Wall clock time and date at job start Mon Mar 30 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 C 1.50699 * 109.47499 * 239.99478 * 2 1 3 5 5 H 1.07998 * 120.00122 * 244.80723 * 4 2 1 6 6 C 1.37875 * 119.99456 * 64.81243 * 4 2 1 7 7 N 1.31517 * 119.99935 * 198.28275 * 6 4 2 8 8 Si 1.86797 * 120.00451 * 18.27664 * 6 4 2 9 9 H 1.48502 * 109.47068 * 89.82918 * 8 6 4 10 10 H 1.48501 * 109.47442 * 209.82774 * 8 6 4 11 11 H 1.48503 * 109.47336 * 329.83357 * 8 6 4 12 12 C 1.50711 * 109.47003 * 119.99466 * 2 1 3 13 13 O 1.21275 * 119.99498 * 105.49311 * 12 2 1 14 14 N 1.34571 * 120.00064 * 285.49292 * 12 2 1 15 15 C 1.47269 * 122.44547 * 356.20808 * 14 12 2 16 16 C 1.52598 * 108.94189 * 120.65256 * 15 14 12 17 17 C 1.52222 * 112.55383 * 51.09948 * 16 15 14 18 18 C 1.52389 * 112.56692 * 310.51180 * 17 16 15 19 19 C 1.47342 * 122.39970 * 176.17505 * 14 12 2 20 20 C 1.52279 * 109.13119 * 120.34435 * 19 14 12 21 21 C 1.51749 * 113.82090 * 48.19488 * 20 19 14 22 22 C 1.51842 * 114.50471 * 316.62922 * 21 20 19 23 23 H 1.08996 * 109.47278 * 293.88545 * 1 2 3 24 24 H 1.08996 * 109.46786 * 173.88302 * 1 2 3 25 25 H 1.09002 * 109.46850 * 53.88571 * 1 2 3 26 26 H 0.96998 * 120.00270 * 179.97438 * 7 6 4 27 27 H 1.10130 * 109.25267 * 0.90419 * 15 14 12 28 28 H 1.09669 * 109.19458 * 289.73709 * 16 15 14 29 29 H 1.09693 * 109.14390 * 172.38899 * 16 15 14 30 30 H 1.10678 * 107.67234 * 192.12267 * 17 16 15 31 31 H 1.08278 * 111.39581 * 76.08106 * 17 16 15 32 32 H 1.09449 * 109.32815 * 290.61204 * 18 17 16 33 33 H 1.09463 * 109.32764 * 172.39061 * 18 17 16 34 34 H 1.10128 * 109.18619 * 0.24906 * 19 14 12 35 35 H 1.10007 * 108.89510 * 169.98604 * 20 19 14 36 36 H 1.09934 * 109.05454 * 286.12154 * 20 19 14 37 37 H 1.11132 * 107.32543 * 197.68121 * 21 20 19 38 38 H 1.08751 * 111.19475 * 83.42549 * 21 20 19 39 39 H 1.09775 * 109.26010 * 283.66952 * 22 21 20 40 40 H 1.09805 * 109.21080 * 166.66146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5878 -1.6316 -1.1331 6 6 1.7831 -0.1844 -2.4802 7 7 1.8886 -0.9461 -3.5472 8 14 1.2954 1.6099 -2.6581 9 1 2.5154 2.4407 -2.8209 10 1 0.4246 1.7704 -3.8503 11 1 0.5584 2.0453 -1.4446 12 6 2.0323 -0.7103 1.2306 13 8 2.4989 -1.8260 1.1387 14 7 1.9631 -0.1067 2.4314 15 6 1.4830 1.2760 2.5941 16 6 0.2695 1.2734 3.5192 17 6 0.5271 0.5225 4.8181 18 6 1.1328 -0.8565 4.5861 19 6 2.3617 -0.7821 3.6787 20 6 3.4875 0.0056 4.3351 21 6 3.2169 1.4956 4.4329 22 6 2.6181 2.1105 3.1803 23 1 -0.3633 0.4161 0.9396 24 1 -0.3633 -1.0218 -0.1095 25 1 -0.3633 0.6057 -0.8302 26 1 1.7128 -0.5761 -4.4265 27 1 1.1972 1.6793 1.6099 28 1 -0.5791 0.8122 2.9996 29 1 -0.0076 2.3089 3.7520 30 1 -0.4477 0.3788 5.3221 31 1 1.1352 1.1062 5.4978 32 1 0.3833 -1.5088 4.1272 33 1 1.4208 -1.2921 5.5481 34 1 2.7058 -1.8017 3.4442 35 1 3.6598 -0.3937 5.3455 36 1 4.4158 -0.1550 3.7684 37 1 4.1917 1.9979 4.6135 38 1 2.6146 1.7292 5.3077 39 1 3.4046 2.2290 2.4236 40 1 2.2395 3.1139 3.4159 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597299481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:27 Heat of formation + Delta-G solvation = -48.845250 kcal Electronic energy + Delta-G solvation = -20143.428822 eV Core-core repulsion = 17343.289245 eV Total energy + Delta-G solvation = -2800.139577 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47250 -37.57413 -33.97249 -32.89166 -32.64060 -32.20818 -30.85063 -26.14649 -25.67215 -25.09187 -22.83350 -21.62665 -20.94723 -19.68770 -17.28823 -16.94421 -15.99215 -15.33063 -15.14734 -14.59612 -14.19238 -13.83700 -13.60500 -13.41837 -13.38487 -13.17337 -13.07085 -12.49898 -12.16482 -11.79969 -11.55831 -11.39428 -11.28544 -10.97924 -10.92890 -10.89414 -10.54991 -10.29717 -10.25375 -10.05939 -9.80412 -9.64984 -9.17947 -8.56310 -8.33905 -8.01047 -6.06270 -3.99040 3.25871 3.33696 3.37010 3.57065 3.64849 4.42498 4.62625 4.84317 4.87803 4.91604 5.06954 5.19649 5.22652 5.23181 5.29365 5.47101 5.54620 5.69560 5.81772 5.87511 5.93726 5.95622 6.02426 6.03134 6.07195 6.15611 6.17352 6.24754 6.31323 6.35527 6.50299 6.59725 6.62916 6.85891 7.12989 7.29880 7.65601 8.17377 8.57731 9.16258 9.20982 9.57947 11.06850 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.007582 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.888511 B = 3691.903295 C = 3908.515266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.005 3.995 3 H 0.040 0.960 4 C -0.511 4.511 5 H 0.089 0.911 6 C 0.077 3.923 7 N -0.887 5.887 8 Si 0.858 3.142 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.256 1.256 12 C 0.536 3.464 13 O -0.536 6.536 14 N -0.616 5.616 15 C 0.138 3.862 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.122 4.122 19 C 0.140 3.860 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.125 4.125 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.263 0.737 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 7.941 17.854 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.017 4.017 3 H 0.058 0.942 4 C -0.548 4.548 5 H 0.107 0.893 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.685 3.315 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.180 1.180 12 C 0.327 3.673 13 O -0.411 6.411 14 N -0.352 5.352 15 C 0.034 3.966 16 C -0.162 4.162 17 C -0.150 4.150 18 C -0.160 4.160 19 C 0.036 3.964 20 C -0.158 4.158 21 C -0.145 4.145 22 C -0.163 4.163 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.058 7.282 17.538 19.101 hybrid contribution -0.241 1.093 -0.241 1.145 sum -2.299 8.375 17.297 19.355 Atomic orbital electron populations 1.22155 0.96743 1.01737 0.99191 1.19161 0.93748 0.96534 0.92256 0.94184 1.20867 1.36057 1.10470 0.87452 0.89263 1.24911 0.94669 0.97197 0.95752 1.70003 1.48782 1.34970 0.98621 0.87269 0.78822 0.87271 0.78148 1.20495 1.21284 1.18027 1.21219 0.76461 0.86206 0.83432 1.90559 1.44822 1.20352 1.85349 1.48528 1.66461 1.13995 1.06214 1.21274 0.92811 0.82789 0.99716 1.21696 0.97910 1.00502 0.96137 1.21293 1.00524 0.96224 0.97004 1.21733 0.97824 0.97142 0.99346 1.21068 0.93291 0.97547 0.84491 1.21501 0.98555 0.95082 1.00627 1.21113 1.00565 0.95265 0.97590 1.21638 0.98493 0.98384 0.97829 0.95143 0.92660 0.92660 0.92671 0.88333 0.91627 0.91469 0.93286 0.91321 0.91866 0.91672 0.88667 0.91726 0.92035 0.93379 0.91719 0.91711 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.34 37.16 0.31 -2.70 16 2 C 0.00 0.11 1.33 -92.92 -0.12 -0.01 16 3 H 0.04 0.92 5.50 -51.93 -0.29 0.63 16 4 C -0.51 -14.97 8.78 -34.44 -0.30 -15.27 16 5 H 0.09 2.99 7.07 -52.49 -0.37 2.62 16 6 C 0.08 2.23 5.33 -17.82 -0.10 2.14 16 7 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 8 Si 0.86 20.69 26.00 -169.99 -4.42 16.27 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.26 -5.58 5.47 56.52 0.31 -5.27 16 12 C 0.54 12.28 6.95 -11.07 -0.08 12.21 16 13 O -0.54 -14.35 15.12 5.56 0.08 -14.26 16 14 N -0.62 -10.87 2.51 -157.41 -0.39 -11.27 16 15 C 0.14 1.99 2.38 -67.92 -0.16 1.83 16 16 C -0.12 -1.47 5.40 -27.33 -0.15 -1.62 16 17 C -0.11 -1.21 5.07 -27.44 -0.14 -1.35 16 18 C -0.12 -1.50 5.54 -27.07 -0.15 -1.65 16 19 C 0.14 2.10 3.22 -67.87 -0.22 1.88 16 20 C -0.12 -1.48 5.39 -27.73 -0.15 -1.63 16 21 C -0.11 -1.18 4.87 -27.95 -0.14 -1.32 16 22 C -0.13 -1.53 5.46 -27.53 -0.15 -1.68 16 23 H 0.03 0.54 5.74 -51.93 -0.30 0.24 16 24 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.05 1.19 5.06 -51.93 -0.26 0.92 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.10 1.55 5.25 -51.29 -0.27 1.28 16 28 H 0.07 0.84 7.17 -51.55 -0.37 0.47 16 29 H 0.07 0.66 8.20 -51.54 -0.42 0.23 16 30 H 0.05 0.47 8.28 -50.97 -0.42 0.05 16 31 H 0.07 0.65 5.40 -52.33 -0.28 0.37 16 32 H 0.06 0.86 8.18 -51.68 -0.42 0.44 16 33 H 0.06 0.67 8.18 -51.67 -0.42 0.24 16 34 H 0.10 1.64 7.20 -51.29 -0.37 1.28 16 35 H 0.06 0.66 8.22 -51.36 -0.42 0.24 16 36 H 0.06 0.85 8.22 -51.40 -0.42 0.43 16 37 H 0.05 0.49 8.30 -50.70 -0.42 0.06 16 38 H 0.06 0.61 5.75 -52.07 -0.30 0.31 16 39 H 0.06 0.88 8.21 -51.49 -0.42 0.45 16 40 H 0.07 0.67 8.21 -51.47 -0.42 0.25 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -32.86 289.93 -7.39 -40.24 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.26 Total: 0.52 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.54 Total: -9.18 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.38 Total: -37.96 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.42 Total: 16.27 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.86 -7.39 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597299481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.601 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds