Wall clock time and date at job start Mon Mar 30 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47354 * 2 1 4 4 C 1.50701 * 109.46602 * 119.99387 * 2 1 3 5 5 H 1.08011 * 119.99709 * 119.99953 * 4 2 1 6 6 C 1.37876 * 120.00665 * 300.00013 * 4 2 1 7 7 N 1.31515 * 119.99516 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00456 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47207 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47118 * 119.99939 * 8 6 4 11 11 H 1.48499 * 109.47222 * 239.99942 * 8 6 4 12 12 N 1.46501 * 109.47125 * 239.99069 * 2 1 3 13 13 C 1.34779 * 119.99510 * 85.00596 * 12 2 1 14 14 O 1.21276 * 120.00306 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99782 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.47626 * 300.01025 * 15 13 12 17 17 C 1.52944 * 109.47567 * 60.02508 * 15 13 12 18 18 C 1.52940 * 109.82609 * 182.97885 * 17 15 13 19 19 C 1.53172 * 109.45028 * 297.01995 * 18 17 15 20 20 C 1.53150 * 108.89103 * 56.56091 * 19 18 17 21 21 C 1.52804 * 117.75251 * 160.37991 * 20 19 18 22 22 C 1.52921 * 117.67646 * 91.51839 * 20 19 18 23 23 C 1.53147 * 115.00230 * 306.06632 * 20 19 18 24 24 H 1.09000 * 109.46922 * 60.00432 * 1 2 3 25 25 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47539 * 300.00622 * 1 2 3 27 27 H 0.96996 * 120.00567 * 180.02562 * 7 6 4 28 28 H 0.96995 * 120.00132 * 265.00261 * 12 2 1 29 29 H 1.09005 * 109.41210 * 303.09018 * 17 15 13 30 30 H 1.08998 * 109.41673 * 62.87075 * 17 15 13 31 31 H 1.09004 * 109.47224 * 57.00737 * 18 17 15 32 32 H 1.09005 * 109.47644 * 177.01679 * 18 17 15 33 33 H 1.09007 * 109.56808 * 296.73498 * 19 18 17 34 34 H 1.09006 * 109.56484 * 176.38272 * 19 18 17 35 35 H 1.09002 * 117.50288 * 144.88843 * 21 20 19 36 36 H 1.09002 * 117.50151 * 359.87724 * 21 20 19 37 37 H 1.09005 * 117.49772 * 0.27850 * 22 20 19 38 38 H 1.08997 * 117.55256 * 215.19575 * 22 20 19 39 39 H 1.08998 * 109.57002 * 173.75734 * 23 20 19 40 40 H 1.08999 * 109.57076 * 294.11751 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3222 -1.1193 4.0081 9 1 3.1471 -2.2861 3.6041 10 1 3.1470 -0.1854 4.8162 11 1 1.1675 -1.5862 4.8166 12 7 2.0183 -0.6908 -1.1961 13 6 2.1471 -0.0185 -2.3571 14 8 1.8583 1.1581 -2.4118 15 6 2.6500 -0.7289 -3.5873 16 1 3.6492 -1.1209 -3.3977 17 6 1.7064 -1.8824 -3.9316 18 6 2.2489 -2.6547 -5.1351 19 6 2.2877 -1.7325 -6.3575 20 6 3.1314 -0.4993 -6.0217 21 6 3.6892 0.3195 -7.1850 22 6 4.6253 -0.5514 -6.3442 23 6 2.7015 0.2551 -4.7601 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7093 1.1622 3.4842 28 1 2.2490 -1.6319 -1.1524 29 1 1.6274 -2.5534 -3.0762 30 1 0.7203 -1.4847 -4.1710 31 1 3.2559 -3.0094 -4.9153 32 1 1.6008 -3.5062 -5.3425 33 1 1.2744 -1.4230 -6.6137 34 1 2.7336 -2.2616 -7.1998 35 1 3.7543 1.3998 -7.0546 36 1 3.4585 -0.0191 -8.1951 37 1 5.0101 -1.4633 -6.8010 38 1 5.3066 -0.0442 -5.6611 39 1 3.4217 1.0440 -4.5433 40 1 1.7147 0.6915 -4.9141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597000111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:29 Heat of formation + Delta-G solvation = -44.952661 kcal Electronic energy + Delta-G solvation = -18875.595512 eV Core-core repulsion = 16075.624731 eV Total energy + Delta-G solvation = -2799.970781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90025 -38.21477 -34.85475 -34.60990 -32.30004 -31.03786 -28.81436 -27.33666 -25.23671 -23.71358 -22.57644 -21.60632 -20.69650 -19.17922 -18.60012 -17.04850 -15.76871 -15.54587 -15.13429 -14.89008 -14.39949 -14.10029 -14.02083 -13.35519 -12.88240 -12.78061 -12.47700 -12.36711 -11.85568 -11.62708 -11.55841 -11.12975 -11.07268 -11.04135 -10.93575 -10.85544 -10.68091 -10.39121 -10.27496 -10.22174 -9.93271 -9.56406 -9.01224 -8.81916 -8.52427 -7.84507 -6.10530 -4.19616 3.24397 3.32119 3.34884 3.47592 3.70006 4.13589 4.38798 4.62685 4.67814 4.82885 4.96845 5.10073 5.16849 5.21713 5.29531 5.38911 5.50137 5.58458 5.62680 5.79320 5.81907 5.87058 5.93885 6.02144 6.08747 6.17945 6.20539 6.29532 6.43980 6.49461 6.85677 7.00165 7.18848 7.51631 7.60608 7.72739 7.95065 8.17977 8.73122 8.81799 9.20486 9.48478 10.95513 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.004588 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.349528 B = 6101.156030 C = 6214.390728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.709 5.709 13 C 0.504 3.496 14 O -0.558 6.558 15 C -0.104 4.104 16 H 0.090 0.910 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.081 4.081 20 C -0.120 4.120 21 C -0.177 4.177 22 C -0.176 4.176 23 C -0.058 4.058 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.388 0.612 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -6.645 -16.158 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.357 5.357 13 C 0.289 3.711 14 O -0.437 6.437 15 C -0.126 4.126 16 H 0.108 0.892 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.214 4.214 22 C -0.213 4.213 23 C -0.095 4.095 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.525 -5.674 -16.006 17.344 hybrid contribution 0.459 -0.881 0.941 1.368 sum 3.984 -6.555 -15.064 16.905 Atomic orbital electron populations 1.22062 0.98542 0.99010 1.00812 1.18725 0.90995 0.93971 0.80207 0.93498 1.21271 1.32261 1.13136 0.90380 0.92087 1.24894 0.94842 0.94964 0.99060 1.69916 1.36020 1.22482 1.23719 0.86402 0.78600 0.79525 0.82619 1.19750 1.20889 1.20890 1.46528 1.65062 1.13470 1.10592 1.20453 0.78521 0.87407 0.84758 1.90637 1.51456 1.16295 1.85299 1.21314 1.00600 0.96726 0.93935 0.89201 1.21469 0.98824 0.96177 0.98242 1.21505 1.01356 0.97579 0.94665 1.21154 0.99417 0.93886 0.97401 1.21552 0.95130 0.98591 0.96728 1.22967 1.04556 0.98234 0.95632 1.23031 0.92847 1.01880 1.03571 1.20893 1.02556 0.95926 0.90166 0.96717 0.95547 0.89244 0.92670 0.78014 0.91325 0.91496 0.91774 0.91799 0.91498 0.92106 0.88853 0.89110 0.89129 0.88869 0.91358 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.71 -14.98 4.94 -54.93 -0.27 -15.25 16 13 C 0.50 10.18 7.12 -10.98 -0.08 10.10 16 14 O -0.56 -13.58 15.62 5.56 0.09 -13.50 16 15 C -0.10 -1.54 2.53 -91.71 -0.23 -1.77 16 16 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.11 -1.37 5.03 -26.79 -0.13 -1.50 16 18 C -0.11 -1.14 5.93 -26.67 -0.16 -1.29 16 19 C -0.08 -0.80 5.67 -26.56 -0.15 -0.95 16 20 C -0.12 -1.34 1.98 -154.50 -0.31 -1.64 16 21 C -0.18 -1.77 9.99 -26.82 -0.27 -2.03 16 22 C -0.18 -1.77 9.93 -26.76 -0.27 -2.04 16 23 C -0.06 -0.81 4.27 -26.56 -0.11 -0.93 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.39 7.12 7.91 -40.82 -0.32 6.80 16 29 H 0.07 0.84 7.47 -51.93 -0.39 0.45 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 40 H 0.07 1.15 8.02 -51.93 -0.42 0.73 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -30.21 319.89 -8.56 -38.77 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.87 Total: 5.61 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.93 Total: -11.66 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.36 Total: -39.79 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.21 -8.56 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.187 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds