Wall clock time and date at job start Mon Mar 30 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47184 * 2 1 4 4 C 1.50704 * 109.46821 * 119.99530 * 2 1 3 5 5 H 1.08007 * 119.99996 * 120.00227 * 4 2 1 6 6 C 1.37878 * 120.00292 * 300.00299 * 4 2 1 7 7 N 1.31508 * 120.00003 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99894 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47283 * 89.99740 * 8 6 4 10 10 H 1.48496 * 109.47223 * 210.00188 * 8 6 4 11 11 H 1.48509 * 109.47169 * 330.00358 * 8 6 4 12 12 C 1.50700 * 109.47511 * 239.99496 * 2 1 3 13 13 O 1.21272 * 120.00215 * 263.59008 * 12 2 1 14 14 N 1.34773 * 119.99625 * 83.58742 * 12 2 1 15 15 C 1.46498 * 120.00263 * 6.77095 * 14 12 2 16 16 H 1.08999 * 109.47323 * 359.81755 * 15 14 12 17 17 C 1.53009 * 109.46955 * 119.81490 * 15 14 12 18 18 C 1.52999 * 109.47683 * 239.81286 * 15 14 12 19 19 C 1.52999 * 117.50277 * 248.75053 * 18 15 14 20 20 C 1.53000 * 117.50334 * 180.08666 * 18 15 14 21 21 C 1.46506 * 120.00017 * 186.77104 * 14 12 2 22 22 C 1.53004 * 117.49314 * 17.51330 * 21 14 12 23 23 C 1.52998 * 117.49838 * 308.85387 * 21 14 12 24 24 H 1.09001 * 109.46679 * 67.74855 * 1 2 3 25 25 H 1.08994 * 109.46962 * 307.74611 * 1 2 3 26 26 H 1.08993 * 109.46687 * 187.74243 * 1 2 3 27 27 H 0.97006 * 119.99913 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47064 * 60.00361 * 17 15 14 29 29 H 1.09006 * 109.46824 * 180.02562 * 17 15 14 30 30 H 1.08994 * 109.46941 * 299.99887 * 17 15 14 31 31 H 1.09007 * 115.54280 * 34.41693 * 18 15 14 32 32 H 1.09000 * 117.49663 * 359.97438 * 19 18 15 33 33 H 1.08996 * 117.49924 * 145.01586 * 19 18 15 34 34 H 1.08996 * 117.49890 * 214.98546 * 20 18 15 35 35 H 1.08993 * 117.49678 * 0.02562 * 20 18 15 36 36 H 1.08994 * 115.55034 * 163.17707 * 21 14 12 37 37 H 1.08998 * 117.50377 * 359.97438 * 22 21 14 38 38 H 1.09007 * 117.49531 * 145.02213 * 22 21 14 39 39 H 1.09001 * 117.49320 * 214.97517 * 23 21 14 40 40 H 1.08999 * 117.49968 * 359.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8022 0.8746 2.6991 10 1 0.9770 1.9955 3.9070 11 1 0.8491 2.1774 1.4921 12 6 2.0325 -0.7105 -1.2304 13 8 2.3452 -1.8806 -1.1697 14 7 2.1342 -0.0454 -2.3982 15 6 1.8996 1.4000 -2.4408 16 1 1.6536 1.7579 -1.4411 17 6 3.1616 2.1070 -2.9394 18 6 0.7380 1.7004 -3.3902 19 6 1.0638 2.4234 -4.6987 20 6 0.3367 3.1653 -3.5744 21 6 2.4795 -0.7680 -3.6250 22 6 2.3128 -2.2889 -3.6196 23 6 3.7134 -1.6719 -3.5890 24 1 -0.3633 0.3892 -0.9512 25 1 -0.3633 0.6291 0.8126 26 1 -0.3632 -1.0183 0.1384 27 1 1.9032 -0.5276 4.4376 28 1 3.4076 1.7492 -3.9391 29 1 2.9871 3.1826 -2.9707 30 1 3.9891 1.8931 -2.2631 31 1 -0.0565 0.9544 -3.4117 32 1 2.1056 2.6854 -4.8829 33 1 0.4834 2.1534 -5.5809 34 1 -0.7217 3.3831 -3.7173 35 1 0.9005 3.9151 -3.0194 36 1 2.2680 -0.2418 -4.5558 37 1 1.9467 -2.7519 -2.7033 38 1 1.9921 -2.7633 -4.5472 39 1 4.3135 -1.7406 -4.4963 40 1 4.2685 -1.7287 -2.6527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596781380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:50 Heat of formation + Delta-G solvation = 34.418921 kcal Electronic energy + Delta-G solvation = -19752.182147 eV Core-core repulsion = 16955.653175 eV Total energy + Delta-G solvation = -2796.528971 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10117 -37.88618 -35.97856 -34.14083 -33.17860 -31.07734 -29.36270 -25.19886 -24.56791 -23.93270 -22.38656 -21.96824 -21.19841 -19.99446 -17.79332 -16.94114 -16.70294 -15.78820 -15.18765 -14.96550 -14.68123 -13.96117 -13.77966 -13.36521 -13.00201 -12.78589 -12.62070 -12.22594 -12.04549 -11.76659 -11.55146 -11.47644 -11.18203 -11.16948 -10.88201 -10.67918 -10.42294 -10.35216 -10.29560 -10.00669 -9.88972 -9.62550 -9.06291 -8.59525 -8.40274 -7.88078 -6.06380 -4.06205 3.23615 3.29339 3.34013 3.35776 3.45216 3.81590 4.30758 4.37128 4.69112 4.85807 4.94300 5.08019 5.21145 5.22397 5.28819 5.35145 5.38720 5.50580 5.58374 5.73484 5.77680 5.88325 5.92696 6.02224 6.05145 6.05805 6.13580 6.23840 6.30052 6.38670 6.44858 6.48461 6.69393 6.78202 7.17159 7.25591 7.56290 8.03542 8.52826 9.07937 9.10768 9.52651 11.06677 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.008799 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.362229 B = 3181.244602 C = 4120.058229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.004 4.004 3 H 0.046 0.954 4 C -0.503 4.503 5 H 0.089 0.911 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.533 3.467 13 O -0.523 6.523 14 N -0.592 5.592 15 C 0.162 3.838 16 H 0.108 0.892 17 C -0.163 4.163 18 C -0.160 4.160 19 C -0.186 4.186 20 C -0.175 4.175 21 C 0.079 3.921 22 C -0.195 4.195 23 C -0.191 4.191 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 8.129 -16.350 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.064 0.936 4 C -0.542 4.542 5 H 0.107 0.893 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.324 3.676 13 O -0.398 6.398 14 N -0.324 5.324 15 C 0.059 3.941 16 H 0.125 0.875 17 C -0.221 4.221 18 C -0.179 4.179 19 C -0.223 4.223 20 C -0.212 4.212 21 C -0.026 4.026 22 C -0.232 4.232 23 C -0.230 4.230 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.137 0.863 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.033 7.483 -16.075 17.848 hybrid contribution -0.659 0.896 0.120 1.119 sum -2.693 8.380 -15.956 18.222 Atomic orbital electron populations 1.22071 0.96932 1.01985 0.99025 1.19365 0.93416 0.97154 0.92600 0.93649 1.20889 1.32200 1.13780 0.87294 0.89295 1.24955 0.95748 0.96577 0.95733 1.69880 1.45415 1.40168 0.97873 0.86932 0.80919 0.83854 0.77001 1.20459 1.22255 1.19254 1.21313 0.75635 0.87181 0.83494 1.90439 1.48067 1.17160 1.84097 1.47622 1.70682 1.07178 1.06924 1.20722 0.92866 0.80390 1.00165 0.87480 1.22262 0.97955 0.99950 1.01932 1.22764 1.00895 0.95616 0.98629 1.23156 1.01740 1.04878 0.92486 1.22946 1.00911 0.94657 1.02735 1.21422 1.02123 0.90274 0.88735 1.23748 0.99833 0.95118 1.04544 1.23223 0.91617 1.05335 1.02786 0.94605 0.93462 0.92049 0.92550 0.91972 0.91777 0.91811 0.87438 0.88105 0.89262 0.88886 0.88612 0.86345 0.84759 0.90082 0.89568 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.53 37.16 0.32 -2.72 16 2 C 0.00 -0.09 1.41 -92.92 -0.13 -0.22 16 3 H 0.05 1.03 5.15 -51.93 -0.27 0.76 16 4 C -0.50 -14.51 8.91 -34.44 -0.31 -14.82 16 5 H 0.09 2.92 7.25 -52.48 -0.38 2.54 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 8 Si 0.88 21.31 24.30 -169.99 -4.13 17.18 16 9 H -0.28 -6.55 6.94 56.52 0.39 -6.15 16 10 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.27 -5.94 6.52 56.52 0.37 -5.57 16 12 C 0.53 11.72 6.56 -10.99 -0.07 11.65 16 13 O -0.52 -13.03 11.48 5.56 0.06 -12.97 16 14 N -0.59 -10.19 2.73 -158.58 -0.43 -10.62 16 15 C 0.16 2.33 2.89 -67.93 -0.20 2.14 16 16 H 0.11 1.72 5.26 -51.93 -0.27 1.45 16 17 C -0.16 -1.97 7.79 37.16 0.29 -1.68 16 18 C -0.16 -1.92 5.24 -90.62 -0.47 -2.39 16 19 C -0.19 -1.77 9.57 -26.69 -0.26 -2.03 16 20 C -0.17 -1.75 9.90 -26.69 -0.26 -2.01 16 21 C 0.08 1.21 5.48 -67.93 -0.37 0.83 16 22 C -0.19 -3.16 9.63 -26.69 -0.26 -3.42 16 23 C -0.19 -2.99 9.86 -26.69 -0.26 -3.26 16 24 H 0.03 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.05 1.02 3.52 -51.93 -0.18 0.84 16 26 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 29 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.10 0.90 5.85 -51.93 -0.30 0.60 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.91 7.60 -51.93 -0.39 0.52 16 36 H 0.12 1.49 7.75 -51.93 -0.40 1.09 16 37 H 0.13 2.69 5.33 -51.94 -0.28 2.41 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.84 7.49 -51.93 -0.39 1.46 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -31.52 306.37 -7.32 -38.84 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.13 Total: 5.79 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.08 Total: -15.97 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.34 Total: -37.49 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.06 Total: -12.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.13 Total: 17.18 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.52 -7.32 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596781380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.261 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds