Wall clock time and date at job start Mon Mar 30 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 C 1.50699 * 109.47499 * 239.99478 * 2 1 3 5 5 H 1.07998 * 120.00122 * 244.80723 * 4 2 1 6 6 C 1.37875 * 119.99456 * 64.81243 * 4 2 1 7 7 N 1.31517 * 119.99935 * 198.28275 * 6 4 2 8 8 Si 1.86797 * 120.00451 * 18.27664 * 6 4 2 9 9 H 1.48502 * 109.47068 * 89.82918 * 8 6 4 10 10 H 1.48501 * 109.47442 * 209.82774 * 8 6 4 11 11 H 1.48503 * 109.47336 * 329.83357 * 8 6 4 12 12 C 1.50711 * 109.47003 * 119.99466 * 2 1 3 13 13 O 1.21275 * 119.99498 * 105.49311 * 12 2 1 14 14 N 1.34571 * 120.00064 * 285.49292 * 12 2 1 15 15 C 1.47269 * 122.44547 * 356.20808 * 14 12 2 16 16 C 1.52598 * 108.94189 * 120.65256 * 15 14 12 17 17 C 1.52222 * 112.55383 * 51.09948 * 16 15 14 18 18 C 1.52389 * 112.56692 * 310.51180 * 17 16 15 19 19 C 1.47342 * 122.39970 * 176.17505 * 14 12 2 20 20 C 1.52279 * 109.13119 * 120.34435 * 19 14 12 21 21 C 1.51749 * 113.82090 * 48.19488 * 20 19 14 22 22 C 1.51842 * 114.50471 * 316.62922 * 21 20 19 23 23 H 1.08996 * 109.47278 * 293.88545 * 1 2 3 24 24 H 1.08996 * 109.46786 * 173.88302 * 1 2 3 25 25 H 1.09002 * 109.46850 * 53.88571 * 1 2 3 26 26 H 0.96998 * 120.00270 * 179.97438 * 7 6 4 27 27 H 1.10130 * 109.25267 * 0.90419 * 15 14 12 28 28 H 1.09669 * 109.19458 * 289.73709 * 16 15 14 29 29 H 1.09693 * 109.14390 * 172.38899 * 16 15 14 30 30 H 1.10678 * 107.67234 * 192.12267 * 17 16 15 31 31 H 1.08278 * 111.39581 * 76.08106 * 17 16 15 32 32 H 1.09449 * 109.32815 * 290.61204 * 18 17 16 33 33 H 1.09463 * 109.32764 * 172.39061 * 18 17 16 34 34 H 1.10128 * 109.18619 * 0.24906 * 19 14 12 35 35 H 1.10007 * 108.89510 * 169.98604 * 20 19 14 36 36 H 1.09934 * 109.05454 * 286.12154 * 20 19 14 37 37 H 1.11132 * 107.32543 * 197.68121 * 21 20 19 38 38 H 1.08751 * 111.19475 * 83.42549 * 21 20 19 39 39 H 1.09775 * 109.26010 * 283.66952 * 22 21 20 40 40 H 1.09805 * 109.21080 * 166.66146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5878 -1.6316 -1.1331 6 6 1.7831 -0.1844 -2.4802 7 7 1.8886 -0.9461 -3.5472 8 14 1.2954 1.6099 -2.6581 9 1 2.5154 2.4407 -2.8209 10 1 0.4246 1.7704 -3.8503 11 1 0.5584 2.0453 -1.4446 12 6 2.0323 -0.7103 1.2306 13 8 2.4989 -1.8260 1.1387 14 7 1.9631 -0.1067 2.4314 15 6 1.4830 1.2760 2.5941 16 6 0.2695 1.2734 3.5192 17 6 0.5271 0.5225 4.8181 18 6 1.1328 -0.8565 4.5861 19 6 2.3617 -0.7821 3.6787 20 6 3.4875 0.0056 4.3351 21 6 3.2169 1.4956 4.4329 22 6 2.6181 2.1105 3.1803 23 1 -0.3633 0.4161 0.9396 24 1 -0.3633 -1.0218 -0.1095 25 1 -0.3633 0.6057 -0.8302 26 1 1.7128 -0.5761 -4.4265 27 1 1.1972 1.6793 1.6099 28 1 -0.5791 0.8122 2.9996 29 1 -0.0076 2.3089 3.7520 30 1 -0.4477 0.3788 5.3221 31 1 1.1352 1.1062 5.4978 32 1 0.3833 -1.5088 4.1272 33 1 1.4208 -1.2921 5.5481 34 1 2.7058 -1.8017 3.4442 35 1 3.6598 -0.3937 5.3455 36 1 4.4158 -0.1550 3.7684 37 1 4.1917 1.9979 4.6135 38 1 2.6146 1.7292 5.3077 39 1 3.4046 2.2290 2.4236 40 1 2.2395 3.1139 3.4159 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597299481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:27 Heat of formation + Delta-G solvation = -71.077330 kcal Electronic energy + Delta-G solvation = -20144.392877 eV Core-core repulsion = 17343.289245 eV Total energy + Delta-G solvation = -2801.103632 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77112 -39.18595 -35.88799 -34.22232 -33.77466 -33.45329 -32.72150 -27.27169 -27.00521 -26.90316 -24.46967 -22.84159 -21.84160 -21.26169 -18.94113 -18.45768 -17.70267 -17.02844 -16.25331 -16.02322 -15.90006 -15.11642 -14.91427 -14.69195 -14.58834 -14.40250 -14.31768 -14.08291 -13.90018 -13.40824 -12.83287 -12.77262 -12.53630 -12.42113 -12.27013 -12.18648 -11.93432 -11.82376 -11.51952 -11.43350 -11.27213 -11.12798 -10.69684 -10.58771 -10.31889 -9.38672 -8.31353 -6.32298 1.34381 1.39306 1.49172 1.87695 2.16774 2.35828 3.01182 3.60102 3.79225 3.93897 4.03206 4.05465 4.13622 4.20916 4.32938 4.39338 4.40787 4.45906 4.57707 4.66700 4.74973 4.78272 4.97659 5.02583 5.04232 5.08710 5.11345 5.15143 5.17754 5.19552 5.27063 5.30682 5.38361 5.48005 5.57105 5.74710 5.81588 6.27390 6.61970 6.82270 7.26470 7.49308 8.86883 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.007582 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.888511 B = 3691.903295 C = 3908.515266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.006 3.994 3 H 0.061 0.939 4 C -0.532 4.532 5 H 0.021 0.979 6 C 0.015 3.985 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.212 1.212 12 C 0.526 3.474 13 O -0.597 6.597 14 N -0.607 5.607 15 C 0.125 3.875 16 C -0.123 4.123 17 C -0.111 4.111 18 C -0.117 4.117 19 C 0.131 3.869 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.125 4.125 23 H 0.071 0.929 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.268 0.732 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 12.304 21.185 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.016 4.016 3 H 0.078 0.922 4 C -0.569 4.569 5 H 0.039 0.961 6 C -0.182 4.182 7 N -0.582 5.582 8 Si 0.758 3.242 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.134 1.134 12 C 0.317 3.683 13 O -0.477 6.477 14 N -0.340 5.340 15 C 0.022 3.978 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.155 4.155 19 C 0.028 3.972 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.163 4.163 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.061 0.939 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.753 11.689 20.944 24.277 hybrid contribution 0.356 -0.398 -1.246 1.356 sum -3.397 11.291 19.697 22.957 Atomic orbital electron populations 1.22019 0.94487 1.00810 1.01596 1.19075 0.95360 0.96618 0.90530 0.92154 1.20983 1.36263 1.09026 0.90662 0.96063 1.25984 0.94411 1.03193 0.94635 1.70173 1.50555 1.37915 0.99527 0.86018 0.79201 0.79003 0.79944 1.19724 1.20800 1.13377 1.21106 0.76478 0.85612 0.85117 1.90528 1.47801 1.22909 1.86495 1.48514 1.64617 1.15509 1.05341 1.21698 0.95113 0.80534 1.00434 1.21723 0.95680 1.02833 0.95839 1.21300 1.01889 0.94704 0.96888 1.21711 0.95667 0.98763 0.99387 1.21325 0.95896 0.95952 0.84030 1.21497 0.95979 0.96622 1.01319 1.21120 1.02002 0.93313 0.97999 1.21675 0.97076 0.99797 0.97759 0.90992 0.95046 0.92079 0.92325 0.89514 0.92836 0.87847 0.91322 0.88829 0.94125 0.89030 0.92682 0.88780 0.94692 0.91986 0.88622 0.93861 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.34 71.98 0.60 -4.92 16 2 C 0.01 0.28 1.33 -12.28 -0.02 0.26 16 3 H 0.06 2.69 5.50 -2.39 -0.01 2.68 16 4 C -0.53 -33.10 8.78 25.60 0.22 -32.87 16 5 H 0.02 1.56 7.07 -2.91 -0.02 1.54 16 6 C 0.02 0.92 5.33 84.65 0.45 1.38 16 7 N -0.94 -61.37 13.96 21.45 0.30 -61.07 16 8 Si 0.94 42.41 26.00 68.60 1.78 44.20 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.21 -8.02 5.47 99.48 0.54 -7.47 16 12 C 0.53 25.31 6.95 87.69 0.61 25.92 16 13 O -0.60 -34.96 15.12 -3.02 -0.05 -35.01 16 14 N -0.61 -21.28 2.51 -770.45 -1.93 -23.21 16 15 C 0.12 3.19 2.38 44.58 0.11 3.30 16 16 C -0.12 -2.30 5.40 30.20 0.16 -2.13 16 17 C -0.11 -1.78 5.07 30.13 0.15 -1.63 16 18 C -0.12 -2.59 5.54 30.37 0.17 -2.42 16 19 C 0.13 3.89 3.22 44.57 0.14 4.03 16 20 C -0.12 -2.65 5.39 29.94 0.16 -2.49 16 21 C -0.11 -1.86 4.87 29.80 0.15 -1.71 16 22 C -0.12 -2.54 5.46 30.08 0.16 -2.37 16 23 H 0.07 2.39 5.74 -2.39 -0.01 2.38 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 2.47 5.06 -2.39 -0.01 2.45 16 26 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 27 H 0.09 2.42 5.25 -1.78 -0.01 2.41 16 28 H 0.05 1.14 7.17 -2.03 -0.01 1.13 16 29 H 0.10 1.29 8.20 -2.02 -0.02 1.27 16 30 H 0.07 0.93 8.28 -1.48 -0.01 0.91 16 31 H 0.09 1.09 5.40 -2.77 -0.01 1.08 16 32 H 0.04 1.07 8.18 -2.15 -0.02 1.05 16 33 H 0.09 1.56 8.18 -2.14 -0.02 1.54 16 34 H 0.05 2.05 7.20 -1.78 -0.01 2.04 16 35 H 0.09 1.61 8.22 -1.85 -0.02 1.60 16 36 H 0.03 0.96 8.22 -1.89 -0.02 0.95 16 37 H 0.06 0.97 8.30 -1.23 -0.01 0.96 16 38 H 0.10 1.13 5.75 -2.52 -0.01 1.11 16 39 H 0.04 1.06 8.21 -1.97 -0.02 1.04 16 40 H 0.10 1.42 8.21 -1.96 -0.02 1.41 16 Total: -1.00 -81.24 289.93 4.09 -77.15 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.91 Total: 13.60 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 3.07 Total: -15.66 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.63 Total: -84.28 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.05 Total: -35.01 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.78 Total: 44.20 kcal Total: -81.24 4.09 -77.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597299481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.077 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds