Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47209 * 2 1 4 4 C 1.37092 * 119.99982 * 263.48341 * 3 2 1 5 5 H 1.07996 * 120.00504 * 187.67562 * 4 3 2 6 6 C 1.38951 * 119.99860 * 7.67752 * 4 3 2 7 7 N 1.31411 * 120.00508 * 24.59136 * 6 4 3 8 8 Si 1.86807 * 119.99879 * 204.58990 * 6 4 3 9 9 H 1.48492 * 109.47075 * 265.02437 * 8 6 4 10 10 H 1.48502 * 109.46942 * 25.02373 * 8 6 4 11 11 H 1.48503 * 109.47278 * 145.02326 * 8 6 4 12 12 C 1.34773 * 119.99873 * 83.47712 * 3 2 1 13 13 O 1.21292 * 119.99977 * 4.85018 * 12 3 2 14 14 C 1.50700 * 119.99848 * 184.84390 * 12 3 2 15 15 C 1.52994 * 109.64324 * 54.54649 * 14 12 3 16 16 C 1.53024 * 109.64336 * 175.18220 * 14 12 3 17 17 C 1.50068 * 110.14745 * 70.24891 * 16 14 12 18 18 C 1.29446 * 124.07564 * 17.13217 * 17 16 14 19 19 C 1.50702 * 117.96099 * 179.55503 * 18 17 16 20 20 C 1.50065 * 124.07383 * 359.52735 * 18 17 16 21 21 C 1.53024 * 110.14862 * 17.13829 * 20 18 17 22 22 H 1.08999 * 109.46786 * 57.27947 * 1 2 3 23 23 H 1.09003 * 109.46839 * 177.28274 * 1 2 3 24 24 H 1.08998 * 109.47255 * 297.27842 * 1 2 3 25 25 H 1.09004 * 109.47417 * 239.99789 * 2 1 3 26 26 H 1.09001 * 109.47427 * 120.00113 * 2 1 3 27 27 H 0.96997 * 120.00661 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46843 * 63.21751 * 15 14 12 29 29 H 1.09000 * 109.47873 * 183.21916 * 15 14 12 30 30 H 1.09005 * 109.46990 * 303.22629 * 15 14 12 31 31 H 1.08994 * 109.36045 * 190.45379 * 16 14 12 32 32 H 1.09000 * 109.35861 * 310.04352 * 16 14 12 33 33 H 1.07999 * 117.96515 * 197.11332 * 17 16 14 34 34 H 1.08994 * 109.47271 * 269.97543 * 19 18 17 35 35 H 1.09002 * 109.47006 * 29.98050 * 19 18 17 36 36 H 1.09005 * 109.46898 * 149.97934 * 19 18 17 37 37 H 1.09002 * 109.35913 * 256.92437 * 20 18 17 38 38 H 1.09001 * 109.24260 * 137.26864 * 20 18 17 39 39 H 1.08997 * 109.63977 * 190.88079 * 21 20 18 40 40 H 1.08995 * 109.64408 * 70.23936 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3739 1.9826 -1.1796 5 1 2.8490 2.9524 -1.1697 6 6 2.1230 1.3443 -2.3880 7 7 1.1619 0.4521 -2.4729 8 14 3.1520 1.7543 -3.8922 9 1 2.4576 2.7889 -4.7000 10 1 4.4762 2.2697 -3.4606 11 1 3.3404 0.5304 -4.7118 12 6 2.1180 2.0607 1.1596 13 8 1.8878 1.5023 2.2115 14 6 2.5155 3.5143 1.1494 15 6 1.5777 4.2975 0.2287 16 6 2.4386 4.0787 2.5697 17 6 3.5347 3.5001 3.4158 18 6 4.5842 2.9107 2.9396 19 6 5.6058 2.3885 3.9167 20 6 4.8465 2.7146 1.4752 21 6 3.9598 3.6505 0.6509 22 1 -0.3633 0.5555 -0.8646 23 1 -0.3633 -1.0266 -0.0487 24 1 -0.3634 0.4710 0.9134 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.9869 0.0063 -3.3163 28 1 0.5619 4.2526 0.6214 29 1 1.9021 5.3369 0.1784 30 1 1.6008 3.8610 -0.7699 31 1 2.5440 5.1629 2.5339 32 1 1.4728 3.8258 3.0072 33 1 3.4423 3.5808 4.4888 34 1 6.3441 3.1641 4.1197 35 1 5.1095 2.1071 4.8455 36 1 6.1026 1.5163 3.4915 37 1 4.6307 1.6809 1.2047 38 1 5.8939 2.9317 1.2656 39 1 4.0119 3.3718 -0.4016 40 1 4.2957 4.6796 0.7777 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -11.404325 kcal Electronic energy + Delta-G solvation = -20318.623100 eV Core-core repulsion = 17520.107084 eV Total energy + Delta-G solvation = -2798.516016 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89585 -36.93401 -34.86386 -33.45768 -31.49242 -30.33450 -29.46818 -28.02690 -25.02162 -24.06771 -22.96321 -22.44428 -20.62562 -18.76511 -17.76952 -16.23849 -15.23230 -14.84811 -14.36422 -14.05649 -13.95821 -13.66232 -13.48738 -12.85350 -12.83232 -12.24969 -12.04694 -11.86724 -11.77459 -11.67380 -11.49735 -11.19298 -11.12343 -10.99619 -10.93461 -10.65322 -10.56875 -10.38877 -10.19531 -9.70438 -9.63226 -9.06555 -8.80623 -8.18693 -7.95825 -7.68191 -6.36091 -3.78038 2.90817 3.09209 3.21586 3.24178 4.02441 4.09443 4.87003 5.03631 5.24143 5.33817 5.57942 5.65413 5.86420 5.89572 5.92578 6.03623 6.15914 6.17446 6.25413 6.33385 6.39927 6.46194 6.50863 6.57219 6.65779 6.70857 6.77750 6.87693 6.91028 6.96765 7.10371 7.11913 7.31024 7.42327 7.52329 7.65937 7.77806 7.83613 8.49413 9.13101 9.66449 10.07545 10.63529 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.009051 C = 0.008064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.329992 B = 3092.829427 C = 3471.387563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.133 3.867 3 N -0.442 5.442 4 C -0.340 4.340 5 H 0.119 0.881 6 C 0.034 3.966 7 N -0.855 5.855 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.472 3.528 13 O -0.603 6.603 14 C -0.061 4.061 15 C -0.157 4.157 16 C -0.061 4.061 17 C -0.132 4.132 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.077 4.077 21 C -0.115 4.115 22 H 0.081 0.919 23 H 0.032 0.968 24 H 0.024 0.976 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 5.079 3.374 7.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 N -0.160 5.160 4 C -0.467 4.467 5 H 0.136 0.864 6 C -0.170 4.170 7 N -0.493 5.493 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.260 3.740 13 O -0.489 6.489 14 C -0.064 4.064 15 C -0.214 4.214 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.133 4.133 19 C -0.170 4.170 20 C -0.114 4.114 21 C -0.152 4.152 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.114 0.886 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.530 4.630 3.720 7.470 hybrid contribution 0.330 0.058 -0.815 0.881 sum 4.860 4.688 2.905 7.351 Atomic orbital electron populations 1.21920 0.97175 0.99540 1.00958 1.21200 0.94075 0.83627 1.00152 1.43731 1.55681 1.11164 1.05388 1.20108 1.38104 1.05488 0.83006 0.86355 1.25173 0.95894 0.97131 0.98846 1.70164 1.25536 1.27244 1.26342 0.86279 0.80876 0.78130 0.81661 1.20548 1.19320 1.20790 1.19741 0.82693 0.87782 0.83767 1.90508 1.56950 1.70177 1.31300 1.20511 0.96008 0.94569 0.95293 1.22170 0.97953 0.98340 1.02948 1.20233 0.98024 0.97899 0.93679 1.21618 0.94750 1.00247 0.98442 1.20697 0.96880 1.00156 0.95529 1.20848 0.97913 1.00214 0.98018 1.20301 0.98719 1.00787 0.91545 1.21894 0.93297 0.98621 1.01432 0.89977 0.94914 0.95718 0.88627 0.94898 0.92332 0.93558 0.93738 0.88012 0.91875 0.91134 0.89088 0.92553 0.92607 0.92512 0.90760 0.92171 0.88901 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.66 37.16 0.36 -2.89 16 2 C 0.13 3.27 5.28 -4.04 -0.02 3.25 16 3 N -0.44 -10.86 2.64 -114.81 -0.30 -11.16 16 4 C -0.34 -8.10 6.85 -14.94 -0.10 -8.20 16 5 H 0.12 2.64 2.99 -52.49 -0.16 2.48 16 6 C 0.03 0.81 4.93 -17.47 -0.09 0.73 16 7 N -0.85 -21.13 8.67 55.50 0.48 -20.65 16 8 Si 0.90 18.63 29.62 -169.99 -5.03 13.59 16 9 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 C 0.47 11.29 4.74 -10.99 -0.05 11.24 16 13 O -0.60 -16.03 14.69 5.55 0.08 -15.95 16 14 C -0.06 -1.21 0.51 -155.44 -0.08 -1.29 16 15 C -0.16 -2.95 8.13 37.15 0.30 -2.64 16 16 C -0.06 -1.12 4.55 -28.18 -0.13 -1.25 16 17 C -0.13 -2.39 8.39 -35.90 -0.30 -2.69 16 18 C -0.13 -2.35 5.55 -100.94 -0.56 -2.91 16 19 C -0.11 -1.66 9.87 36.01 0.36 -1.31 16 20 C -0.08 -1.39 5.25 -28.18 -0.15 -1.54 16 21 C -0.12 -2.10 4.61 -26.51 -0.12 -2.22 16 22 H 0.08 2.06 6.57 -51.93 -0.34 1.72 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 2.43 5.74 -51.93 -0.30 2.13 16 26 H 0.03 0.82 7.56 -51.93 -0.39 0.43 16 27 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.09 4.62 -51.93 -0.24 1.85 16 31 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 32 H 0.07 1.38 7.85 -51.93 -0.41 0.97 16 33 H 0.09 1.51 7.80 -52.49 -0.41 1.10 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 36 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.07 1.56 7.41 -51.93 -0.38 1.17 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.77 5.06 -51.93 -0.26 1.51 16 40 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -27.08 300.23 -7.07 -34.15 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.24 Total: 7.21 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.58 Total: -11.72 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.18 Total: -31.81 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.08 Total: -15.95 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.08 -7.07 -34.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.746 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds