Wall clock time and date at job start Mon Mar 30 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.21282 * 119.99524 * 120.00349 * 12 2 1 14 14 N 1.34773 * 119.99914 * 300.00351 * 12 2 1 15 15 C 1.46506 * 119.99778 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47088 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47149 * 179.97438 * 16 15 14 18 18 C 1.29447 * 117.96643 * 94.73061 * 17 16 15 19 19 C 1.50060 * 124.07962 * 180.23495 * 18 17 16 20 20 C 1.53026 * 110.20104 * 343.32236 * 19 18 17 21 21 C 1.53397 * 108.43873 * 49.24729 * 20 19 18 22 22 C 1.50073 * 117.96272 * 274.99578 * 17 16 15 23 23 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96990 * 120.00366 * 359.97438 * 14 12 2 28 28 H 1.09005 * 109.46943 * 299.99908 * 15 14 12 29 29 H 1.09002 * 109.47064 * 59.99645 * 15 14 12 30 30 H 1.09005 * 109.47052 * 299.99716 * 16 15 14 31 31 H 1.09002 * 109.47560 * 59.99824 * 16 15 14 32 32 H 1.08001 * 117.95956 * 0.47335 * 18 17 16 33 33 H 1.09006 * 109.48708 * 223.00385 * 19 18 17 34 34 H 1.08997 * 109.17688 * 103.44993 * 19 18 17 35 35 H 1.08997 * 109.64071 * 289.56116 * 20 19 18 36 36 H 1.09005 * 109.63876 * 168.92954 * 20 19 18 37 37 H 1.08994 * 109.64134 * 172.87828 * 21 20 19 38 38 H 1.08994 * 109.64144 * 52.24444 * 21 20 19 39 39 H 1.08997 * 109.35618 * 283.05857 * 22 17 16 40 40 H 1.09003 * 109.35654 * 42.77714 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9401 3.6509 16 6 1.6848 -0.2193 4.9000 17 6 2.1871 -0.9297 6.1305 18 6 3.2749 -0.4947 6.6810 19 6 3.8987 -1.1004 7.9040 20 6 2.8877 -1.9946 8.6252 21 6 2.2515 -2.9364 7.5950 22 6 1.3982 -2.1011 6.6380 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.9028 -0.5285 -4.4375 27 1 1.1493 0.5389 2.5436 28 1 1.8325 -1.9680 3.6510 29 1 3.2855 -0.9397 3.6507 30 1 2.0474 0.8087 4.9000 31 1 0.5948 -0.2201 4.8999 32 1 3.7619 0.3596 6.2343 33 1 4.2241 -0.3071 8.5771 34 1 4.7617 -1.6967 7.6078 35 1 2.1151 -1.3778 9.0842 36 1 3.3970 -2.5796 9.3911 37 1 1.6225 -3.6659 8.1050 38 1 3.0335 -3.4496 7.0357 39 1 0.5137 -1.7408 7.1632 40 1 1.0908 -2.7217 5.7962 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596663736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:47 Heat of formation + Delta-G solvation = -71.305658 kcal Electronic energy + Delta-G solvation = -18181.888195 eV Core-core repulsion = 15380.774662 eV Total energy + Delta-G solvation = -2801.113533 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72447 -39.61702 -36.35579 -35.78729 -33.82876 -32.97608 -31.61951 -29.21958 -27.10710 -25.34785 -24.15522 -23.52324 -22.14726 -21.07147 -18.81510 -18.41285 -17.78024 -17.19075 -16.52447 -16.41894 -15.99839 -15.40829 -15.22107 -14.95759 -14.66470 -14.49803 -14.10469 -13.87386 -13.52018 -13.40467 -13.36857 -12.94248 -12.80570 -12.72263 -12.51162 -12.19352 -12.09800 -11.64459 -11.46109 -11.30052 -11.22070 -11.06865 -10.77475 -10.46912 -10.01466 -9.64541 -8.27030 -6.35284 1.29865 1.33920 1.40939 1.52324 1.85970 2.34900 2.41558 3.06591 3.76798 3.82364 4.05063 4.08211 4.15969 4.20785 4.38697 4.43351 4.43988 4.50928 4.60912 4.64219 4.71064 4.75731 4.79643 4.92151 4.99578 5.03199 5.06544 5.11807 5.15421 5.20917 5.35107 5.45838 5.47833 5.53368 5.56467 5.78826 6.13428 6.26912 6.68963 6.86158 7.26328 7.50773 8.91002 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.050158 B = 0.003765 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.105805 B = 7435.736098 C = 7578.588826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 H 0.071 0.929 4 C -0.525 4.525 5 H 0.026 0.974 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.963 3.037 9 H -0.259 1.259 10 H -0.229 1.229 11 H -0.300 1.300 12 C 0.524 3.476 13 O -0.589 6.589 14 N -0.722 5.722 15 C 0.128 3.872 16 C -0.086 4.086 17 C -0.127 4.127 18 C -0.159 4.159 19 C -0.092 4.092 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.086 4.086 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.267 0.733 27 H 0.415 0.585 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 5.218 26.179 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.088 0.912 4 C -0.563 4.563 5 H 0.045 0.955 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.788 3.212 9 H -0.185 1.185 10 H -0.152 1.152 11 H -0.228 1.228 12 C 0.312 3.688 13 O -0.468 6.468 14 N -0.376 5.376 15 C 0.004 3.996 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.177 4.177 19 C -0.129 4.129 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.123 4.123 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.252 0.748 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.167 4.503 25.944 26.659 hybrid contribution -0.100 0.321 -0.987 1.043 sum -4.267 4.824 24.956 25.774 Atomic orbital electron populations 1.22013 0.94260 1.01627 1.01695 1.19272 0.95568 0.97459 0.90742 0.91164 1.21133 1.31714 1.12863 0.90570 0.95515 1.26091 0.97502 1.00896 0.94717 1.70090 1.47704 1.42909 0.98757 0.85655 0.78693 0.78807 0.78077 1.18509 1.15159 1.22786 1.21131 0.78499 0.83631 0.85526 1.90569 1.39886 1.28878 1.87481 1.45939 1.54393 1.32705 1.04550 1.21242 0.98182 0.96212 0.83933 1.20869 1.02262 0.99108 0.90091 1.20766 0.97439 0.98158 0.96440 1.22157 0.96436 1.00788 0.98300 1.20485 0.98276 0.99253 0.94911 1.21601 0.98590 0.97737 0.97554 1.21628 0.99284 0.97926 0.97196 1.20442 0.98282 0.94522 0.99058 0.93545 0.93656 0.89337 0.92383 0.74814 0.93337 0.93765 0.89585 0.89142 0.87860 0.89999 0.91220 0.91363 0.90755 0.90601 0.92878 0.89728 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 8.57 71.98 0.62 -4.65 16 2 C -0.01 -0.41 2.23 -12.28 -0.03 -0.43 16 3 H 0.07 3.00 7.20 -2.38 -0.02 2.99 16 4 C -0.52 -32.03 8.96 25.60 0.23 -31.80 16 5 H 0.03 1.93 7.00 -2.91 -0.02 1.91 16 6 C 0.00 0.24 5.45 84.66 0.46 0.70 16 7 N -0.95 -62.19 13.96 21.45 0.30 -61.89 16 8 Si 0.96 43.30 24.37 68.60 1.67 44.97 16 9 H -0.26 -10.85 6.87 99.48 0.68 -10.17 16 10 H -0.23 -8.81 6.53 99.48 0.65 -8.16 16 11 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 12 C 0.52 23.45 7.15 87.66 0.63 24.07 16 13 O -0.59 -32.90 15.46 -3.03 -0.05 -32.95 16 14 N -0.72 -22.42 5.45 -463.05 -2.52 -24.94 16 15 C 0.13 3.56 5.66 86.38 0.49 4.05 16 16 C -0.09 -1.58 5.33 29.84 0.16 -1.42 16 17 C -0.13 -2.33 5.09 -15.10 -0.08 -2.41 16 18 C -0.16 -2.81 9.37 27.03 0.25 -2.56 16 19 C -0.09 -1.35 6.11 29.66 0.18 -1.17 16 20 C -0.12 -1.53 6.01 30.74 0.18 -1.34 16 21 C -0.12 -1.85 6.01 30.73 0.18 -1.67 16 22 C -0.09 -1.43 5.80 29.66 0.17 -1.26 16 23 H 0.05 1.79 3.27 -2.39 -0.01 1.78 16 24 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 2.38 7.56 -2.39 -0.02 2.36 16 26 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 27 H 0.41 9.48 7.89 -92.72 -0.73 8.75 16 28 H 0.05 1.50 8.11 -2.38 -0.02 1.48 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.39 7.80 -2.38 -0.02 1.37 16 31 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 32 H 0.10 1.80 7.74 -2.91 -0.02 1.77 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 Total: -1.00 -78.93 315.84 3.06 -75.88 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.20 Total: 18.81 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.45 Total: -19.88 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.22 Total: -86.83 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.67 Total: 44.97 kcal Total: -78.93 3.06 -75.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596663736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.573 kcal (2) G-P(sol) polarization free energy of solvation -78.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds