Wall clock time and date at job start Mon Mar 30 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47552 * 2 1 4 4 C 1.50705 * 109.46978 * 240.00091 * 2 1 3 5 5 H 1.08005 * 119.99701 * 240.00228 * 4 2 1 6 6 C 1.37873 * 119.99906 * 60.00206 * 4 2 1 7 7 N 1.31517 * 120.00123 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99878 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47086 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47119 * 120.00194 * 8 6 4 11 11 H 1.48501 * 109.47363 * 240.00251 * 8 6 4 12 12 C 1.50703 * 109.46809 * 120.00415 * 2 1 3 13 13 O 1.21283 * 119.99891 * 112.35437 * 12 2 1 14 14 N 1.34778 * 120.00042 * 292.35155 * 12 2 1 15 15 C 1.46499 * 119.99626 * 357.72948 * 14 12 2 16 16 H 1.09003 * 109.47357 * 6.36590 * 15 14 12 17 17 C 1.53007 * 109.46755 * 246.37213 * 15 14 12 18 18 C 1.52998 * 109.47398 * 126.37419 * 15 14 12 19 19 C 1.52998 * 117.49718 * 243.23164 * 18 15 14 20 20 C 1.53001 * 117.49972 * 174.57272 * 18 15 14 21 21 C 1.46496 * 120.00175 * 177.72637 * 14 12 2 22 22 C 1.52996 * 117.49971 * 16.48489 * 21 14 12 23 23 C 1.52995 * 60.00150 * 252.51310 * 22 21 14 24 24 H 1.09000 * 109.46856 * 64.64193 * 1 2 3 25 25 H 1.08994 * 109.47549 * 184.64311 * 1 2 3 26 26 H 1.08994 * 109.46932 * 304.64837 * 1 2 3 27 27 H 0.96998 * 119.99683 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46940 * 180.02562 * 17 15 14 29 29 H 1.08997 * 109.47032 * 59.99772 * 17 15 14 30 30 H 1.09003 * 109.46680 * 299.99791 * 17 15 14 31 31 H 1.08996 * 115.55045 * 28.90391 * 18 15 14 32 32 H 1.09001 * 117.50210 * 0.02562 * 19 18 15 33 33 H 1.09007 * 117.49506 * 145.01550 * 19 18 15 34 34 H 1.08999 * 117.49623 * 214.97519 * 20 18 15 35 35 H 1.08998 * 117.49880 * 359.97438 * 20 18 15 36 36 H 1.08999 * 115.55051 * 162.20042 * 21 14 12 37 37 H 1.09002 * 117.49964 * 0.02562 * 22 21 14 38 38 H 1.08999 * 117.49829 * 145.01857 * 22 21 14 39 39 H 1.09001 * 117.50098 * 252.50598 * 23 22 21 40 40 H 1.09004 * 117.51608 * 107.48587 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2864 -3.6038 10 1 1.1677 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 6 2.0323 -0.7105 1.2305 13 8 2.6110 -1.7711 1.1245 14 7 1.8384 -0.1674 2.4486 15 6 1.1836 1.1372 2.5731 16 1 0.8260 1.4591 1.5950 17 6 2.1849 2.1610 3.1121 18 6 0.0008 1.0245 3.5369 19 6 -1.3970 1.2882 2.9736 20 6 -0.7392 2.3132 3.9009 21 6 2.2823 -0.8816 3.6482 22 6 3.2828 -2.0237 3.4607 23 6 1.8270 -2.3327 3.8154 24 1 -0.3633 0.4401 -0.9287 25 1 -0.3634 -1.0242 0.0832 26 1 -0.3633 0.5842 0.8454 27 1 0.7096 1.1619 -3.4844 28 1 1.6977 3.1315 3.2051 29 1 3.0276 2.2413 2.4254 30 1 2.5426 1.8391 4.0902 31 1 0.0961 0.2631 4.3110 32 1 -1.4741 1.5417 1.9163 33 1 -2.2215 0.7004 3.3774 34 1 -1.1312 2.3993 4.9144 35 1 -0.3832 3.2414 3.4541 36 1 2.3729 -0.2756 4.5496 37 1 3.6112 -2.2435 2.4448 38 1 4.0322 -2.1691 4.2387 39 1 1.6185 -2.6815 4.8268 40 1 1.1970 -2.7559 3.0330 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596781379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:49 Heat of formation + Delta-G solvation = 28.666912 kcal Electronic energy + Delta-G solvation = -19751.957561 eV Core-core repulsion = 16955.179164 eV Total energy + Delta-G solvation = -2796.778397 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96414 -37.54462 -35.88654 -34.07150 -33.23151 -30.40042 -29.29637 -25.25910 -24.17760 -23.34243 -22.20563 -21.91227 -21.33331 -19.93567 -18.11037 -16.77591 -16.29110 -15.21008 -14.87133 -14.74496 -14.45143 -14.07382 -13.42859 -13.27403 -13.11873 -12.76565 -12.41764 -12.12029 -11.77717 -11.54722 -11.18032 -11.06010 -10.96684 -10.88780 -10.68114 -10.50532 -10.32277 -10.20648 -10.12576 -9.94031 -9.92030 -9.77826 -8.93054 -8.44982 -8.05823 -7.79393 -6.02433 -4.05345 3.32509 3.40012 3.45139 3.51681 3.62501 3.98240 4.39046 4.47346 4.76151 5.06708 5.12004 5.24378 5.27842 5.31275 5.42694 5.49574 5.55969 5.64040 5.72074 5.81639 5.95688 6.02761 6.04641 6.11854 6.20114 6.25143 6.35652 6.46919 6.48913 6.67019 6.83054 6.91032 6.98947 7.37919 7.46941 7.77725 8.00791 8.14045 8.40817 9.03320 9.27334 9.60054 11.04904 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.007892 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.854655 B = 3546.901855 C = 4377.378676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.030 3.970 3 H 0.048 0.952 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.524 3.476 13 O -0.536 6.536 14 N -0.589 5.589 15 C 0.159 3.841 16 H 0.114 0.886 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.178 4.178 20 C -0.178 4.178 21 C 0.076 3.924 22 C -0.201 4.201 23 C -0.195 4.195 24 H 0.094 0.906 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.149 0.851 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 3.363 13.160 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.066 0.934 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.317 3.683 13 O -0.413 6.413 14 N -0.321 5.321 15 C 0.056 3.944 16 H 0.132 0.868 17 C -0.217 4.217 18 C -0.177 4.177 19 C -0.215 4.215 20 C -0.216 4.216 21 C -0.029 4.029 22 C -0.238 4.238 23 C -0.233 4.233 24 H 0.113 0.887 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.166 0.834 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.002 2.909 12.928 13.402 hybrid contribution 0.151 -0.395 -0.590 0.726 sum -1.851 2.514 12.338 12.727 Atomic orbital electron populations 1.21997 0.96418 0.99441 1.02244 1.18872 0.94236 0.96611 0.89337 0.93420 1.21192 1.30766 1.12680 0.89003 0.90803 1.24935 0.95161 0.95085 0.99061 1.69871 1.37238 1.23110 1.23377 0.86426 0.78636 0.79800 0.82569 1.19582 1.21071 1.21078 1.22044 0.76878 0.85276 0.84124 1.90286 1.41731 1.23469 1.85784 1.47614 1.59763 1.19686 1.05047 1.20888 0.90527 0.82897 1.00118 0.86790 1.22161 0.99637 0.98615 1.01322 1.22642 0.93202 0.99811 1.02043 1.23131 0.95650 1.02682 1.00030 1.22951 1.04551 0.93824 1.00247 1.21381 1.03715 0.87877 0.89954 1.24094 0.92040 1.01346 1.06350 1.23178 0.99147 0.99472 1.01544 0.88747 0.95281 0.95356 0.93053 0.91721 0.92029 0.92749 0.87733 0.87811 0.89165 0.89179 0.88622 0.86714 0.83390 0.90460 0.89614 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.62 37.16 0.32 -2.98 16 2 C 0.03 0.75 1.78 -92.92 -0.17 0.59 16 3 H 0.05 1.22 7.40 -51.93 -0.38 0.84 16 4 C -0.50 -14.09 8.37 -34.44 -0.29 -14.38 16 5 H 0.07 2.21 6.78 -52.48 -0.36 1.86 16 6 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 7 N -0.90 -24.95 11.30 55.43 0.63 -24.33 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.52 12.03 6.75 -10.98 -0.07 11.95 16 13 O -0.54 -13.58 11.36 5.55 0.06 -13.52 16 14 N -0.59 -10.76 2.73 -158.59 -0.43 -11.20 16 15 C 0.16 2.48 2.12 -67.93 -0.14 2.33 16 16 H 0.11 2.00 3.97 -51.93 -0.21 1.80 16 17 C -0.16 -2.11 9.06 37.16 0.34 -1.78 16 18 C -0.16 -2.08 5.24 -90.62 -0.47 -2.56 16 19 C -0.18 -2.26 9.52 -26.69 -0.25 -2.52 16 20 C -0.18 -1.95 9.70 -26.69 -0.26 -2.21 16 21 C 0.08 1.22 5.08 -67.94 -0.35 0.88 16 22 C -0.20 -3.42 9.63 -26.74 -0.26 -3.68 16 23 C -0.19 -3.13 9.90 -26.73 -0.26 -3.40 16 24 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.54 3.06 -51.93 -0.16 0.39 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.06 0.73 6.97 -51.93 -0.36 0.37 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.66 7.28 -51.93 -0.38 0.28 16 31 H 0.10 1.38 7.19 -51.93 -0.37 1.01 16 32 H 0.10 1.44 6.41 -51.93 -0.33 1.11 16 33 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.00 7.26 -51.93 -0.38 0.62 16 36 H 0.12 1.54 7.37 -51.93 -0.38 1.16 16 37 H 0.15 3.09 4.96 -53.39 -0.26 2.83 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.75 7.83 -51.93 -0.41 1.35 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -29.46 306.91 -8.07 -37.53 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.96 Total: 6.31 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.96 Total: -16.24 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.19 Total: -35.52 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.06 Total: -13.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.46 -8.07 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596781379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.197 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds