0.75 16 20 C -0.07 -0.97 2.44 -89.50 -0.22 -1.19 16 21 C -0.12 -1.88 5.17 -25.07 -0.13 -2.01 16 22 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 23 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 24 C -0.11 -1.35 6.46 -25.61 -0.17 -1.52 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 7.11 8.54 -40.82 -0.35 6.76 16 30 H 0.10 1.60 7.72 -51.93 -0.40 1.20 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.30 7.88 -51.93 -0.41 0.89 16 33 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 34 H 0.09 1.67 6.72 -51.93 -0.35 1.32 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.65 7.58 -51.93 -0.39 0.26 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -29.50 319.00 -8.88 -38.38 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.78 Total: 8.21 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.40 Total: -14.46 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.42 Total: -39.10 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.50 -8.88 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.736 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds