Wall clock time and date at job start Mon Mar 30 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47354 * 2 1 4 4 C 1.50701 * 109.46602 * 119.99387 * 2 1 3 5 5 H 1.08011 * 119.99709 * 119.99953 * 4 2 1 6 6 C 1.37876 * 120.00665 * 300.00013 * 4 2 1 7 7 N 1.31515 * 119.99516 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00456 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47207 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47118 * 119.99939 * 8 6 4 11 11 H 1.48499 * 109.47222 * 239.99942 * 8 6 4 12 12 N 1.46501 * 109.47125 * 239.99069 * 2 1 3 13 13 C 1.34779 * 119.99510 * 85.00596 * 12 2 1 14 14 O 1.21276 * 120.00306 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99782 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.47626 * 300.01025 * 15 13 12 17 17 C 1.52944 * 109.47567 * 60.02508 * 15 13 12 18 18 C 1.52940 * 109.82609 * 182.97885 * 17 15 13 19 19 C 1.53172 * 109.45028 * 297.01995 * 18 17 15 20 20 C 1.53150 * 108.89103 * 56.56091 * 19 18 17 21 21 C 1.52804 * 117.75251 * 160.37991 * 20 19 18 22 22 C 1.52921 * 117.67646 * 91.51839 * 20 19 18 23 23 C 1.53147 * 115.00230 * 306.06632 * 20 19 18 24 24 H 1.09000 * 109.46922 * 60.00432 * 1 2 3 25 25 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47539 * 300.00622 * 1 2 3 27 27 H 0.96996 * 120.00567 * 180.02562 * 7 6 4 28 28 H 0.96995 * 120.00132 * 265.00261 * 12 2 1 29 29 H 1.09005 * 109.41210 * 303.09018 * 17 15 13 30 30 H 1.08998 * 109.41673 * 62.87075 * 17 15 13 31 31 H 1.09004 * 109.47224 * 57.00737 * 18 17 15 32 32 H 1.09005 * 109.47644 * 177.01679 * 18 17 15 33 33 H 1.09007 * 109.56808 * 296.73498 * 19 18 17 34 34 H 1.09006 * 109.56484 * 176.38272 * 19 18 17 35 35 H 1.09002 * 117.50288 * 144.88843 * 21 20 19 36 36 H 1.09002 * 117.50151 * 359.87724 * 21 20 19 37 37 H 1.09005 * 117.49772 * 0.27850 * 22 20 19 38 38 H 1.08997 * 117.55256 * 215.19575 * 22 20 19 39 39 H 1.08998 * 109.57002 * 173.75734 * 23 20 19 40 40 H 1.08999 * 109.57076 * 294.11751 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3222 -1.1193 4.0081 9 1 3.1471 -2.2861 3.6041 10 1 3.1470 -0.1854 4.8162 11 1 1.1675 -1.5862 4.8166 12 7 2.0183 -0.6908 -1.1961 13 6 2.1471 -0.0185 -2.3571 14 8 1.8583 1.1581 -2.4118 15 6 2.6500 -0.7289 -3.5873 16 1 3.6492 -1.1209 -3.3977 17 6 1.7064 -1.8824 -3.9316 18 6 2.2489 -2.6547 -5.1351 19 6 2.2877 -1.7325 -6.3575 20 6 3.1314 -0.4993 -6.0217 21 6 3.6892 0.3195 -7.1850 22 6 4.6253 -0.5514 -6.3442 23 6 2.7015 0.2551 -4.7601 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7093 1.1622 3.4842 28 1 2.2490 -1.6319 -1.1524 29 1 1.6274 -2.5534 -3.0762 30 1 0.7203 -1.4847 -4.1710 31 1 3.2559 -3.0094 -4.9153 32 1 1.6008 -3.5062 -5.3425 33 1 1.2744 -1.4230 -6.6137 34 1 2.7336 -2.2616 -7.1998 35 1 3.7543 1.3998 -7.0546 36 1 3.4585 -0.0191 -8.1951 37 1 5.0101 -1.4633 -6.8010 38 1 5.3066 -0.0442 -5.6611 39 1 3.4217 1.0440 -4.5433 40 1 1.7147 0.6915 -4.9141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597000111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:28 Heat of formation + Delta-G solvation = -62.630391 kcal Electronic energy + Delta-G solvation = -18876.362076 eV Core-core repulsion = 16075.624731 eV Total energy + Delta-G solvation = -2800.737345 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.20795 -39.53995 -36.73364 -35.71991 -34.25302 -32.18201 -30.66905 -28.33310 -27.35314 -25.05722 -23.36386 -22.74203 -22.32130 -20.90421 -19.55068 -18.80650 -17.43525 -17.21188 -16.42814 -16.08324 -15.90360 -15.55686 -15.12117 -14.56563 -14.45369 -14.26682 -13.96949 -13.62573 -13.41745 -13.05823 -12.86801 -12.83027 -12.63666 -12.34437 -12.29381 -12.11895 -12.07829 -12.02914 -11.76417 -11.43687 -11.10517 -10.79881 -10.65866 -10.51765 -10.34104 -9.73860 -8.18316 -6.36200 1.44040 1.44746 1.57201 1.83638 2.35098 2.62124 2.92423 3.12052 3.69166 3.71080 3.90368 3.97968 4.13583 4.22571 4.28689 4.39362 4.49475 4.59126 4.70759 4.75516 4.84020 4.90403 4.94672 5.07407 5.08185 5.09217 5.13041 5.20304 5.26111 5.31934 5.33570 5.42636 5.47407 5.53537 5.61528 5.68295 5.90524 6.09224 6.72241 6.98174 7.31912 7.57762 8.88378 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.004588 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.349528 B = 6101.156030 C = 6214.390728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.704 5.704 13 C 0.498 3.502 14 O -0.606 6.606 15 C -0.090 4.090 16 H 0.109 0.891 17 C -0.107 4.107 18 C -0.107 4.107 19 C -0.079 4.079 20 C -0.130 4.130 21 C -0.174 4.174 22 C -0.168 4.168 23 C -0.055 4.055 24 H 0.009 0.991 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -9.517 -17.244 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.352 5.352 13 C 0.285 3.715 14 O -0.488 6.488 15 C -0.112 4.112 16 H 0.127 0.873 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.116 4.116 20 C -0.130 4.130 21 C -0.211 4.211 22 C -0.205 4.205 23 C -0.093 4.093 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.679 -8.586 -17.119 19.715 hybrid contribution 0.094 0.111 1.259 1.267 sum 4.773 -8.475 -15.861 18.606 Atomic orbital electron populations 1.21876 0.98341 0.99435 0.99373 1.18340 0.91132 0.91814 0.82250 0.98779 1.21577 1.32514 1.13512 0.90770 0.90821 1.25833 0.94850 0.95579 1.02424 1.70067 1.37110 1.23997 1.24560 0.85262 0.78104 0.78505 0.78248 1.18247 1.20995 1.20361 1.46293 1.65076 1.14149 1.09708 1.21495 0.77188 0.86973 0.85813 1.90612 1.53360 1.18719 1.86096 1.21297 1.01754 0.97125 0.90986 0.87295 1.21492 0.97640 0.95359 0.99993 1.21487 1.02210 0.97611 0.93088 1.21176 0.99116 0.93188 0.98114 1.21463 0.96479 0.99387 0.95651 1.23045 1.04034 0.97873 0.96172 1.23097 0.91760 1.02532 1.03098 1.20800 1.00892 0.95756 0.91834 0.97201 0.93970 0.91572 0.92560 0.76062 0.90795 0.92763 0.90648 0.89870 0.91890 0.89794 0.89723 0.87209 0.87049 0.89620 0.93260 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.27 14.31 2.56 44.24 0.11 14.42 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 4 C -0.55 -29.29 8.73 25.60 0.22 -29.07 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.24 16 8 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 12 N -0.70 -30.02 4.94 -446.10 -2.21 -32.22 16 13 C 0.50 20.60 7.12 87.66 0.62 21.23 16 14 O -0.61 -31.09 15.62 -3.02 -0.05 -31.14 16 15 C -0.09 -2.61 2.53 -11.50 -0.03 -2.64 16 16 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 17 C -0.11 -2.49 5.03 30.56 0.15 -2.33 16 18 C -0.11 -1.76 5.93 30.63 0.18 -1.57 16 19 C -0.08 -1.30 5.67 30.70 0.17 -1.13 16 20 C -0.13 -2.64 1.98 -52.17 -0.10 -2.75 16 21 C -0.17 -3.13 9.99 30.54 0.31 -2.83 16 22 C -0.17 -2.93 9.93 30.58 0.30 -2.63 16 23 C -0.05 -1.56 4.27 30.70 0.13 -1.43 16 24 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 27 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.40 14.44 7.91 -92.71 -0.73 13.71 16 29 H 0.07 1.64 7.47 -2.38 -0.02 1.62 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.06 8.09 -2.38 -0.02 1.04 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.55 8.09 -2.39 -0.02 1.53 16 40 H 0.05 1.67 8.02 -2.39 -0.02 1.65 16 Total: -1.00 -67.59 319.89 3.48 -64.11 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.27 Total: 23.99 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 3.19 Total: -15.77 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.96 Total: -85.47 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.05 Total: -31.14 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -67.59 3.48 -64.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.475 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds