Wall clock time and date at job start Mon Mar 30 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47261 * 2 1 4 4 C 1.50702 * 109.46699 * 119.99809 * 2 1 3 5 5 H 1.08001 * 119.99927 * 120.00376 * 4 2 1 6 6 C 1.37878 * 119.99946 * 300.27533 * 4 2 1 7 7 N 1.31505 * 120.00185 * 359.72497 * 6 4 2 8 8 Si 1.86807 * 119.99584 * 179.72852 * 6 4 2 9 9 H 1.48491 * 109.47235 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46935 * 120.00122 * 8 6 4 11 11 H 1.48505 * 109.46569 * 239.99911 * 8 6 4 12 12 C 1.50697 * 109.47255 * 239.99708 * 2 1 3 13 13 O 1.21275 * 120.00325 * 253.63366 * 12 2 1 14 14 N 1.34773 * 119.99594 * 73.63726 * 12 2 1 15 15 C 1.46925 * 120.62746 * 185.24605 * 14 12 2 16 16 C 1.52763 * 109.01246 * 233.58109 * 15 14 12 17 17 C 1.53037 * 109.38699 * 305.59382 * 16 15 14 18 18 C 1.53041 * 109.53865 * 61.23430 * 17 16 15 19 19 H 1.08994 * 109.50208 * 58.58583 * 18 17 16 20 20 C 1.53000 * 109.52443 * 178.67287 * 18 17 16 21 21 C 1.52998 * 117.49545 * 248.59730 * 20 18 17 22 22 C 1.53000 * 117.49594 * 179.97438 * 20 18 17 23 23 C 1.46928 * 120.63442 * 5.52872 * 14 12 2 24 24 H 1.08997 * 109.47266 * 185.82452 * 1 2 3 25 25 H 1.09006 * 109.47544 * 305.82847 * 1 2 3 26 26 H 1.09006 * 109.46841 * 65.82591 * 1 2 3 27 27 H 0.97005 * 120.00095 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.58989 * 353.42155 * 15 14 12 29 29 H 1.09001 * 109.58775 * 113.84683 * 15 14 12 30 30 H 1.08998 * 109.56908 * 185.54865 * 16 15 14 31 31 H 1.09006 * 109.35749 * 65.49898 * 16 15 14 32 32 H 1.09001 * 109.46096 * 301.21787 * 17 16 15 33 33 H 1.09001 * 109.45375 * 181.24822 * 17 16 15 34 34 H 1.08994 * 115.55368 * 34.26884 * 20 18 17 35 35 H 1.09000 * 117.50064 * 0.02562 * 21 20 18 36 36 H 1.09006 * 117.49807 * 145.02114 * 21 20 18 37 37 H 1.08998 * 117.50034 * 214.97332 * 22 20 18 38 38 H 1.09002 * 117.50074 * 359.97438 * 22 20 18 39 39 H 1.09000 * 109.58474 * 246.15301 * 23 14 12 40 40 H 1.08994 * 109.58720 * 6.57979 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6944 -0.2426 2.4828 7 7 0.9384 0.8266 2.6034 8 14 2.3108 -1.1277 4.0080 9 1 3.1363 -2.2939 3.6039 10 1 3.1329 -0.1969 4.8221 11 1 1.1523 -1.5961 4.8105 12 6 2.0323 -0.7105 -1.2304 13 8 2.5135 -1.8197 -1.1362 14 7 1.9469 -0.1130 -2.4355 15 6 2.3256 -0.8354 -3.6575 16 6 3.3516 -0.0064 -4.4280 17 6 2.7899 1.3956 -4.6747 18 6 2.5202 2.0822 -3.3338 19 1 3.4453 2.1358 -2.7599 20 6 1.9898 3.4959 -3.5807 21 6 2.8956 4.6674 -3.1962 22 6 1.6574 4.3497 -2.3554 23 6 1.4793 1.2750 -2.5515 24 1 -0.3634 -1.0223 0.1043 25 1 -0.3634 0.6016 0.8332 26 1 -0.3633 0.4209 -0.9376 27 1 0.7004 1.1555 3.4844 28 1 2.7611 -1.7988 -3.3925 29 1 1.4435 -0.9894 -4.2791 30 1 3.5654 -0.4860 -5.3832 31 1 4.2690 0.0669 -3.8438 32 1 1.8595 1.3202 -5.2376 33 1 3.5121 1.9811 -5.2437 34 1 1.3606 3.6146 -4.4628 35 1 3.8696 4.4310 -2.7678 36 1 2.8621 5.5571 -3.8253 37 1 0.8094 5.0303 -2.4312 38 1 1.8162 3.9042 -1.3734 39 1 0.5268 1.2966 -3.0811 40 1 1.3566 1.7036 -1.5569 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597658256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:05 Heat of formation + Delta-G solvation = -28.678418 kcal Electronic energy + Delta-G solvation = -19395.218832 eV Core-core repulsion = 16595.953754 eV Total energy + Delta-G solvation = -2799.265077 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73700 -37.85780 -35.85499 -33.80685 -32.35088 -30.80936 -29.89684 -25.19876 -25.11688 -23.87689 -22.47461 -22.07942 -20.55180 -19.88463 -18.25684 -16.48859 -15.89376 -15.63608 -15.04983 -14.54756 -14.45440 -14.35234 -13.81205 -13.43836 -12.99203 -12.84055 -12.48752 -12.21627 -11.82165 -11.51761 -11.42611 -11.10023 -10.93821 -10.85650 -10.75102 -10.64673 -10.58556 -10.39876 -10.21675 -10.03632 -9.93703 -9.86138 -8.90941 -8.54059 -8.27329 -7.97393 -6.01328 -4.03373 3.33456 3.40914 3.48994 3.65740 3.75708 3.89720 4.48389 4.61234 4.90181 4.95613 5.06052 5.12479 5.21657 5.32424 5.45792 5.53411 5.59617 5.68897 5.74590 5.76395 5.94248 5.97418 6.01461 6.04766 6.15470 6.22326 6.25088 6.33083 6.40346 6.54621 6.69786 6.87058 6.98720 7.19828 7.49418 7.78098 8.01763 8.13692 8.43283 9.04622 9.27360 9.61702 11.06709 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.006847 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.440050 B = 4088.154959 C = 4886.849811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.032 3.968 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.548 6.548 14 N -0.627 5.627 15 C 0.109 3.891 16 C -0.134 4.134 17 C -0.107 4.107 18 C -0.074 4.074 19 H 0.075 0.925 20 C -0.146 4.146 21 C -0.181 4.181 22 C -0.178 4.178 23 C 0.119 3.881 24 H 0.033 0.967 25 H 0.090 0.910 26 H 0.013 0.987 27 H 0.260 0.740 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 6.766 -13.916 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.314 3.686 13 O -0.424 6.424 14 N -0.362 5.362 15 C -0.014 4.014 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.093 4.093 19 H 0.093 0.907 20 C -0.164 4.164 21 C -0.218 4.218 22 C -0.215 4.215 23 C -0.005 4.005 24 H 0.052 0.948 25 H 0.109 0.891 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.007 6.238 -13.695 15.083 hybrid contribution 0.241 -0.247 0.729 0.807 sum 1.249 5.990 -12.967 14.338 Atomic orbital electron populations 1.21724 0.96255 1.00885 0.99863 1.18859 0.94204 0.96535 0.89332 0.93413 1.21189 1.30891 1.12669 0.89084 0.90964 1.24933 0.95113 0.95072 0.99036 1.69887 1.37148 1.23167 1.23368 0.86429 0.78629 0.79829 0.82572 1.19591 1.21078 1.21021 1.22016 0.76036 0.86292 0.84259 1.90509 1.44817 1.21256 1.85785 1.48335 1.67845 1.13593 1.06453 1.21331 0.97164 0.96702 0.86244 1.21837 0.99321 0.95953 1.00099 1.21504 1.00863 0.95591 0.96551 1.21154 0.99262 0.92105 0.96788 0.90694 1.22235 1.03410 0.91368 0.99407 1.22981 0.95612 0.99155 1.04059 1.23001 0.98983 1.03094 0.96423 1.21709 0.95563 0.81237 1.01960 0.94786 0.89142 0.96759 0.93065 0.89497 0.92676 0.91334 0.91683 0.91999 0.92036 0.87969 0.88902 0.89238 0.88899 0.87993 0.92292 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.61 37.16 0.32 -2.75 16 2 C 0.03 0.80 1.79 -92.92 -0.17 0.63 16 3 H 0.05 1.23 6.67 -51.93 -0.35 0.88 16 4 C -0.50 -14.40 8.36 -34.44 -0.29 -14.69 16 5 H 0.07 2.21 6.84 -52.49 -0.36 1.85 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.18 11.38 55.43 0.63 -24.55 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.52 12.40 6.90 -10.99 -0.08 12.33 16 13 O -0.55 -14.77 14.98 5.56 0.08 -14.69 16 14 N -0.63 -11.68 2.98 -173.03 -0.52 -12.20 16 15 C 0.11 1.71 6.41 -3.93 -0.03 1.68 16 16 C -0.13 -1.69 6.06 -26.83 -0.16 -1.85 16 17 C -0.11 -1.22 5.15 -26.69 -0.14 -1.36 16 18 C -0.07 -0.96 2.49 -90.50 -0.23 -1.18 16 19 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 20 C -0.15 -1.63 5.15 -90.62 -0.47 -2.09 16 21 C -0.18 -1.92 10.18 -26.73 -0.27 -2.19 16 22 C -0.18 -2.08 9.80 -26.73 -0.26 -2.34 16 23 C 0.12 1.86 4.32 -3.71 -0.02 1.84 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 2.30 6.24 -51.93 -0.32 1.98 16 26 H 0.01 0.28 6.88 -51.93 -0.36 -0.08 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.09 1.53 7.00 -51.93 -0.36 1.16 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.37 7.68 -51.93 -0.40 0.97 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.70 4.66 -51.93 -0.24 1.46 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -30.77 312.34 -8.57 -39.34 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.58 Total: 0.82 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.87 Total: -10.41 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.12 Total: -36.74 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.77 -8.57 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597658256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.658 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds