Wall clock time and date at job start Mon Mar 30 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47362 * 2 1 4 4 C 1.50703 * 109.47406 * 240.00320 * 2 1 3 5 5 H 1.07997 * 120.00051 * 240.00510 * 4 2 1 6 6 C 1.37881 * 119.99806 * 59.99693 * 4 2 1 7 7 N 1.31510 * 120.00166 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99826 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47141 * 90.00119 * 8 6 4 10 10 H 1.48494 * 109.46887 * 210.00070 * 8 6 4 11 11 H 1.48497 * 109.46998 * 330.00382 * 8 6 4 12 12 N 1.46497 * 109.47363 * 120.00187 * 2 1 3 13 13 C 1.34772 * 120.00037 * 275.00402 * 12 2 1 14 14 O 1.21282 * 120.00011 * 359.97438 * 13 12 2 15 15 C 1.50710 * 120.00048 * 179.72145 * 13 12 2 16 16 H 1.08997 * 115.54465 * 309.66550 * 15 13 12 17 17 C 1.52998 * 117.49628 * 163.99151 * 15 13 12 18 18 C 1.52997 * 117.49555 * 95.33285 * 15 13 12 19 19 H 1.08997 * 117.49606 * 214.97683 * 18 15 13 20 20 C 1.52999 * 117.50478 * 359.97438 * 18 15 13 21 21 C 1.54267 * 110.03226 * 294.04255 * 20 18 15 22 22 C 1.54887 * 104.19526 * 217.10510 * 21 20 18 23 23 C 1.54890 * 102.75246 * 37.93857 * 22 21 20 24 24 C 1.53876 * 110.03628 * 176.87276 * 20 18 15 25 25 H 1.08996 * 109.47163 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46833 * 299.99773 * 1 2 3 27 27 H 1.08998 * 109.46973 * 59.99556 * 1 2 3 28 28 H 0.97002 * 119.99962 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99879 * 94.99714 * 12 2 1 30 30 H 1.08996 * 117.50495 * 0.02562 * 17 15 13 31 31 H 1.09004 * 117.49712 * 145.02335 * 17 15 13 32 32 H 1.09000 * 110.01376 * 55.47603 * 20 18 15 33 33 H 1.09005 * 110.48164 * 335.77795 * 21 20 18 34 34 H 1.08995 * 110.48899 * 98.42204 * 21 20 18 35 35 H 1.09001 * 110.75674 * 279.62213 * 22 21 20 36 36 H 1.08998 * 110.91469 * 156.32972 * 22 21 20 37 37 H 1.08991 * 110.48937 * 203.38624 * 23 22 21 38 38 H 1.09001 * 110.48398 * 80.73444 * 23 22 21 39 39 H 1.09003 * 110.03088 * 238.57126 * 24 20 18 40 40 H 1.08998 * 110.02728 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1122 11 1 3.6294 -1.7581 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6435 -0.7304 3.5891 16 1 2.1363 -1.6650 3.8283 17 6 3.1240 0.1321 4.7580 18 6 4.1374 -0.6360 3.9057 19 1 4.6129 -1.5085 4.3537 20 6 5.0131 0.1734 2.9471 21 6 5.0625 -0.5151 1.5675 22 6 6.5160 -0.2896 1.0823 23 6 7.3390 -0.4419 2.3856 24 6 6.4605 0.2200 3.4673 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.7095 1.1619 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 3.0807 1.2143 4.6361 31 1 2.9333 -0.2355 5.7663 32 1 4.6197 1.1849 2.8464 33 1 4.8539 -1.5806 1.6653 34 1 4.3549 -0.0482 0.8825 35 1 6.6335 0.7108 0.6660 36 1 6.8045 -1.0463 0.3527 37 1 8.2926 0.0785 2.2977 38 1 7.4980 -1.4955 2.6154 39 1 6.7699 1.2542 3.6182 40 1 6.5391 -0.3345 4.4024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593437676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:45 Heat of formation + Delta-G solvation = -57.147030 kcal Electronic energy + Delta-G solvation = -19312.784166 eV Core-core repulsion = 16512.284598 eV Total energy + Delta-G solvation = -2800.499569 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17515 -39.09141 -37.05566 -36.22785 -34.27093 -30.97593 -29.61001 -29.42390 -27.35366 -25.42591 -22.88819 -22.42704 -21.49228 -21.07860 -20.34721 -18.63980 -17.50084 -17.16604 -17.13335 -16.21881 -15.65554 -15.57611 -15.03674 -14.77082 -14.41102 -14.15355 -13.88061 -13.65623 -13.03068 -12.98140 -12.87664 -12.76006 -12.48624 -12.29722 -12.18501 -12.06165 -11.89604 -11.82847 -11.49022 -11.40244 -11.13378 -11.00217 -10.86886 -10.64156 -10.51548 -9.67375 -8.17445 -6.34289 1.43236 1.44056 1.54561 1.78984 2.34657 2.62238 2.89669 3.13301 3.61484 3.75022 3.80136 4.01162 4.06768 4.14906 4.39493 4.52407 4.62065 4.65891 4.73165 4.76484 4.85224 4.89605 4.90055 4.93773 5.03928 5.09441 5.13240 5.15959 5.26566 5.37855 5.42482 5.45141 5.52011 5.58646 5.63258 5.69904 5.92325 6.10469 6.73960 7.02630 7.33517 7.62116 8.89130 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.007267 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.194341 B = 3851.986099 C = 4888.381555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.275 3.725 3 H -0.008 1.008 4 C -0.539 4.539 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.697 5.697 13 C 0.531 3.469 14 O -0.609 6.609 15 C -0.200 4.200 16 H 0.151 0.849 17 C -0.144 4.144 18 C -0.099 4.099 19 H 0.149 0.851 20 C -0.070 4.070 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.109 4.109 25 H 0.041 0.959 26 H 0.008 0.992 27 H 0.066 0.934 28 H 0.264 0.736 29 H 0.403 0.597 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.698 -7.826 12.373 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.172 3.828 3 H 0.010 0.990 4 C -0.577 4.577 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.345 5.345 13 C 0.319 3.681 14 O -0.492 6.492 15 C -0.221 4.221 16 H 0.169 0.831 17 C -0.182 4.182 18 C -0.117 4.117 19 H 0.166 0.834 20 C -0.089 4.089 21 C -0.158 4.158 22 C -0.166 4.166 23 C -0.152 4.152 24 C -0.146 4.146 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.238 0.762 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.403 -6.884 12.245 17.480 hybrid contribution -0.373 -0.018 -1.333 1.384 sum 10.030 -6.902 10.912 16.350 Atomic orbital electron populations 1.21914 0.98670 0.99403 0.99356 1.18250 0.90764 0.91654 0.82168 0.98992 1.21497 1.32228 1.13322 0.90623 0.90880 1.25792 0.94944 0.95556 1.02315 1.70062 1.37260 1.24031 1.24490 0.85382 0.79079 0.78066 0.78070 1.19604 1.21363 1.18682 1.46183 1.64841 1.13998 1.09436 1.20324 0.76493 0.86338 0.84971 1.90610 1.53648 1.18794 1.86102 1.22397 1.00965 1.03508 0.95195 0.83133 1.23113 1.01463 0.98022 0.95573 1.22650 0.87523 1.01918 0.99604 0.83352 1.21402 0.96356 0.96964 0.94195 1.22417 0.97047 1.00800 0.95534 1.22493 0.94925 1.00791 0.98397 1.22342 0.97861 1.01626 0.93337 1.22142 0.92014 1.01082 0.99391 0.94014 0.97265 0.91575 0.92654 0.76239 0.90692 0.84798 0.94862 0.90453 0.94616 0.93475 0.91227 0.90899 0.90011 0.92348 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.05 9.26 71.98 0.67 -6.39 16 2 C 0.28 14.61 2.56 44.25 0.11 14.72 16 3 H -0.01 -0.50 7.58 -2.39 -0.02 -0.51 16 4 C -0.54 -28.75 8.73 25.60 0.22 -28.53 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 8 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 N -0.70 -29.58 3.81 -446.09 -1.70 -31.28 16 13 C 0.53 21.93 5.46 87.66 0.48 22.40 16 14 O -0.61 -31.46 16.05 -3.04 -0.05 -31.51 16 15 C -0.20 -5.64 6.13 -11.54 -0.07 -5.71 16 16 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 17 C -0.14 -3.57 9.70 30.62 0.30 -3.27 16 18 C -0.10 -2.26 4.76 -10.77 -0.05 -2.32 16 19 H 0.15 2.31 8.00 -2.39 -0.02 2.29 16 20 C -0.07 -1.97 2.44 -10.07 -0.02 -1.99 16 21 C -0.12 -3.73 5.17 31.67 0.16 -3.57 16 22 C -0.13 -3.44 6.91 31.88 0.22 -3.22 16 23 C -0.11 -2.25 6.83 31.67 0.22 -2.04 16 24 C -0.11 -2.26 6.46 31.32 0.20 -2.06 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.40 14.57 8.54 -92.71 -0.79 13.78 16 30 H 0.07 2.32 7.72 -2.39 -0.02 2.31 16 31 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.03 1.20 7.88 -2.39 -0.02 1.18 16 33 H 0.08 2.14 7.85 -2.38 -0.02 2.12 16 34 H 0.03 1.45 6.72 -2.39 -0.02 1.44 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.42 7.58 -2.39 -0.02 1.40 16 Total: -1.00 -69.02 319.00 3.62 -65.39 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.22 Total: 27.20 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 2.88 Total: -20.77 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.46 Total: -84.79 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.05 Total: -31.51 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -69.02 3.62 -65.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.244 kcal (2) G-P(sol) polarization free energy of solvation -69.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds