Wall clock time and date at job start Mon Mar 30 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46944 * 2 1 4 4 C 1.50695 * 109.47104 * 120.00220 * 2 1 3 5 5 H 1.07996 * 120.00669 * 119.99992 * 4 2 1 6 6 C 1.37881 * 120.00065 * 300.00116 * 4 2 1 7 7 N 1.31520 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00408 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46648 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47481 * 120.00030 * 8 6 4 11 11 H 1.48501 * 109.46725 * 240.00230 * 8 6 4 12 12 C 1.50703 * 109.47367 * 240.00012 * 2 1 3 13 13 O 1.21279 * 120.00214 * 250.24028 * 12 2 1 14 14 N 1.34775 * 120.00012 * 70.24481 * 12 2 1 15 15 C 1.46501 * 120.00220 * 175.12647 * 14 12 2 16 16 C 1.46507 * 119.99996 * 354.84755 * 14 12 2 17 17 C 1.53002 * 109.47128 * 113.74355 * 16 14 12 18 18 C 1.52996 * 117.49875 * 13.53067 * 17 16 14 19 19 C 1.52995 * 117.49739 * 304.86935 * 17 16 14 20 20 C 1.53001 * 109.47173 * 233.74674 * 16 14 12 21 21 C 1.53000 * 117.49945 * 128.74572 * 20 16 14 22 22 C 1.53002 * 117.50026 * 60.08688 * 20 16 14 23 23 H 1.08998 * 109.47585 * 304.76627 * 1 2 3 24 24 H 1.08999 * 109.47032 * 64.76331 * 1 2 3 25 25 H 1.09001 * 109.47073 * 184.75951 * 1 2 3 26 26 H 0.97002 * 119.99833 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47435 * 95.55950 * 15 14 12 28 28 H 1.09005 * 109.46833 * 215.56069 * 15 14 12 29 29 H 1.08995 * 109.46802 * 335.55443 * 15 14 12 30 30 H 1.09001 * 109.47045 * 353.74705 * 16 14 12 31 31 H 1.09004 * 115.54792 * 159.19901 * 17 16 14 32 32 H 1.09006 * 117.50142 * 0.02562 * 18 17 16 33 33 H 1.08995 * 117.49858 * 145.01552 * 18 17 16 34 34 H 1.09000 * 117.49874 * 214.97473 * 19 17 16 35 35 H 1.08999 * 117.50297 * 359.97438 * 19 17 16 36 36 H 1.09004 * 115.54707 * 274.41492 * 20 16 14 37 37 H 1.09002 * 117.49546 * 359.97438 * 21 20 16 38 38 H 1.08996 * 117.50034 * 145.01972 * 21 20 16 39 39 H 1.09001 * 117.49786 * 214.98203 * 22 20 16 40 40 H 1.08999 * 117.49460 * 359.97135 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6037 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5867 4.8164 12 6 2.0324 -0.7104 -1.2305 13 8 2.5693 -1.7931 -1.1289 14 7 1.8851 -0.1425 -2.4438 15 6 2.4670 -0.7810 -3.6270 16 6 1.1377 1.1102 -2.5805 17 6 2.0891 2.2268 -3.0153 18 6 3.4734 1.8178 -3.5226 19 6 3.3253 2.4786 -2.1497 20 6 0.0400 0.9371 -3.6321 21 6 -1.3826 1.3429 -3.2417 22 6 -1.0189 -0.1377 -3.3777 23 1 -0.3634 0.5860 0.8442 24 1 -0.3633 0.4382 -0.9296 25 1 -0.3633 -1.0241 0.0853 26 1 0.7094 1.1618 3.4844 27 1 1.7107 -1.3925 -4.1190 28 1 2.8198 -0.0144 -4.3170 29 1 3.3038 -1.4110 -3.3253 30 1 0.6861 1.3701 -1.6231 31 1 1.6171 3.0912 -3.4823 32 1 3.7063 0.7532 -3.5469 33 1 3.9122 2.4134 -4.3230 34 1 3.6669 3.5086 -2.0476 35 1 3.4607 1.8491 -1.2703 36 1 0.3466 1.1072 -4.6641 37 1 -1.5365 1.7329 -2.2355 38 1 -2.0120 1.7797 -4.0170 39 1 -1.4091 -0.6744 -4.2425 40 1 -0.9331 -0.7217 -2.4614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597008624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:38 Heat of formation + Delta-G solvation = 34.871214 kcal Electronic energy + Delta-G solvation = -19950.832931 eV Core-core repulsion = 17154.323573 eV Total energy + Delta-G solvation = -2796.509358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05458 -37.45645 -36.24556 -33.79837 -33.44760 -30.69146 -28.12484 -26.15182 -25.19148 -22.31704 -22.11708 -21.84343 -20.98517 -20.13740 -18.37760 -16.46288 -16.23527 -15.80347 -15.09841 -14.89228 -14.48946 -14.00890 -13.70758 -13.36453 -12.90106 -12.65077 -12.36739 -11.92057 -11.58798 -11.48090 -11.33218 -11.10800 -10.98472 -10.68239 -10.64891 -10.57270 -10.31854 -10.20823 -10.13958 -9.93711 -9.77576 -9.51429 -8.92649 -8.55694 -8.27272 -7.99736 -6.01651 -4.03786 3.33049 3.40613 3.47851 3.55279 3.74040 4.03555 4.20185 4.48939 4.67493 5.05459 5.15678 5.22022 5.25909 5.30773 5.32017 5.46471 5.51422 5.74346 5.81254 5.86163 5.92336 5.97232 6.10108 6.12692 6.17111 6.30357 6.32756 6.39785 6.45286 6.50572 6.67481 6.86469 6.96239 7.20149 7.49056 7.76823 8.01283 8.12512 8.42584 9.04685 9.26975 9.61469 11.06219 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.007610 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.477396 B = 3678.558814 C = 3936.242797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.617 5.617 15 C 0.070 3.930 16 C 0.187 3.813 17 C -0.162 4.162 18 C -0.202 4.202 19 C -0.172 4.172 20 C -0.158 4.158 21 C -0.175 4.175 22 C -0.173 4.173 23 H 0.091 0.909 24 H 0.025 0.975 25 H 0.033 0.967 26 H 0.259 0.741 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 4.608 -13.112 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.311 3.689 13 O -0.421 6.421 14 N -0.352 5.352 15 C -0.073 4.073 16 C 0.083 3.917 17 C -0.181 4.181 18 C -0.238 4.238 19 C -0.209 4.209 20 C -0.177 4.177 21 C -0.212 4.212 22 C -0.210 4.210 23 H 0.109 0.891 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.590 4.100 -12.897 13.626 hybrid contribution 0.237 -0.279 0.678 0.771 sum -1.353 3.821 -12.219 12.873 Atomic orbital electron populations 1.22025 0.96636 1.00828 1.00460 1.18872 0.94076 0.96718 0.89415 0.93180 1.21177 1.30936 1.12627 0.89053 0.90939 1.24932 0.95135 0.95055 0.99018 1.69888 1.37207 1.23052 1.23354 0.86440 0.78645 0.79818 0.82621 1.19605 1.21071 1.21066 1.22011 0.76996 0.85522 0.84341 1.90522 1.43747 1.21693 1.86164 1.48065 1.55448 1.24337 1.07367 1.21840 0.98670 0.97911 0.88864 1.20460 0.89352 0.82507 0.99382 1.22663 0.89932 1.00440 1.05064 1.23586 0.99637 1.02945 0.97659 1.22960 1.01310 1.01449 0.95174 1.22516 0.90175 1.05270 0.99783 1.23024 0.97049 0.98181 1.02960 1.22953 1.02625 0.91830 1.03603 0.89076 0.95665 0.94802 0.93077 0.94026 0.90460 0.91122 0.86264 0.87460 0.86469 0.89682 0.89255 0.88036 0.88042 0.88245 0.89051 0.89332 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.18 37.16 0.30 -2.95 16 2 C 0.03 0.75 1.79 -92.93 -0.17 0.58 16 3 H 0.05 1.28 6.77 -51.92 -0.35 0.93 16 4 C -0.50 -14.24 8.37 -34.44 -0.29 -14.52 16 5 H 0.07 2.20 6.80 -52.49 -0.36 1.85 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.99 11.37 55.43 0.63 -24.36 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.52 12.02 6.96 -10.98 -0.08 11.95 16 13 O -0.55 -14.51 15.06 5.56 0.08 -14.43 16 14 N -0.62 -11.07 2.10 -173.93 -0.36 -11.43 16 15 C 0.07 1.07 8.13 59.85 0.49 1.56 16 16 C 0.19 2.90 1.80 -67.92 -0.12 2.78 16 17 C -0.16 -2.23 5.65 -90.62 -0.51 -2.74 16 18 C -0.20 -2.67 8.66 -26.70 -0.23 -2.90 16 19 C -0.17 -2.59 10.10 -26.70 -0.27 -2.86 16 20 C -0.16 -2.06 4.64 -90.62 -0.42 -2.48 16 21 C -0.17 -2.11 9.80 -26.69 -0.26 -2.37 16 22 C -0.17 -2.33 9.69 -26.69 -0.26 -2.59 16 23 H 0.09 2.27 6.21 -51.93 -0.32 1.95 16 24 H 0.02 0.48 2.73 -51.93 -0.14 0.34 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.98 5.02 -51.93 -0.26 0.72 16 29 H 0.07 1.19 7.33 -51.93 -0.38 0.81 16 30 H 0.12 2.12 3.79 -51.93 -0.20 1.92 16 31 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.12 1.66 4.12 -51.93 -0.21 1.45 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.86 7.31 -51.93 -0.38 1.48 16 36 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 37 H 0.10 1.28 7.44 -51.93 -0.39 0.90 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.63 6.83 -51.93 -0.35 1.27 16 LS Contribution 306.21 15.07 4.61 4.61 Total: -1.00 -30.29 306.21 -7.83 -38.12 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.86 Total: 5.57 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.91 Total: -14.99 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.27 Total: -35.79 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.29 -7.83 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597008624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.989 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds