Wall clock time and date at job start Mon Mar 30 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47261 * 2 1 4 4 C 1.50702 * 109.46699 * 119.99809 * 2 1 3 5 5 H 1.08001 * 119.99927 * 120.00376 * 4 2 1 6 6 C 1.37878 * 119.99946 * 300.27533 * 4 2 1 7 7 N 1.31505 * 120.00185 * 359.72497 * 6 4 2 8 8 Si 1.86807 * 119.99584 * 179.72852 * 6 4 2 9 9 H 1.48491 * 109.47235 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46935 * 120.00122 * 8 6 4 11 11 H 1.48505 * 109.46569 * 239.99911 * 8 6 4 12 12 C 1.50697 * 109.47255 * 239.99708 * 2 1 3 13 13 O 1.21275 * 120.00325 * 253.63366 * 12 2 1 14 14 N 1.34773 * 119.99594 * 73.63726 * 12 2 1 15 15 C 1.46925 * 120.62746 * 185.24605 * 14 12 2 16 16 C 1.52763 * 109.01246 * 233.58109 * 15 14 12 17 17 C 1.53037 * 109.38699 * 305.59382 * 16 15 14 18 18 C 1.53041 * 109.53865 * 61.23430 * 17 16 15 19 19 H 1.08994 * 109.50208 * 58.58583 * 18 17 16 20 20 C 1.53000 * 109.52443 * 178.67287 * 18 17 16 21 21 C 1.52998 * 117.49545 * 248.59730 * 20 18 17 22 22 C 1.53000 * 117.49594 * 179.97438 * 20 18 17 23 23 C 1.46928 * 120.63442 * 5.52872 * 14 12 2 24 24 H 1.08997 * 109.47266 * 185.82452 * 1 2 3 25 25 H 1.09006 * 109.47544 * 305.82847 * 1 2 3 26 26 H 1.09006 * 109.46841 * 65.82591 * 1 2 3 27 27 H 0.97005 * 120.00095 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.58989 * 353.42155 * 15 14 12 29 29 H 1.09001 * 109.58775 * 113.84683 * 15 14 12 30 30 H 1.08998 * 109.56908 * 185.54865 * 16 15 14 31 31 H 1.09006 * 109.35749 * 65.49898 * 16 15 14 32 32 H 1.09001 * 109.46096 * 301.21787 * 17 16 15 33 33 H 1.09001 * 109.45375 * 181.24822 * 17 16 15 34 34 H 1.08994 * 115.55368 * 34.26884 * 20 18 17 35 35 H 1.09000 * 117.50064 * 0.02562 * 21 20 18 36 36 H 1.09006 * 117.49807 * 145.02114 * 21 20 18 37 37 H 1.08998 * 117.50034 * 214.97332 * 22 20 18 38 38 H 1.09002 * 117.50074 * 359.97438 * 22 20 18 39 39 H 1.09000 * 109.58474 * 246.15301 * 23 14 12 40 40 H 1.08994 * 109.58720 * 6.57979 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6944 -0.2426 2.4828 7 7 0.9384 0.8266 2.6034 8 14 2.3108 -1.1277 4.0080 9 1 3.1363 -2.2939 3.6039 10 1 3.1329 -0.1969 4.8221 11 1 1.1523 -1.5961 4.8105 12 6 2.0323 -0.7105 -1.2304 13 8 2.5135 -1.8197 -1.1362 14 7 1.9469 -0.1130 -2.4355 15 6 2.3256 -0.8354 -3.6575 16 6 3.3516 -0.0064 -4.4280 17 6 2.7899 1.3956 -4.6747 18 6 2.5202 2.0822 -3.3338 19 1 3.4453 2.1358 -2.7599 20 6 1.9898 3.4959 -3.5807 21 6 2.8956 4.6674 -3.1962 22 6 1.6574 4.3497 -2.3554 23 6 1.4793 1.2750 -2.5515 24 1 -0.3634 -1.0223 0.1043 25 1 -0.3634 0.6016 0.8332 26 1 -0.3633 0.4209 -0.9376 27 1 0.7004 1.1555 3.4844 28 1 2.7611 -1.7988 -3.3925 29 1 1.4435 -0.9894 -4.2791 30 1 3.5654 -0.4860 -5.3832 31 1 4.2690 0.0669 -3.8438 32 1 1.8595 1.3202 -5.2376 33 1 3.5121 1.9811 -5.2437 34 1 1.3606 3.6146 -4.4628 35 1 3.8696 4.4310 -2.7678 36 1 2.8621 5.5571 -3.8253 37 1 0.8094 5.0303 -2.4312 38 1 1.8162 3.9042 -1.3734 39 1 0.5268 1.2966 -3.0811 40 1 1.3566 1.7036 -1.5569 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597658256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:05 Heat of formation + Delta-G solvation = -45.993953 kcal Electronic energy + Delta-G solvation = -19395.969690 eV Core-core repulsion = 16595.953754 eV Total energy + Delta-G solvation = -2800.015935 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22897 -39.20043 -37.09718 -35.86616 -33.84808 -32.37821 -31.43821 -27.26286 -26.61280 -25.07002 -24.04985 -23.04282 -21.84338 -20.93454 -19.83027 -18.45444 -17.69674 -17.08249 -16.52591 -16.13139 -15.92167 -15.45935 -15.16825 -14.81806 -14.64673 -14.26750 -13.96402 -13.72638 -13.41164 -12.98124 -12.90168 -12.69798 -12.61485 -12.37713 -12.26028 -12.12125 -11.99672 -11.84681 -11.76011 -11.48245 -11.05082 -10.97712 -10.85349 -10.60646 -10.22733 -9.47358 -8.17481 -6.27406 1.37105 1.38879 1.52514 1.87788 2.19449 2.44677 2.95465 3.11907 3.61290 3.86639 3.95895 4.07287 4.11045 4.16742 4.31161 4.40332 4.43435 4.60069 4.62199 4.69418 4.71200 4.87460 4.90997 4.91905 4.97897 5.01351 5.04123 5.10858 5.14355 5.27687 5.34391 5.36080 5.44934 5.54180 5.69880 5.73571 5.93212 6.17506 6.58556 6.80134 7.37569 7.48799 8.89030 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.006847 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.440050 B = 4088.154959 C = 4886.849811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.031 3.969 3 H 0.039 0.961 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.272 1.272 12 C 0.517 3.483 13 O -0.592 6.592 14 N -0.618 5.618 15 C 0.102 3.898 16 C -0.127 4.127 17 C -0.101 4.101 18 C -0.069 4.069 19 H 0.050 0.950 20 C -0.138 4.138 21 C -0.172 4.172 22 C -0.193 4.193 23 C 0.113 3.887 24 H 0.018 0.982 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 8.105 -15.983 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.010 3.990 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.473 6.473 14 N -0.351 5.351 15 C -0.020 4.020 16 C -0.165 4.165 17 C -0.138 4.138 18 C -0.088 4.088 19 H 0.069 0.931 20 C -0.157 4.157 21 C -0.209 4.209 22 C -0.230 4.230 23 C -0.009 4.009 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.522 7.627 -15.802 17.554 hybrid contribution 0.386 -0.624 1.344 1.531 sum 0.908 7.003 -14.458 16.090 Atomic orbital electron populations 1.21517 0.95104 0.99688 1.00842 1.18742 0.95093 0.95661 0.89497 0.94373 1.21303 1.31797 1.12620 0.91315 0.93819 1.25580 0.95105 0.95740 1.01315 1.69954 1.37013 1.23499 1.24299 0.85560 0.78428 0.78610 0.79405 1.20615 1.19700 1.19771 1.21672 0.76144 0.85743 0.85587 1.90476 1.47064 1.23008 1.86711 1.48295 1.66215 1.14700 1.05905 1.21611 0.99180 0.95931 0.85285 1.21811 0.97327 0.96748 1.00624 1.21500 1.02398 0.94381 0.95518 1.21078 0.97257 0.93256 0.97248 0.93100 1.22240 1.03743 0.89993 0.99693 1.23043 0.94660 0.99678 1.03505 1.22983 1.00458 1.04038 0.95481 1.21913 0.97640 0.79643 1.01674 0.96292 0.90888 0.93454 0.92518 0.92019 0.89922 0.88140 0.93693 0.89888 0.89893 0.85482 0.89833 0.86938 0.87430 0.90834 0.89873 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.48 8.61 71.98 0.62 -4.86 16 2 C 0.03 1.63 1.79 -12.29 -0.02 1.61 16 3 H 0.04 2.06 6.67 -2.38 -0.02 2.05 16 4 C -0.53 -31.95 8.36 25.60 0.21 -31.73 16 5 H 0.04 2.82 6.84 -2.91 -0.02 2.80 16 6 C 0.02 1.26 5.30 84.66 0.45 1.71 16 7 N -0.91 -51.64 11.38 21.45 0.24 -51.40 16 8 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 9 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.52 25.44 6.90 87.66 0.61 26.04 16 13 O -0.59 -33.51 14.98 -3.01 -0.05 -33.55 16 14 N -0.62 -22.94 2.98 -819.74 -2.44 -25.38 16 15 C 0.10 3.07 6.41 86.22 0.55 3.62 16 16 C -0.13 -2.90 6.06 30.53 0.19 -2.71 16 17 C -0.10 -1.91 5.15 30.62 0.16 -1.75 16 18 C -0.07 -1.67 2.49 -10.71 -0.03 -1.69 16 19 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 20 C -0.14 -2.69 5.15 -10.79 -0.06 -2.75 16 21 C -0.17 -3.25 10.18 30.60 0.31 -2.94 16 22 C -0.19 -4.25 9.80 30.60 0.30 -3.95 16 23 C 0.11 3.43 4.32 86.36 0.37 3.80 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 3.77 6.24 -2.38 -0.01 3.76 16 26 H 0.05 1.90 6.88 -2.38 -0.02 1.89 16 27 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 28 H 0.06 2.19 7.00 -2.39 -0.02 2.17 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.13 1.92 8.11 -2.39 -0.02 1.91 16 35 H 0.08 1.74 8.05 -2.39 -0.02 1.72 16 36 H 0.11 1.64 8.14 -2.38 -0.02 1.63 16 37 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 2.61 4.66 -2.39 -0.01 2.60 16 Total: -1.00 -69.24 312.34 4.45 -64.79 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.00 Total: 13.29 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 3.66 Total: -15.59 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.20 Total: -76.78 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.55 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.24 4.45 -64.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597658256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.798 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds