Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46511 * 119.99754 * 2 1 4 4 C 1.50692 * 109.47056 * 270.00217 * 3 2 1 5 5 H 1.07996 * 120.00327 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99959 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99530 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99817 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47178 * 60.00479 * 8 6 4 10 10 H 1.48502 * 109.46696 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47425 * 299.99691 * 8 6 4 12 12 C 1.34770 * 120.00527 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00749 * 184.87620 * 12 2 1 14 14 C 1.50706 * 119.99882 * 4.87740 * 12 2 1 15 15 H 1.08999 * 109.47578 * 309.62305 * 14 12 2 16 16 C 1.52943 * 109.47268 * 69.63027 * 14 12 2 17 17 C 1.52936 * 109.76774 * 182.93788 * 16 14 12 18 18 C 1.53180 * 109.45400 * 297.05619 * 17 16 14 19 19 C 1.53157 * 108.88140 * 56.56509 * 18 17 16 20 20 C 1.52804 * 117.75027 * 160.38107 * 19 18 17 21 21 C 1.52838 * 117.68380 * 91.49604 * 19 18 17 22 22 C 1.53034 * 109.37534 * 189.63883 * 14 12 2 23 23 H 1.09002 * 109.46840 * 263.33317 * 1 2 3 24 24 H 1.08993 * 109.47297 * 23.33166 * 1 2 3 25 25 H 1.08995 * 109.46635 * 143.33633 * 1 2 3 26 26 H 1.08998 * 109.47019 * 30.00129 * 3 2 1 27 27 H 1.08993 * 109.46918 * 150.00030 * 3 2 1 28 28 H 0.97003 * 119.99587 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.41260 * 62.86220 * 16 14 12 30 30 H 1.09007 * 109.41201 * 303.01496 * 16 14 12 31 31 H 1.09008 * 109.47280 * 57.05348 * 17 16 14 32 32 H 1.09000 * 109.47689 * 177.05202 * 17 16 14 33 33 H 1.08996 * 109.56702 * 176.38283 * 18 17 16 34 34 H 1.08999 * 109.56717 * 296.74481 * 18 17 16 35 35 H 1.09007 * 117.50048 * 359.84019 * 20 19 18 36 36 H 1.08994 * 117.50292 * 144.88314 * 20 19 18 37 37 H 1.09000 * 117.50667 * 215.22071 * 21 19 18 38 38 H 1.09005 * 117.50550 * 0.26676 * 21 19 18 39 39 H 1.09007 * 109.58241 * 63.60276 * 22 14 12 40 40 H 1.08997 * 109.59586 * 303.21743 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0964 -2.2416 6 6 3.1259 2.8782 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4377 3.4171 -3.4339 9 1 2.1404 3.5938 -4.1345 10 1 4.1801 4.7032 -3.4338 11 1 4.2412 2.3824 -4.1333 12 6 2.1390 -1.1671 -0.0005 13 8 3.3485 -1.1691 0.0888 14 6 1.3896 -2.4699 -0.1121 15 1 0.5841 -2.4898 0.6220 16 6 0.8017 -2.6011 -1.5179 17 6 -0.0214 -3.8863 -1.6164 18 6 0.8934 -5.0959 -1.4011 19 6 1.5969 -4.9507 -0.0484 20 6 2.1866 -6.2097 0.5856 21 6 0.9236 -5.5759 1.1729 22 6 2.3498 -3.6320 0.1514 23 1 -0.3633 -0.1193 1.0207 24 1 -0.3633 0.9436 -0.4070 25 1 -0.3632 -0.8243 -0.6136 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5138 28 1 4.0293 4.4446 -0.8503 29 1 1.6110 -2.6324 -2.2475 30 1 0.1610 -1.7437 -1.7242 31 1 -0.7997 -3.8787 -0.8531 32 1 -0.4808 -3.9490 -2.6029 33 1 0.2985 -6.0092 -1.4070 34 1 1.6371 -5.1373 -2.1968 35 1 2.0729 -7.1476 0.0420 36 1 3.1128 -6.1025 1.1502 37 1 1.0189 -5.0516 2.1238 38 1 -0.0210 -6.0967 1.0155 39 1 2.7205 -3.5748 1.1749 40 1 3.1865 -3.5800 -0.5453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596912483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = -29.012837 kcal Electronic energy + Delta-G solvation = -19148.874452 eV Core-core repulsion = 16349.594873 eV Total energy + Delta-G solvation = -2799.279579 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98774 -38.22588 -34.84079 -34.62195 -32.54039 -30.97454 -28.05609 -27.17029 -25.84718 -23.89620 -22.56519 -22.06570 -21.28495 -18.60507 -18.25066 -16.46503 -16.20038 -15.62228 -15.21686 -14.87135 -14.56746 -14.11297 -13.93553 -13.51472 -13.05002 -12.64932 -12.41886 -12.14375 -12.05993 -11.88700 -11.77085 -11.51979 -11.17406 -11.01883 -10.94360 -10.78916 -10.77642 -10.50389 -10.36237 -10.13511 -9.87798 -9.61366 -9.51896 -8.70475 -8.41285 -7.57036 -6.02070 -4.07011 3.32651 3.37145 3.39001 3.49978 3.71452 4.05783 4.45715 4.60827 4.71528 4.84700 4.91040 5.12973 5.17622 5.30553 5.32814 5.35426 5.49392 5.59044 5.61341 5.69315 5.75301 5.83409 5.90783 5.94930 5.97156 6.06566 6.10273 6.16753 6.23207 6.25892 6.40852 6.48799 6.56594 7.11370 7.49148 7.59963 7.94849 8.26524 8.49339 8.92972 9.16642 9.58117 11.05917 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.033407 B = 0.005250 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.940017 B = 5331.996813 C = 5456.058084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.508 3.492 13 O -0.545 6.545 14 C -0.101 4.101 15 H 0.086 0.914 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.081 4.081 19 C -0.119 4.119 20 C -0.177 4.177 21 C -0.177 4.177 22 C -0.060 4.060 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.290 -16.431 0.928 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.334 5.334 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.295 3.705 13 O -0.423 6.423 14 C -0.122 4.122 15 H 0.104 0.896 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.214 4.214 21 C -0.213 4.213 22 C -0.097 4.097 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.550 -16.213 1.027 18.358 hybrid contribution 0.100 0.466 -0.901 1.019 sum -8.450 -15.747 0.126 17.872 Atomic orbital electron populations 1.21844 0.81706 1.03146 1.00195 1.48119 1.06050 1.07834 1.71426 1.19282 0.92649 0.78220 0.97394 1.21406 1.36539 1.06264 0.92299 0.92551 1.24940 0.95380 0.96403 0.97385 1.69929 1.38381 1.14331 1.30770 0.86566 0.78347 0.77828 0.84720 1.20253 1.21166 1.20200 1.20353 0.87920 0.85090 0.77137 1.90643 1.14280 1.87268 1.50082 1.21247 0.98736 0.93404 0.98835 0.89619 1.21606 1.00037 0.97993 0.95633 1.21505 0.97811 0.94247 1.01442 1.21154 0.97983 0.97790 0.94927 1.21534 1.02151 0.94147 0.94026 1.22965 0.97605 0.96637 1.04202 1.23013 0.96499 1.04166 0.97670 1.20899 0.96782 0.89654 1.02394 0.94022 0.90775 0.91673 0.95161 0.93841 0.92687 0.91315 0.90541 0.91867 0.91794 0.92129 0.91448 0.89100 0.88870 0.88957 0.89140 0.91623 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 9.82 59.85 0.59 1.81 16 2 N -0.60 -13.09 2.86 -182.96 -0.52 -13.61 16 3 C 0.24 6.53 5.17 -5.19 -0.03 6.51 16 4 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.51 10.84 6.93 -10.99 -0.08 10.76 16 13 O -0.54 -14.06 15.46 5.56 0.09 -13.97 16 14 C -0.10 -1.56 1.71 -91.78 -0.16 -1.71 16 15 H 0.09 1.18 7.68 -51.93 -0.40 0.78 16 16 C -0.12 -1.58 4.78 -26.79 -0.13 -1.71 16 17 C -0.11 -1.19 5.93 -26.67 -0.16 -1.34 16 18 C -0.08 -0.84 5.67 -26.56 -0.15 -0.99 16 19 C -0.12 -1.36 1.97 -154.53 -0.30 -1.67 16 20 C -0.18 -1.81 9.99 -26.82 -0.27 -2.08 16 21 C -0.18 -1.78 9.93 -26.80 -0.27 -2.04 16 22 C -0.06 -0.88 4.35 -26.63 -0.12 -0.99 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 25 H 0.06 0.89 4.39 -51.93 -0.23 0.66 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.04 1.32 7.36 -51.93 -0.38 0.93 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.05 5.46 -51.93 -0.28 0.77 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.00 8.09 -51.92 -0.42 0.58 16 40 H 0.08 1.29 7.88 -51.93 -0.41 0.88 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -32.58 318.02 -8.14 -40.72 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.73 Total: -1.49 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.48 Total: -7.24 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.21 Total: -39.83 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.58 -8.14 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.709 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds