Wall clock time and date at job start Mon Mar 30 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47209 * 2 1 4 4 C 1.37092 * 119.99982 * 263.48341 * 3 2 1 5 5 H 1.07996 * 120.00504 * 187.67562 * 4 3 2 6 6 C 1.38951 * 119.99860 * 7.67752 * 4 3 2 7 7 N 1.31411 * 120.00508 * 24.59136 * 6 4 3 8 8 Si 1.86807 * 119.99879 * 204.58990 * 6 4 3 9 9 H 1.48492 * 109.47075 * 265.02437 * 8 6 4 10 10 H 1.48502 * 109.46942 * 25.02373 * 8 6 4 11 11 H 1.48503 * 109.47278 * 145.02326 * 8 6 4 12 12 C 1.34773 * 119.99873 * 83.47712 * 3 2 1 13 13 O 1.21292 * 119.99977 * 4.85018 * 12 3 2 14 14 C 1.50700 * 119.99848 * 184.84390 * 12 3 2 15 15 C 1.52994 * 109.64324 * 54.54649 * 14 12 3 16 16 C 1.53024 * 109.64336 * 175.18220 * 14 12 3 17 17 C 1.50068 * 110.14745 * 70.24891 * 16 14 12 18 18 C 1.29446 * 124.07564 * 17.13217 * 17 16 14 19 19 C 1.50702 * 117.96099 * 179.55503 * 18 17 16 20 20 C 1.50065 * 124.07383 * 359.52735 * 18 17 16 21 21 C 1.53024 * 110.14862 * 17.13829 * 20 18 17 22 22 H 1.08999 * 109.46786 * 57.27947 * 1 2 3 23 23 H 1.09003 * 109.46839 * 177.28274 * 1 2 3 24 24 H 1.08998 * 109.47255 * 297.27842 * 1 2 3 25 25 H 1.09004 * 109.47417 * 239.99789 * 2 1 3 26 26 H 1.09001 * 109.47427 * 120.00113 * 2 1 3 27 27 H 0.96997 * 120.00661 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46843 * 63.21751 * 15 14 12 29 29 H 1.09000 * 109.47873 * 183.21916 * 15 14 12 30 30 H 1.09005 * 109.46990 * 303.22629 * 15 14 12 31 31 H 1.08994 * 109.36045 * 190.45379 * 16 14 12 32 32 H 1.09000 * 109.35861 * 310.04352 * 16 14 12 33 33 H 1.07999 * 117.96515 * 197.11332 * 17 16 14 34 34 H 1.08994 * 109.47271 * 269.97543 * 19 18 17 35 35 H 1.09002 * 109.47006 * 29.98050 * 19 18 17 36 36 H 1.09005 * 109.46898 * 149.97934 * 19 18 17 37 37 H 1.09002 * 109.35913 * 256.92437 * 20 18 17 38 38 H 1.09001 * 109.24260 * 137.26864 * 20 18 17 39 39 H 1.08997 * 109.63977 * 190.88079 * 21 20 18 40 40 H 1.08995 * 109.64408 * 70.23936 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3739 1.9826 -1.1796 5 1 2.8490 2.9524 -1.1697 6 6 2.1230 1.3443 -2.3880 7 7 1.1619 0.4521 -2.4729 8 14 3.1520 1.7543 -3.8922 9 1 2.4576 2.7889 -4.7000 10 1 4.4762 2.2697 -3.4606 11 1 3.3404 0.5304 -4.7118 12 6 2.1180 2.0607 1.1596 13 8 1.8878 1.5023 2.2115 14 6 2.5155 3.5143 1.1494 15 6 1.5777 4.2975 0.2287 16 6 2.4386 4.0787 2.5697 17 6 3.5347 3.5001 3.4158 18 6 4.5842 2.9107 2.9396 19 6 5.6058 2.3885 3.9167 20 6 4.8465 2.7146 1.4752 21 6 3.9598 3.6505 0.6509 22 1 -0.3633 0.5555 -0.8646 23 1 -0.3633 -1.0266 -0.0487 24 1 -0.3634 0.4710 0.9134 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.9869 0.0063 -3.3163 28 1 0.5619 4.2526 0.6214 29 1 1.9021 5.3369 0.1784 30 1 1.6008 3.8610 -0.7699 31 1 2.5440 5.1629 2.5339 32 1 1.4728 3.8258 3.0072 33 1 3.4423 3.5808 4.4888 34 1 6.3441 3.1641 4.1197 35 1 5.1095 2.1071 4.8455 36 1 6.1026 1.5163 3.4915 37 1 4.6307 1.6809 1.2047 38 1 5.8939 2.9317 1.2656 39 1 4.0119 3.3718 -0.4016 40 1 4.2957 4.6796 0.7777 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:54 Heat of formation + Delta-G solvation = -24.624905 kcal Electronic energy + Delta-G solvation = -20319.196388 eV Core-core repulsion = 17520.107084 eV Total energy + Delta-G solvation = -2799.089304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.56188 -38.57764 -36.77080 -34.93750 -33.36150 -31.88750 -31.18919 -29.43581 -26.86600 -25.46031 -24.68386 -23.99056 -22.35617 -20.53632 -19.43954 -17.94312 -16.95815 -16.34237 -16.14042 -15.76908 -15.55335 -15.24881 -14.98656 -14.52998 -14.19087 -14.10321 -13.53392 -13.44673 -13.30468 -13.17747 -13.10966 -12.86756 -12.68582 -12.59198 -12.44697 -12.38465 -12.09700 -12.04879 -11.88986 -11.56865 -11.13475 -10.70053 -10.62930 -9.95621 -9.62219 -9.37741 -8.19382 -5.66247 1.45149 1.53981 1.54954 1.63239 2.20068 2.36570 3.10590 3.22042 3.82426 3.94775 4.04717 4.27910 4.40087 4.51061 4.55443 4.63781 4.70011 4.78005 4.81552 4.85423 4.92135 4.92867 4.96425 5.03519 5.06925 5.09941 5.12887 5.16362 5.28972 5.37444 5.45957 5.50320 5.57078 5.66265 5.83192 5.93820 5.99710 6.30417 6.61280 7.26846 7.79487 8.20605 8.81411 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.009051 C = 0.008064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.329992 B = 3092.829427 C = 3471.387563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.133 3.867 3 N -0.451 5.451 4 C -0.351 4.351 5 H 0.136 0.864 6 C -0.007 4.007 7 N -0.881 5.881 8 Si 0.969 3.031 9 H -0.276 1.276 10 H -0.259 1.259 11 H -0.289 1.289 12 C 0.461 3.539 13 O -0.638 6.638 14 C -0.061 4.061 15 C -0.151 4.151 16 C -0.060 4.060 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.111 4.111 20 C -0.077 4.077 21 C -0.111 4.111 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.011 0.989 25 H 0.088 0.912 26 H 0.019 0.981 27 H 0.266 0.734 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 6.894 3.092 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 N -0.168 5.168 4 C -0.477 4.477 5 H 0.152 0.848 6 C -0.209 4.209 7 N -0.520 5.520 8 Si 0.793 3.207 9 H -0.202 1.202 10 H -0.183 1.183 11 H -0.215 1.215 12 C 0.251 3.749 13 O -0.527 6.527 14 C -0.064 4.064 15 C -0.208 4.208 16 C -0.097 4.097 17 C -0.166 4.166 18 C -0.142 4.142 19 C -0.167 4.167 20 C -0.114 4.114 21 C -0.148 4.148 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.030 0.970 25 H 0.106 0.894 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.024 6.459 3.431 9.476 hybrid contribution -0.174 -0.554 -0.703 0.912 sum 5.850 5.906 2.728 8.749 Atomic orbital electron populations 1.21738 0.96417 1.00352 0.99410 1.21120 0.94643 0.84320 0.98928 1.43951 1.55665 1.11017 1.06208 1.20522 1.38146 1.06256 0.82760 0.84752 1.25941 0.96464 0.97185 1.01281 1.70250 1.26510 1.28231 1.26980 0.85284 0.79655 0.77516 0.78211 1.20153 1.18291 1.21489 1.20532 0.81928 0.89473 0.82925 1.90470 1.58413 1.71409 1.32399 1.20561 0.97354 0.91630 0.96864 1.22098 0.97316 1.00131 1.01271 1.20247 0.97260 0.99737 0.92453 1.21787 0.94713 1.00961 0.99159 1.20967 0.97674 0.99794 0.95802 1.20860 0.97736 1.00925 0.97219 1.20293 1.00298 0.98657 0.92106 1.21872 0.92000 1.00357 1.00557 0.91449 0.92989 0.96954 0.89444 0.96232 0.92373 0.94629 0.90097 0.89895 0.88730 0.93127 0.87915 0.89964 0.92499 0.92533 0.94371 0.89589 0.89923 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 9.66 71.98 0.70 -5.13 16 2 C 0.13 6.78 5.28 86.38 0.46 7.23 16 3 N -0.45 -22.52 2.64 -635.53 -1.68 -24.20 16 4 C -0.35 -16.61 6.85 84.04 0.58 -16.03 16 5 H 0.14 5.84 2.99 -2.91 -0.01 5.83 16 6 C -0.01 -0.32 4.93 84.93 0.42 0.09 16 7 N -0.88 -43.88 8.67 21.66 0.19 -43.70 16 8 Si 0.97 37.63 29.62 68.60 2.03 39.66 16 9 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 10 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 11 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 12 C 0.46 22.30 4.74 87.66 0.42 22.72 16 13 O -0.64 -34.71 14.69 -3.07 -0.05 -34.76 16 14 C -0.06 -2.35 0.51 -52.79 -0.03 -2.38 16 15 C -0.15 -5.41 8.13 71.98 0.59 -4.82 16 16 C -0.06 -2.09 4.55 29.66 0.13 -1.96 16 17 C -0.15 -5.10 8.39 27.03 0.23 -4.87 16 18 C -0.14 -4.79 5.55 -15.10 -0.08 -4.87 16 19 C -0.11 -3.01 9.87 71.24 0.70 -2.31 16 20 C -0.08 -2.66 5.25 29.66 0.16 -2.50 16 21 C -0.11 -3.77 4.61 30.74 0.14 -3.63 16 22 H 0.07 3.45 6.57 -2.39 -0.02 3.43 16 23 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.09 4.57 5.74 -2.38 -0.01 4.56 16 26 H 0.02 1.01 7.56 -2.39 -0.02 1.00 16 27 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 28 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 3.31 4.62 -2.38 -0.01 3.30 16 31 H 0.09 2.67 8.11 -2.39 -0.02 2.65 16 32 H 0.05 1.96 7.85 -2.39 -0.02 1.94 16 33 H 0.10 3.23 7.80 -2.91 -0.02 3.21 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.52 7.89 -2.39 -0.02 1.50 16 36 H 0.06 1.52 8.08 -2.38 -0.02 1.50 16 37 H 0.04 1.60 7.41 -2.39 -0.02 1.58 16 38 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.08 2.98 5.06 -2.39 -0.01 2.97 16 40 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 Total: -1.00 -58.44 300.23 5.91 -52.52 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 1.02 Total: 28.94 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.40 Total: -18.47 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -1.49 Total: -67.89 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.05 Total: -34.76 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -58.44 5.91 -52.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.899 kcal (2) G-P(sol) polarization free energy of solvation -58.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds