Wall clock time and date at job start Mon Mar 30 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.21282 * 119.99524 * 120.00349 * 12 2 1 14 14 N 1.34773 * 119.99914 * 300.00351 * 12 2 1 15 15 C 1.46506 * 119.99778 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47088 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47149 * 179.97438 * 16 15 14 18 18 C 1.29447 * 117.96643 * 94.73061 * 17 16 15 19 19 C 1.50060 * 124.07962 * 180.23495 * 18 17 16 20 20 C 1.53026 * 110.20104 * 343.32236 * 19 18 17 21 21 C 1.53397 * 108.43873 * 49.24729 * 20 19 18 22 22 C 1.50073 * 117.96272 * 274.99578 * 17 16 15 23 23 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96990 * 120.00366 * 359.97438 * 14 12 2 28 28 H 1.09005 * 109.46943 * 299.99908 * 15 14 12 29 29 H 1.09002 * 109.47064 * 59.99645 * 15 14 12 30 30 H 1.09005 * 109.47052 * 299.99716 * 16 15 14 31 31 H 1.09002 * 109.47560 * 59.99824 * 16 15 14 32 32 H 1.08001 * 117.95956 * 0.47335 * 18 17 16 33 33 H 1.09006 * 109.48708 * 223.00385 * 19 18 17 34 34 H 1.08997 * 109.17688 * 103.44993 * 19 18 17 35 35 H 1.08997 * 109.64071 * 289.56116 * 20 19 18 36 36 H 1.09005 * 109.63876 * 168.92954 * 20 19 18 37 37 H 1.08994 * 109.64134 * 172.87828 * 21 20 19 38 38 H 1.08994 * 109.64144 * 52.24444 * 21 20 19 39 39 H 1.08997 * 109.35618 * 283.05857 * 22 17 16 40 40 H 1.09003 * 109.35654 * 42.77714 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9401 3.6509 16 6 1.6848 -0.2193 4.9000 17 6 2.1871 -0.9297 6.1305 18 6 3.2749 -0.4947 6.6810 19 6 3.8987 -1.1004 7.9040 20 6 2.8877 -1.9946 8.6252 21 6 2.2515 -2.9364 7.5950 22 6 1.3982 -2.1011 6.6380 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.9028 -0.5285 -4.4375 27 1 1.1493 0.5389 2.5436 28 1 1.8325 -1.9680 3.6510 29 1 3.2855 -0.9397 3.6507 30 1 2.0474 0.8087 4.9000 31 1 0.5948 -0.2201 4.8999 32 1 3.7619 0.3596 6.2343 33 1 4.2241 -0.3071 8.5771 34 1 4.7617 -1.6967 7.6078 35 1 2.1151 -1.3778 9.0842 36 1 3.3970 -2.5796 9.3911 37 1 1.6225 -3.6659 8.1050 38 1 3.0335 -3.4496 7.0357 39 1 0.5137 -1.7408 7.1632 40 1 1.0908 -2.7217 5.7962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596663736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:47 Heat of formation + Delta-G solvation = -48.177894 kcal Electronic energy + Delta-G solvation = -18180.885300 eV Core-core repulsion = 15380.774662 eV Total energy + Delta-G solvation = -2800.110638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.26215 -38.60991 -35.06411 -33.78164 -32.52117 -31.14352 -30.93361 -28.14575 -25.10727 -24.09779 -23.28816 -22.15886 -21.28900 -19.38951 -17.68700 -16.73563 -16.03330 -15.97437 -15.19812 -15.06731 -14.53209 -14.39866 -14.02553 -13.87642 -13.18783 -13.11957 -12.74100 -12.64521 -12.43186 -12.30058 -12.19410 -11.78231 -11.57085 -11.24969 -11.01339 -10.90740 -10.64571 -10.55232 -10.39708 -10.25014 -9.61582 -9.07064 -8.93602 -8.63779 -8.55643 -8.48116 -6.02576 -4.02544 2.08013 3.24909 3.32367 3.37950 3.63899 3.83921 4.39990 4.48019 4.54993 4.69312 4.95326 5.08767 5.12445 5.20846 5.24281 5.27361 5.37796 5.40071 5.57599 5.63518 5.70119 5.75646 5.80564 5.84786 5.96727 6.05840 6.10357 6.13449 6.17565 6.36350 6.47767 6.51458 6.75272 6.88595 7.01544 7.19273 7.57993 8.17343 8.58939 9.13211 9.19721 9.56637 11.10535 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.050158 B = 0.003765 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.105805 B = 7435.736098 C = 7578.588826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 H 0.051 0.949 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.267 1.267 11 H -0.296 1.296 12 C 0.526 3.474 13 O -0.532 6.532 14 N -0.749 5.749 15 C 0.127 3.873 16 C -0.099 4.099 17 C -0.114 4.114 18 C -0.157 4.157 19 C -0.089 4.089 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.085 4.085 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.394 0.606 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 2.452 23.667 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.543 4.543 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.223 1.223 12 C 0.315 3.685 13 O -0.406 6.406 14 N -0.404 5.404 15 C 0.003 3.997 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.175 4.175 19 C -0.126 4.126 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.122 4.122 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.227 0.773 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.972 1.703 23.356 23.501 hybrid contribution -0.891 1.285 -0.250 1.583 sum -2.863 2.988 23.106 23.474 Atomic orbital electron populations 1.22107 0.97371 1.01472 0.99170 1.19312 0.93178 0.97527 0.92687 0.93085 1.20962 1.32015 1.14088 0.87276 0.88901 1.24993 0.95866 0.96593 0.95757 1.69888 1.45550 1.40220 0.97850 0.86899 0.80681 0.83830 0.77032 1.20538 1.19267 1.22340 1.21263 0.78948 0.84322 0.83986 1.90581 1.37178 1.26326 1.86546 1.46266 1.55655 1.32707 1.05784 1.21141 0.99076 0.96272 0.83224 1.20957 1.01345 0.99084 0.92278 1.20685 0.96853 0.97552 0.96383 1.21938 0.96801 1.00886 0.97870 1.20421 0.98254 0.98768 0.95162 1.21605 0.98620 0.97885 0.97661 1.21611 0.99489 0.97629 0.97131 1.20415 0.97776 0.94867 0.99107 0.93330 0.92396 0.94859 0.92594 0.77256 0.92064 0.92084 0.90923 0.90809 0.87859 0.91295 0.90966 0.91882 0.91891 0.91739 0.91564 0.90990 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 3 H 0.05 1.18 7.20 -51.93 -0.37 0.80 16 4 C -0.51 -14.89 8.96 -34.44 -0.31 -15.19 16 5 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 8 Si 0.89 21.54 24.37 -169.99 -4.14 17.39 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 11 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 12 C 0.53 11.82 7.15 -10.98 -0.08 11.74 16 13 O -0.53 -14.19 15.46 5.56 0.09 -14.10 16 14 N -0.75 -12.44 5.45 -60.29 -0.33 -12.77 16 15 C 0.13 1.84 5.66 -4.04 -0.02 1.81 16 16 C -0.10 -1.05 5.33 -27.89 -0.15 -1.20 16 17 C -0.11 -1.16 5.09 -100.94 -0.51 -1.67 16 18 C -0.16 -1.53 9.37 -35.90 -0.34 -1.87 16 19 C -0.09 -0.73 6.11 -28.18 -0.17 -0.90 16 20 C -0.12 -0.91 6.01 -26.51 -0.16 -1.07 16 21 C -0.12 -1.00 6.01 -26.51 -0.16 -1.16 16 22 C -0.08 -0.77 5.80 -28.18 -0.16 -0.94 16 23 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.03 0.54 7.56 -51.93 -0.39 0.15 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.39 5.36 7.89 -40.82 -0.32 5.03 16 28 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.72 7.80 -51.93 -0.41 0.31 16 31 H 0.07 0.72 8.11 -51.93 -0.42 0.29 16 32 H 0.10 0.99 7.74 -52.49 -0.41 0.59 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -33.64 315.84 -7.59 -41.22 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.69 Total: 2.30 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.05 Total: -11.51 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.45 Total: -40.07 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.64 -7.59 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596663736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.956 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds