Wall clock time and date at job start Mon Mar 30 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47552 * 2 1 4 4 C 1.50705 * 109.46978 * 240.00091 * 2 1 3 5 5 H 1.08005 * 119.99701 * 240.00228 * 4 2 1 6 6 C 1.37873 * 119.99906 * 60.00206 * 4 2 1 7 7 N 1.31517 * 120.00123 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99878 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47086 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47119 * 120.00194 * 8 6 4 11 11 H 1.48501 * 109.47363 * 240.00251 * 8 6 4 12 12 C 1.50703 * 109.46809 * 120.00415 * 2 1 3 13 13 O 1.21283 * 119.99891 * 112.35437 * 12 2 1 14 14 N 1.34778 * 120.00042 * 292.35155 * 12 2 1 15 15 C 1.46499 * 119.99626 * 357.72948 * 14 12 2 16 16 H 1.09003 * 109.47357 * 6.36590 * 15 14 12 17 17 C 1.53007 * 109.46755 * 246.37213 * 15 14 12 18 18 C 1.52998 * 109.47398 * 126.37419 * 15 14 12 19 19 C 1.52998 * 117.49718 * 243.23164 * 18 15 14 20 20 C 1.53001 * 117.49972 * 174.57272 * 18 15 14 21 21 C 1.46496 * 120.00175 * 177.72637 * 14 12 2 22 22 C 1.52996 * 117.49971 * 16.48489 * 21 14 12 23 23 C 1.52995 * 60.00150 * 252.51310 * 22 21 14 24 24 H 1.09000 * 109.46856 * 64.64193 * 1 2 3 25 25 H 1.08994 * 109.47549 * 184.64311 * 1 2 3 26 26 H 1.08994 * 109.46932 * 304.64837 * 1 2 3 27 27 H 0.96998 * 119.99683 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46940 * 180.02562 * 17 15 14 29 29 H 1.08997 * 109.47032 * 59.99772 * 17 15 14 30 30 H 1.09003 * 109.46680 * 299.99791 * 17 15 14 31 31 H 1.08996 * 115.55045 * 28.90391 * 18 15 14 32 32 H 1.09001 * 117.50210 * 0.02562 * 19 18 15 33 33 H 1.09007 * 117.49506 * 145.01550 * 19 18 15 34 34 H 1.08999 * 117.49623 * 214.97519 * 20 18 15 35 35 H 1.08998 * 117.49880 * 359.97438 * 20 18 15 36 36 H 1.08999 * 115.55051 * 162.20042 * 21 14 12 37 37 H 1.09002 * 117.49964 * 0.02562 * 22 21 14 38 38 H 1.08999 * 117.49829 * 145.01857 * 22 21 14 39 39 H 1.09001 * 117.50098 * 252.50598 * 23 22 21 40 40 H 1.09004 * 117.51608 * 107.48587 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2864 -3.6038 10 1 1.1677 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 6 2.0323 -0.7105 1.2305 13 8 2.6110 -1.7711 1.1245 14 7 1.8384 -0.1674 2.4486 15 6 1.1836 1.1372 2.5731 16 1 0.8260 1.4591 1.5950 17 6 2.1849 2.1610 3.1121 18 6 0.0008 1.0245 3.5369 19 6 -1.3970 1.2882 2.9736 20 6 -0.7392 2.3132 3.9009 21 6 2.2823 -0.8816 3.6482 22 6 3.2828 -2.0237 3.4607 23 6 1.8270 -2.3327 3.8154 24 1 -0.3633 0.4401 -0.9287 25 1 -0.3634 -1.0242 0.0832 26 1 -0.3633 0.5842 0.8454 27 1 0.7096 1.1619 -3.4844 28 1 1.6977 3.1315 3.2051 29 1 3.0276 2.2413 2.4254 30 1 2.5426 1.8391 4.0902 31 1 0.0961 0.2631 4.3110 32 1 -1.4741 1.5417 1.9163 33 1 -2.2215 0.7004 3.3774 34 1 -1.1312 2.3993 4.9144 35 1 -0.3832 3.2414 3.4541 36 1 2.3729 -0.2756 4.5496 37 1 3.6112 -2.2435 2.4448 38 1 4.0322 -2.1691 4.2387 39 1 1.6185 -2.6815 4.8268 40 1 1.1970 -2.7559 3.0330 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596781379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:48 Heat of formation + Delta-G solvation = 12.452915 kcal Electronic energy + Delta-G solvation = -19752.660653 eV Core-core repulsion = 16955.179164 eV Total energy + Delta-G solvation = -2797.481489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.50537 -38.76945 -37.40814 -35.81195 -34.85169 -32.33175 -30.63177 -27.33541 -25.54537 -24.81268 -23.39797 -23.12609 -22.81404 -21.23119 -19.63407 -18.33875 -18.18863 -16.82992 -16.69582 -16.08746 -15.86986 -15.32943 -15.06451 -14.78836 -14.63285 -14.17332 -14.03394 -13.41944 -13.24014 -13.03260 -12.89226 -12.69672 -12.48074 -12.36693 -12.29641 -12.15367 -11.99363 -11.90164 -11.56122 -11.23026 -11.20852 -10.96394 -10.82830 -10.54772 -9.84292 -9.26118 -8.16518 -6.26980 1.36842 1.38783 1.52159 1.84641 2.08163 2.43397 2.96881 3.08629 3.12838 3.66419 3.84324 4.02206 4.05101 4.17585 4.21953 4.25800 4.38735 4.50275 4.53427 4.69150 4.74373 4.82533 4.83261 4.89651 4.97176 5.03136 5.05455 5.10296 5.15263 5.33691 5.36869 5.38333 5.44389 5.47754 5.71445 5.90065 6.00980 6.20409 6.62560 6.81694 7.39453 7.55124 8.89220 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.007892 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.854655 B = 3546.901855 C = 4377.378676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.030 3.970 3 H 0.034 0.966 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.272 1.272 12 C 0.518 3.482 13 O -0.570 6.570 14 N -0.581 5.581 15 C 0.152 3.848 16 H 0.087 0.913 17 C -0.153 4.153 18 C -0.166 4.166 19 C -0.195 4.195 20 C -0.148 4.148 21 C 0.077 3.923 22 C -0.213 4.213 23 C -0.185 4.185 24 H 0.071 0.929 25 H 0.013 0.987 26 H 0.063 0.937 27 H 0.265 0.735 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 4.469 15.521 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.009 3.991 3 H 0.052 0.948 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.451 6.451 14 N -0.311 5.311 15 C 0.050 3.950 16 H 0.105 0.895 17 C -0.211 4.211 18 C -0.185 4.185 19 C -0.231 4.231 20 C -0.185 4.185 21 C -0.027 4.027 22 C -0.250 4.250 23 C -0.224 4.224 24 H 0.090 0.910 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.174 0.826 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.526 4.055 15.317 16.044 hybrid contribution 0.302 -0.714 -1.309 1.521 sum -2.224 3.341 14.008 14.571 Atomic orbital electron populations 1.21807 0.95309 0.98784 1.02582 1.18743 0.95087 0.95543 0.89744 0.94811 1.21322 1.31511 1.12598 0.91200 0.93524 1.25579 0.95215 0.95767 1.01331 1.69946 1.37187 1.23502 1.24221 0.85567 0.78373 0.78605 0.79481 1.20579 1.19946 1.19776 1.21642 0.77090 0.84969 0.85355 1.90317 1.43252 1.24790 1.86693 1.47546 1.58726 1.20461 1.04378 1.21051 0.92186 0.81926 0.99869 0.89492 1.22119 0.98427 0.99036 1.01515 1.22521 0.92057 1.02074 1.01877 1.23158 0.95883 1.04460 0.99637 1.23061 1.01772 0.92772 1.00936 1.21782 1.02899 0.88213 0.89841 1.23919 0.93390 1.02684 1.05042 1.23161 0.97660 0.99192 1.02384 0.91017 0.96762 0.91825 0.92580 0.89286 0.94052 0.90764 0.86943 0.89696 0.88146 0.86650 0.87917 0.82552 0.87687 0.87212 0.85716 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.62 71.98 0.62 -5.45 16 2 C 0.03 1.55 1.78 -12.28 -0.02 1.53 16 3 H 0.03 1.83 7.40 -2.39 -0.02 1.81 16 4 C -0.53 -31.33 8.37 25.60 0.21 -31.12 16 5 H 0.05 2.97 6.78 -2.91 -0.02 2.95 16 6 C 0.02 1.15 5.29 84.65 0.45 1.60 16 7 N -0.91 -51.53 11.30 21.45 0.24 -51.29 16 8 Si 0.95 45.70 29.54 68.60 2.03 47.72 16 9 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.52 24.70 6.75 87.66 0.59 25.29 16 13 O -0.57 -30.56 11.36 -3.04 -0.03 -30.60 16 14 N -0.58 -21.01 2.73 -774.04 -2.11 -23.13 16 15 C 0.15 4.53 2.12 44.99 0.10 4.62 16 16 H 0.09 3.06 3.97 -2.39 -0.01 3.05 16 17 C -0.15 -3.68 9.06 71.98 0.65 -3.03 16 18 C -0.17 -3.91 5.24 -10.79 -0.06 -3.96 16 19 C -0.19 -4.52 9.52 30.62 0.29 -4.23 16 20 C -0.15 -2.64 9.70 30.62 0.30 -2.35 16 21 C 0.08 2.30 5.08 44.99 0.23 2.53 16 22 C -0.21 -7.06 9.63 30.59 0.29 -6.77 16 23 C -0.19 -5.67 9.90 30.59 0.30 -5.37 16 24 H 0.07 3.75 5.96 -2.39 -0.01 3.73 16 25 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 2.52 3.06 -2.39 -0.01 2.52 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.09 1.71 6.97 -2.39 -0.02 1.69 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.50 7.28 -2.39 -0.02 1.48 16 31 H 0.11 2.52 7.19 -2.39 -0.02 2.51 16 32 H 0.08 2.29 6.41 -2.39 -0.02 2.27 16 33 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.72 7.26 -2.39 -0.02 1.70 16 36 H 0.16 3.45 7.37 -2.39 -0.02 3.43 16 37 H 0.11 4.56 4.96 -25.61 -0.13 4.44 16 38 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.12 2.83 8.14 -2.39 -0.02 2.82 16 40 H 0.06 2.22 7.83 -2.38 -0.02 2.20 16 Total: -1.00 -67.47 306.91 5.00 -62.47 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.92 Total: 21.52 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.96 Total: -26.71 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.87 Total: -74.41 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.03 Total: -30.60 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -67.47 5.00 -62.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596781379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.925 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds