Wall clock time and date at job start Mon Mar 30 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46511 * 119.99754 * 2 1 4 4 C 1.50692 * 109.47056 * 270.00217 * 3 2 1 5 5 H 1.07996 * 120.00327 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99959 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99530 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99817 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47178 * 60.00479 * 8 6 4 10 10 H 1.48502 * 109.46696 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47425 * 299.99691 * 8 6 4 12 12 C 1.34770 * 120.00527 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00749 * 184.87620 * 12 2 1 14 14 C 1.50706 * 119.99882 * 4.87740 * 12 2 1 15 15 H 1.08999 * 109.47578 * 309.62305 * 14 12 2 16 16 C 1.52943 * 109.47268 * 69.63027 * 14 12 2 17 17 C 1.52936 * 109.76774 * 182.93788 * 16 14 12 18 18 C 1.53180 * 109.45400 * 297.05619 * 17 16 14 19 19 C 1.53157 * 108.88140 * 56.56509 * 18 17 16 20 20 C 1.52804 * 117.75027 * 160.38107 * 19 18 17 21 21 C 1.52838 * 117.68380 * 91.49604 * 19 18 17 22 22 C 1.53034 * 109.37534 * 189.63883 * 14 12 2 23 23 H 1.09002 * 109.46840 * 263.33317 * 1 2 3 24 24 H 1.08993 * 109.47297 * 23.33166 * 1 2 3 25 25 H 1.08995 * 109.46635 * 143.33633 * 1 2 3 26 26 H 1.08998 * 109.47019 * 30.00129 * 3 2 1 27 27 H 1.08993 * 109.46918 * 150.00030 * 3 2 1 28 28 H 0.97003 * 119.99587 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.41260 * 62.86220 * 16 14 12 30 30 H 1.09007 * 109.41201 * 303.01496 * 16 14 12 31 31 H 1.09008 * 109.47280 * 57.05348 * 17 16 14 32 32 H 1.09000 * 109.47689 * 177.05202 * 17 16 14 33 33 H 1.08996 * 109.56702 * 176.38283 * 18 17 16 34 34 H 1.08999 * 109.56717 * 296.74481 * 18 17 16 35 35 H 1.09007 * 117.50048 * 359.84019 * 20 19 18 36 36 H 1.08994 * 117.50292 * 144.88314 * 20 19 18 37 37 H 1.09000 * 117.50667 * 215.22071 * 21 19 18 38 38 H 1.09005 * 117.50550 * 0.26676 * 21 19 18 39 39 H 1.09007 * 109.58241 * 63.60276 * 22 14 12 40 40 H 1.08997 * 109.59586 * 303.21743 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0964 -2.2416 6 6 3.1259 2.8782 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4377 3.4171 -3.4339 9 1 2.1404 3.5938 -4.1345 10 1 4.1801 4.7032 -3.4338 11 1 4.2412 2.3824 -4.1333 12 6 2.1390 -1.1671 -0.0005 13 8 3.3485 -1.1691 0.0888 14 6 1.3896 -2.4699 -0.1121 15 1 0.5841 -2.4898 0.6220 16 6 0.8017 -2.6011 -1.5179 17 6 -0.0214 -3.8863 -1.6164 18 6 0.8934 -5.0959 -1.4011 19 6 1.5969 -4.9507 -0.0484 20 6 2.1866 -6.2097 0.5856 21 6 0.9236 -5.5759 1.1729 22 6 2.3498 -3.6320 0.1514 23 1 -0.3633 -0.1193 1.0207 24 1 -0.3633 0.9436 -0.4070 25 1 -0.3632 -0.8243 -0.6136 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5138 28 1 4.0293 4.4446 -0.8503 29 1 1.6110 -2.6324 -2.2475 30 1 0.1610 -1.7437 -1.7242 31 1 -0.7997 -3.8787 -0.8531 32 1 -0.4808 -3.9490 -2.6029 33 1 0.2985 -6.0092 -1.4070 34 1 1.6371 -5.1373 -2.1968 35 1 2.0729 -7.1476 0.0420 36 1 3.1128 -6.1025 1.1502 37 1 1.0189 -5.0516 2.1238 38 1 -0.0210 -6.0967 1.0155 39 1 2.7205 -3.5748 1.1749 40 1 3.1865 -3.5800 -0.5453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596912483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:31 Heat of formation + Delta-G solvation = -48.425656 kcal Electronic energy + Delta-G solvation = -19149.716255 eV Core-core repulsion = 16349.594873 eV Total energy + Delta-G solvation = -2800.121382 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33874 -39.52117 -36.64538 -35.77772 -34.62130 -32.11699 -29.87957 -28.34285 -27.41394 -25.63725 -23.57244 -23.35625 -22.35544 -19.90580 -19.56398 -18.67805 -17.70501 -17.17989 -16.49480 -16.19850 -16.01579 -15.78580 -15.07664 -14.66088 -14.39472 -14.03646 -13.93261 -13.58406 -13.50998 -13.41647 -13.14155 -12.85034 -12.76417 -12.52314 -12.33046 -12.20998 -12.06686 -11.87880 -11.77274 -11.68909 -11.42250 -10.78670 -10.65881 -10.51524 -10.30262 -9.40943 -8.23711 -6.39336 1.35156 1.39901 1.47206 1.81701 2.31374 2.45263 2.92212 3.05452 3.55914 3.71703 3.87135 3.94127 4.11857 4.21845 4.24645 4.29878 4.43958 4.48558 4.56419 4.67875 4.71662 4.85142 4.90241 4.94422 4.97668 5.08767 5.09360 5.13410 5.20570 5.22210 5.31032 5.32545 5.35035 5.46733 5.53989 5.55299 5.84135 6.04571 6.68087 6.78828 7.26508 7.47952 8.83329 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.033407 B = 0.005250 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.940017 B = 5331.996813 C = 5456.058084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.257 3.743 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.496 3.504 13 O -0.604 6.604 14 C -0.085 4.085 15 H 0.114 0.886 16 C -0.113 4.113 17 C -0.104 4.104 18 C -0.079 4.079 19 C -0.131 4.131 20 C -0.177 4.177 21 C -0.162 4.162 22 C -0.056 4.056 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.022 0.978 27 H -0.006 1.006 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.000 -18.258 -0.226 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.285 3.715 13 O -0.486 6.486 14 C -0.106 4.106 15 H 0.132 0.868 16 C -0.150 4.150 17 C -0.141 4.141 18 C -0.116 4.116 19 C -0.131 4.131 20 C -0.214 4.214 21 C -0.199 4.199 22 C -0.095 4.095 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.069 0.931 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.319 -18.056 -0.122 21.311 hybrid contribution 0.991 1.045 -0.464 1.513 sum -10.329 -17.011 -0.586 19.909 Atomic orbital electron populations 1.22154 0.78038 1.04312 1.02718 1.48165 1.08344 1.06312 1.71166 1.18766 0.91053 0.80498 0.96132 1.21670 1.37036 1.06633 0.92892 0.92753 1.25899 0.94807 0.96370 1.02147 1.70056 1.38855 1.14781 1.33213 0.85447 0.78946 0.77346 0.78953 1.18201 1.20258 1.20383 1.21527 0.87668 0.86772 0.75484 1.90605 1.17155 1.88244 1.52550 1.21240 0.98728 0.89651 1.01010 0.86778 1.21619 0.99702 1.00372 0.93345 1.21489 0.97497 0.91891 1.03248 1.21176 0.97938 0.98913 0.93611 1.21418 1.03243 0.92647 0.95757 1.23048 0.97666 0.96669 1.03967 1.23093 0.97222 1.03128 0.96433 1.20796 0.96266 0.91783 1.00606 0.91197 0.91293 0.88402 0.95974 0.98754 0.92368 0.93732 0.90356 0.89889 0.89961 0.89473 0.92436 0.87265 0.89802 0.89346 0.86804 0.93070 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.15 9.82 127.77 1.25 3.40 16 2 N -0.61 -27.03 2.86 -851.15 -2.43 -29.46 16 3 C 0.26 14.45 5.17 85.63 0.44 14.89 16 4 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 5 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 6 C 0.01 0.39 5.46 84.66 0.46 0.86 16 7 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 8 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.50 21.86 6.93 87.66 0.61 22.47 16 13 O -0.60 -33.27 15.46 -3.03 -0.05 -33.31 16 14 C -0.09 -2.57 1.71 -11.55 -0.02 -2.59 16 15 H 0.11 2.82 7.68 -2.39 -0.02 2.80 16 16 C -0.11 -2.90 4.78 30.55 0.15 -2.76 16 17 C -0.10 -1.78 5.93 30.63 0.18 -1.60 16 18 C -0.08 -1.38 5.67 30.71 0.17 -1.21 16 19 C -0.13 -2.73 1.97 -52.20 -0.10 -2.83 16 20 C -0.18 -3.21 9.99 30.54 0.31 -2.91 16 21 C -0.16 -2.71 9.93 30.55 0.30 -2.41 16 22 C -0.06 -1.68 4.35 30.66 0.13 -1.55 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.07 2.22 8.02 -2.39 -0.02 2.20 16 25 H 0.10 2.38 4.39 -2.39 -0.01 2.37 16 26 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 27 H -0.01 -0.37 7.36 -2.39 -0.02 -0.39 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.97 5.46 -2.38 -0.01 1.95 16 31 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.05 1.62 8.09 -2.38 -0.02 1.60 16 40 H 0.05 1.62 7.88 -2.39 -0.02 1.60 16 Total: -1.00 -75.25 318.02 4.96 -70.29 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.00 Total: 10.23 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.13 Total: -8.12 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.15 Total: -86.63 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.05 Total: -33.31 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.25 4.96 -70.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.862 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds