Wall clock time and date at job start Mon Mar 30 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47184 * 2 1 4 4 C 1.50704 * 109.46821 * 119.99530 * 2 1 3 5 5 H 1.08007 * 119.99996 * 120.00227 * 4 2 1 6 6 C 1.37878 * 120.00292 * 300.00299 * 4 2 1 7 7 N 1.31508 * 120.00003 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99894 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47283 * 89.99740 * 8 6 4 10 10 H 1.48496 * 109.47223 * 210.00188 * 8 6 4 11 11 H 1.48509 * 109.47169 * 330.00358 * 8 6 4 12 12 C 1.50700 * 109.47511 * 239.99496 * 2 1 3 13 13 O 1.21272 * 120.00215 * 263.59008 * 12 2 1 14 14 N 1.34773 * 119.99625 * 83.58742 * 12 2 1 15 15 C 1.46498 * 120.00263 * 6.77095 * 14 12 2 16 16 H 1.08999 * 109.47323 * 359.81755 * 15 14 12 17 17 C 1.53009 * 109.46955 * 119.81490 * 15 14 12 18 18 C 1.52999 * 109.47683 * 239.81286 * 15 14 12 19 19 C 1.52999 * 117.50277 * 248.75053 * 18 15 14 20 20 C 1.53000 * 117.50334 * 180.08666 * 18 15 14 21 21 C 1.46506 * 120.00017 * 186.77104 * 14 12 2 22 22 C 1.53004 * 117.49314 * 17.51330 * 21 14 12 23 23 C 1.52998 * 117.49838 * 308.85387 * 21 14 12 24 24 H 1.09001 * 109.46679 * 67.74855 * 1 2 3 25 25 H 1.08994 * 109.46962 * 307.74611 * 1 2 3 26 26 H 1.08993 * 109.46687 * 187.74243 * 1 2 3 27 27 H 0.97006 * 119.99913 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47064 * 60.00361 * 17 15 14 29 29 H 1.09006 * 109.46824 * 180.02562 * 17 15 14 30 30 H 1.08994 * 109.46941 * 299.99887 * 17 15 14 31 31 H 1.09007 * 115.54280 * 34.41693 * 18 15 14 32 32 H 1.09000 * 117.49663 * 359.97438 * 19 18 15 33 33 H 1.08996 * 117.49924 * 145.01586 * 19 18 15 34 34 H 1.08996 * 117.49890 * 214.98546 * 20 18 15 35 35 H 1.08993 * 117.49678 * 0.02562 * 20 18 15 36 36 H 1.08994 * 115.55034 * 163.17707 * 21 14 12 37 37 H 1.08998 * 117.50377 * 359.97438 * 22 21 14 38 38 H 1.09007 * 117.49531 * 145.02213 * 22 21 14 39 39 H 1.09001 * 117.49320 * 214.97517 * 23 21 14 40 40 H 1.08999 * 117.49968 * 359.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8022 0.8746 2.6991 10 1 0.9770 1.9955 3.9070 11 1 0.8491 2.1774 1.4921 12 6 2.0325 -0.7105 -1.2304 13 8 2.3452 -1.8806 -1.1697 14 7 2.1342 -0.0454 -2.3982 15 6 1.8996 1.4000 -2.4408 16 1 1.6536 1.7579 -1.4411 17 6 3.1616 2.1070 -2.9394 18 6 0.7380 1.7004 -3.3902 19 6 1.0638 2.4234 -4.6987 20 6 0.3367 3.1653 -3.5744 21 6 2.4795 -0.7680 -3.6250 22 6 2.3128 -2.2889 -3.6196 23 6 3.7134 -1.6719 -3.5890 24 1 -0.3633 0.3892 -0.9512 25 1 -0.3633 0.6291 0.8126 26 1 -0.3632 -1.0183 0.1384 27 1 1.9032 -0.5276 4.4376 28 1 3.4076 1.7492 -3.9391 29 1 2.9871 3.1826 -2.9707 30 1 3.9891 1.8931 -2.2631 31 1 -0.0565 0.9544 -3.4117 32 1 2.1056 2.6854 -4.8829 33 1 0.4834 2.1534 -5.5809 34 1 -0.7217 3.3831 -3.7173 35 1 0.9005 3.9151 -3.0194 36 1 2.2680 -0.2418 -4.5558 37 1 1.9467 -2.7519 -2.7033 38 1 1.9921 -2.7633 -4.5472 39 1 4.3135 -1.7406 -4.4963 40 1 4.2685 -1.7287 -2.6527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596781380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:50 Heat of formation + Delta-G solvation = 14.344154 kcal Electronic energy + Delta-G solvation = -19753.052654 eV Core-core repulsion = 16955.653175 eV Total energy + Delta-G solvation = -2797.399478 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55581 -38.97763 -37.43066 -35.84224 -34.77197 -33.05693 -30.52178 -27.21872 -25.70814 -25.47335 -23.27867 -23.19140 -22.68008 -21.16608 -19.28798 -18.86675 -18.03579 -17.16594 -16.87911 -16.35497 -15.88971 -15.44766 -15.25123 -14.95190 -14.46221 -14.29599 -14.08487 -13.77919 -13.46984 -13.00854 -12.88918 -12.73902 -12.61564 -12.55846 -12.24016 -12.05642 -11.98095 -11.68254 -11.49130 -11.35054 -11.27898 -11.12812 -10.82160 -10.68410 -10.08757 -9.28614 -8.30497 -6.37888 1.30683 1.35959 1.47531 1.76525 2.01578 2.31374 2.97386 3.03473 3.06337 3.68735 3.78447 4.01496 4.02744 4.13866 4.16981 4.21221 4.27155 4.33984 4.44118 4.51429 4.59181 4.71005 4.80074 4.83804 4.87323 4.91932 4.97912 5.00927 5.09613 5.12925 5.27553 5.37845 5.38533 5.41655 5.46272 5.51977 5.90492 6.21752 6.53785 6.75783 7.23267 7.46658 8.87362 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.008799 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.362229 B = 3181.244602 C = 4120.058229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.004 4.004 3 H 0.063 0.937 4 C -0.518 4.518 5 H 0.024 0.976 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.955 3.045 9 H -0.263 1.263 10 H -0.295 1.295 11 H -0.229 1.229 12 C 0.524 3.476 13 O -0.567 6.567 14 N -0.582 5.582 15 C 0.155 3.845 16 H 0.089 0.911 17 C -0.158 4.158 18 C -0.179 4.179 19 C -0.167 4.167 20 C -0.167 4.167 21 C 0.087 3.913 22 C -0.205 4.205 23 C -0.190 4.190 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.268 0.732 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.161 0.839 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 11.654 -19.640 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.081 0.919 4 C -0.557 4.557 5 H 0.043 0.957 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.222 1.222 11 H -0.152 1.152 12 C 0.315 3.685 13 O -0.446 6.446 14 N -0.312 5.312 15 C 0.052 3.948 16 H 0.107 0.893 17 C -0.216 4.216 18 C -0.198 4.198 19 C -0.204 4.204 20 C -0.205 4.205 21 C -0.016 4.016 22 C -0.243 4.243 23 C -0.229 4.229 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.179 0.821 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.531 11.043 -19.425 22.622 hybrid contribution -0.105 -0.295 1.119 1.162 sum -3.636 10.748 -18.306 21.537 Atomic orbital electron populations 1.21942 0.94854 1.01187 1.01249 1.19277 0.95011 0.97178 0.91116 0.91926 1.21030 1.31785 1.12459 0.90392 0.95721 1.25991 0.97307 1.00691 0.94753 1.70071 1.47507 1.42757 0.98732 0.85776 0.78853 0.79237 0.78241 1.18868 1.22197 1.15226 1.21115 0.75937 0.86677 0.84800 1.90458 1.50141 1.19007 1.85039 1.47586 1.68932 1.08605 1.06106 1.20948 0.95273 0.78216 1.00359 0.89343 1.22246 0.95873 1.01377 1.02111 1.22526 0.99947 0.96985 1.00318 1.23258 1.02577 1.02702 0.91831 1.23063 1.01834 0.93009 1.02568 1.21788 1.01134 0.89803 0.88912 1.23620 1.00402 0.96177 1.04053 1.23191 0.91584 1.05705 1.02398 0.90741 0.93065 0.94034 0.92316 0.90290 0.89109 0.93932 0.88468 0.87023 0.87935 0.87916 0.87958 0.82139 0.89162 0.86691 0.85787 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.53 71.98 0.61 -4.98 16 2 C 0.00 -0.21 1.41 -12.28 -0.02 -0.22 16 3 H 0.06 2.77 5.15 -2.38 -0.01 2.75 16 4 C -0.52 -31.63 8.91 25.60 0.23 -31.40 16 5 H 0.02 1.77 7.25 -2.91 -0.02 1.75 16 6 C 0.01 0.55 5.45 84.66 0.46 1.02 16 7 N -0.95 -61.67 13.96 21.45 0.30 -61.37 16 8 Si 0.95 43.58 24.30 68.60 1.67 45.25 16 9 H -0.26 -11.37 6.94 99.48 0.69 -10.68 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.23 -9.00 6.52 99.48 0.65 -8.36 16 12 C 0.52 23.81 6.56 87.66 0.58 24.38 16 13 O -0.57 -30.45 11.48 -3.00 -0.03 -30.49 16 14 N -0.58 -19.45 2.73 -774.04 -2.11 -21.56 16 15 C 0.15 4.01 2.89 44.99 0.13 4.13 16 16 H 0.09 2.61 5.26 -2.39 -0.01 2.59 16 17 C -0.16 -3.28 7.79 71.99 0.56 -2.72 16 18 C -0.18 -3.54 5.24 -10.79 -0.06 -3.60 16 19 C -0.17 -2.28 9.57 30.62 0.29 -1.98 16 20 C -0.17 -2.51 9.90 30.62 0.30 -2.21 16 21 C 0.09 2.48 5.48 44.99 0.25 2.72 16 22 C -0.20 -6.56 9.63 30.62 0.29 -6.26 16 23 C -0.19 -5.83 9.86 30.62 0.30 -5.53 16 24 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 25 H 0.05 2.07 3.52 -2.39 -0.01 2.06 16 26 H 0.04 1.85 8.13 -2.39 -0.02 1.83 16 27 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 28 H 0.08 1.38 6.47 -2.39 -0.02 1.36 16 29 H 0.09 1.42 7.07 -2.38 -0.02 1.40 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.11 1.32 5.85 -2.39 -0.01 1.30 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.43 7.60 -2.39 -0.02 1.41 16 36 H 0.16 3.25 7.75 -2.39 -0.02 3.23 16 37 H 0.09 3.82 5.33 -2.57 -0.01 3.80 16 38 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 39 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 Total: -1.00 -76.44 306.37 4.71 -71.74 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.95 Total: 23.09 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.93 Total: -26.66 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.81 Total: -82.93 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.03 Total: -30.49 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.67 Total: 45.25 kcal Total: -76.44 4.71 -71.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596781380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.083 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds