Wall clock time and date at job start Mon Mar 30 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46944 * 2 1 4 4 C 1.50695 * 109.47104 * 120.00220 * 2 1 3 5 5 H 1.07996 * 120.00669 * 119.99992 * 4 2 1 6 6 C 1.37881 * 120.00065 * 300.00116 * 4 2 1 7 7 N 1.31520 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00408 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46648 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47481 * 120.00030 * 8 6 4 11 11 H 1.48501 * 109.46725 * 240.00230 * 8 6 4 12 12 C 1.50703 * 109.47367 * 240.00012 * 2 1 3 13 13 O 1.21279 * 120.00214 * 250.24028 * 12 2 1 14 14 N 1.34775 * 120.00012 * 70.24481 * 12 2 1 15 15 C 1.46501 * 120.00220 * 175.12647 * 14 12 2 16 16 C 1.46507 * 119.99996 * 354.84755 * 14 12 2 17 17 C 1.53002 * 109.47128 * 113.74355 * 16 14 12 18 18 C 1.52996 * 117.49875 * 13.53067 * 17 16 14 19 19 C 1.52995 * 117.49739 * 304.86935 * 17 16 14 20 20 C 1.53001 * 109.47173 * 233.74674 * 16 14 12 21 21 C 1.53000 * 117.49945 * 128.74572 * 20 16 14 22 22 C 1.53002 * 117.50026 * 60.08688 * 20 16 14 23 23 H 1.08998 * 109.47585 * 304.76627 * 1 2 3 24 24 H 1.08999 * 109.47032 * 64.76331 * 1 2 3 25 25 H 1.09001 * 109.47073 * 184.75951 * 1 2 3 26 26 H 0.97002 * 119.99833 * 180.02562 * 7 6 4 27 27 H 1.08994 * 109.47435 * 95.55950 * 15 14 12 28 28 H 1.09005 * 109.46833 * 215.56069 * 15 14 12 29 29 H 1.08995 * 109.46802 * 335.55443 * 15 14 12 30 30 H 1.09001 * 109.47045 * 353.74705 * 16 14 12 31 31 H 1.09004 * 115.54792 * 159.19901 * 17 16 14 32 32 H 1.09006 * 117.50142 * 0.02562 * 18 17 16 33 33 H 1.08995 * 117.49858 * 145.01552 * 18 17 16 34 34 H 1.09000 * 117.49874 * 214.97473 * 19 17 16 35 35 H 1.08999 * 117.50297 * 359.97438 * 19 17 16 36 36 H 1.09004 * 115.54707 * 274.41492 * 20 16 14 37 37 H 1.09002 * 117.49546 * 359.97438 * 21 20 16 38 38 H 1.08996 * 117.50034 * 145.01972 * 21 20 16 39 39 H 1.09001 * 117.49786 * 214.98203 * 22 20 16 40 40 H 1.08999 * 117.49460 * 359.97135 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6037 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5867 4.8164 12 6 2.0324 -0.7104 -1.2305 13 8 2.5693 -1.7931 -1.1289 14 7 1.8851 -0.1425 -2.4438 15 6 2.4670 -0.7810 -3.6270 16 6 1.1377 1.1102 -2.5805 17 6 2.0891 2.2268 -3.0153 18 6 3.4734 1.8178 -3.5226 19 6 3.3253 2.4786 -2.1497 20 6 0.0400 0.9371 -3.6321 21 6 -1.3826 1.3429 -3.2417 22 6 -1.0189 -0.1377 -3.3777 23 1 -0.3634 0.5860 0.8442 24 1 -0.3633 0.4382 -0.9296 25 1 -0.3633 -1.0241 0.0853 26 1 0.7094 1.1618 3.4844 27 1 1.7107 -1.3925 -4.1190 28 1 2.8198 -0.0144 -4.3170 29 1 3.3038 -1.4110 -3.3253 30 1 0.6861 1.3701 -1.6231 31 1 1.6171 3.0912 -3.4823 32 1 3.7063 0.7532 -3.5469 33 1 3.9122 2.4134 -4.3230 34 1 3.6669 3.5086 -2.0476 35 1 3.4607 1.8491 -1.2703 36 1 0.3466 1.1072 -4.6641 37 1 -1.5365 1.7329 -2.2355 38 1 -2.0120 1.7797 -4.0170 39 1 -1.4091 -0.6744 -4.2425 40 1 -0.9331 -0.7217 -2.4614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597008624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:38 Heat of formation + Delta-G solvation = 18.127971 kcal Electronic energy + Delta-G solvation = -19951.558972 eV Core-core repulsion = 17154.323573 eV Total energy + Delta-G solvation = -2797.235400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53670 -39.01489 -37.32836 -35.84725 -34.93963 -32.70203 -29.43332 -27.66272 -27.27287 -23.99932 -23.21369 -23.06922 -22.07620 -21.50516 -19.95990 -18.35743 -17.69988 -17.49347 -16.87769 -16.28271 -15.88462 -15.46442 -15.11172 -14.86734 -14.68429 -14.28705 -13.79389 -13.64191 -12.99988 -12.94595 -12.75453 -12.71290 -12.60874 -12.37939 -12.27949 -12.18083 -12.05241 -11.75526 -11.36772 -11.18999 -11.03650 -10.93346 -10.73583 -10.59318 -10.22986 -9.48030 -8.17387 -6.27204 1.36054 1.37844 1.51397 1.89706 2.13723 2.43129 2.91415 3.07004 3.12353 3.55979 3.95251 3.97784 4.09647 4.14214 4.21212 4.22535 4.37244 4.54232 4.63290 4.67996 4.69878 4.80335 4.83731 4.85895 4.86596 4.96882 4.99132 5.06748 5.14974 5.27763 5.32943 5.33884 5.37764 5.46098 5.69981 5.76580 5.94254 6.18033 6.59913 6.80811 7.38132 7.50716 8.88888 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.007610 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.477396 B = 3678.558814 C = 3936.242797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.032 3.968 3 H 0.037 0.963 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.592 6.592 14 N -0.603 5.603 15 C 0.068 3.932 16 C 0.178 3.822 17 C -0.152 4.152 18 C -0.185 4.185 19 C -0.195 4.195 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.186 4.186 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.015 0.985 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 6.120 -15.394 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.011 3.989 3 H 0.055 0.945 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.472 6.472 14 N -0.336 5.336 15 C -0.073 4.073 16 C 0.075 3.925 17 C -0.171 4.171 18 C -0.221 4.221 19 C -0.232 4.232 20 C -0.172 4.172 21 C -0.197 4.197 22 C -0.223 4.223 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.257 5.659 -15.213 16.388 hybrid contribution 0.438 -0.705 1.370 1.601 sum -1.820 4.954 -13.844 14.816 Atomic orbital electron populations 1.21827 0.95399 0.99492 1.01509 1.18718 0.94981 0.95623 0.89605 0.94474 1.21298 1.31750 1.12531 0.91337 0.93843 1.25572 0.95168 0.95731 1.01277 1.69959 1.37113 1.23403 1.24230 0.85583 0.78425 0.78619 0.79516 1.20647 1.19713 1.19830 1.21618 0.76869 0.84954 0.85687 1.90488 1.46086 1.23548 1.87096 1.47934 1.54444 1.24700 1.06482 1.22051 0.98331 0.98910 0.88006 1.20621 0.90580 0.81898 0.99405 1.22706 0.89522 1.00488 1.04357 1.23636 0.98851 1.02574 0.97041 1.22891 1.03702 1.01923 0.94729 1.22495 0.89427 1.05241 1.00056 1.23103 0.96498 0.96803 1.03307 1.22932 1.03855 0.92540 1.03018 0.91120 0.92037 0.96561 0.92568 0.92679 0.86791 0.93053 0.89054 0.84262 0.87697 0.86353 0.87445 0.92500 0.85105 0.89541 0.85919 0.87207 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.18 71.98 0.59 -5.36 16 2 C 0.03 1.66 1.79 -12.29 -0.02 1.64 16 3 H 0.04 2.02 6.77 -2.38 -0.02 2.01 16 4 C -0.53 -31.85 8.37 25.60 0.21 -31.63 16 5 H 0.04 2.81 6.80 -2.91 -0.02 2.79 16 6 C 0.02 1.26 5.30 84.65 0.45 1.70 16 7 N -0.91 -51.69 11.37 21.45 0.24 -51.44 16 8 Si 0.95 45.97 29.54 68.60 2.03 48.00 16 9 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.52 25.02 6.96 87.66 0.61 25.63 16 13 O -0.59 -33.23 15.06 -3.03 -0.05 -33.28 16 14 N -0.60 -21.58 2.10 -822.57 -1.72 -23.31 16 15 C 0.07 2.01 8.13 127.77 1.04 3.05 16 16 C 0.18 5.26 1.80 44.99 0.08 5.34 16 17 C -0.15 -3.75 5.65 -10.80 -0.06 -3.81 16 18 C -0.18 -4.32 8.66 30.62 0.27 -4.06 16 19 C -0.20 -5.71 10.10 30.62 0.31 -5.40 16 20 C -0.15 -3.47 4.64 -10.79 -0.05 -3.52 16 21 C -0.16 -3.34 9.80 30.62 0.30 -3.04 16 22 C -0.19 -4.59 9.69 30.62 0.30 -4.30 16 23 H 0.07 3.65 6.21 -2.39 -0.01 3.64 16 24 H 0.06 2.42 2.73 -2.39 -0.01 2.42 16 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.11 2.52 5.02 -2.38 -0.01 2.51 16 29 H 0.05 1.73 7.33 -2.39 -0.02 1.71 16 30 H 0.09 3.24 3.79 -2.39 -0.01 3.23 16 31 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.11 2.74 4.12 -2.38 -0.01 2.73 16 33 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.06 2.19 7.31 -2.39 -0.02 2.17 16 36 H 0.13 2.30 8.11 -2.38 -0.02 2.28 16 37 H 0.09 2.06 7.44 -2.39 -0.02 2.04 16 38 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.07 2.13 6.83 -2.39 -0.02 2.11 16 Total: -1.00 -69.56 306.21 5.56 -64.00 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.04 Total: 19.79 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.02 Total: -23.76 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.48 Total: -74.75 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.05 Total: -33.28 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -69.56 5.56 -64.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597008624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.127 kcal (2) G-P(sol) polarization free energy of solvation -69.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds