Wall clock time and date at job start Mon Mar 30 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46843 * 2 1 4 4 C 1.50694 * 109.47410 * 120.00031 * 2 1 3 5 5 H 1.08008 * 119.99965 * 119.99738 * 4 2 1 6 6 C 1.37873 * 120.00291 * 300.00016 * 4 2 1 7 7 N 1.31516 * 120.00276 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99830 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46948 * 90.00343 * 8 6 4 10 10 H 1.48500 * 109.46941 * 210.00033 * 8 6 4 11 11 H 1.48492 * 109.47056 * 330.00222 * 8 6 4 12 12 C 1.50701 * 109.46564 * 240.00431 * 2 1 3 13 13 O 1.21288 * 119.99716 * 273.85262 * 12 2 1 14 14 N 1.34775 * 120.00116 * 94.13336 * 12 2 1 15 15 C 1.47065 * 136.05614 * 354.74106 * 14 12 2 16 16 C 1.53503 * 87.98165 * 207.08225 * 15 14 12 17 17 C 1.53011 * 114.20339 * 87.52046 * 16 15 14 18 18 C 1.53000 * 114.20564 * 220.33958 * 16 15 14 19 19 C 1.47068 * 136.05675 * 174.37176 * 14 12 2 20 20 H 1.08995 * 113.47000 * 38.12562 * 19 14 12 21 21 C 1.53003 * 113.46454 * 267.69433 * 19 14 12 22 22 C 1.52999 * 117.49915 * 148.12640 * 21 19 14 23 23 C 1.52993 * 59.99877 * 252.50700 * 22 21 19 24 24 H 1.09002 * 109.47439 * 182.17140 * 1 2 3 25 25 H 1.09003 * 109.46706 * 302.16377 * 1 2 3 26 26 H 1.08992 * 109.47666 * 62.16527 * 1 2 3 27 27 H 0.97000 * 120.00276 * 180.02562 * 7 6 4 28 28 H 1.09002 * 113.46867 * 321.85673 * 15 14 12 29 29 H 1.08995 * 113.47147 * 92.25062 * 15 14 12 30 30 H 1.08997 * 109.46954 * 79.50376 * 17 16 15 31 31 H 1.08997 * 109.46608 * 199.50341 * 17 16 15 32 32 H 1.08993 * 109.46781 * 319.49926 * 17 16 15 33 33 H 1.08995 * 109.46915 * 40.49973 * 18 16 15 34 34 H 1.09002 * 109.46862 * 160.49770 * 18 16 15 35 35 H 1.08998 * 109.47515 * 280.49669 * 18 16 15 36 36 H 1.09008 * 115.54876 * 293.83393 * 21 19 14 37 37 H 1.09001 * 117.49864 * 359.97438 * 22 21 19 38 38 H 1.09006 * 117.49692 * 145.01537 * 22 21 19 39 39 H 1.09007 * 117.50097 * 252.50702 * 23 22 21 40 40 H 1.09002 * 117.51562 * 107.48277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1383 -0.8591 3.5565 8 14 0.6260 1.2798 2.6542 9 1 -0.8019 0.8744 2.6995 10 1 0.9774 1.9953 3.9071 11 1 0.8492 2.1773 1.4924 12 6 2.0322 -0.7103 -1.2306 13 8 2.1677 -1.9156 -1.2221 14 7 2.3361 -0.0058 -2.3386 15 6 2.2281 1.3980 -2.7635 16 6 2.1422 0.8963 -4.2117 17 6 0.7235 0.5603 -4.6761 18 6 2.9262 1.7430 -5.2165 19 6 2.9276 -0.3012 -3.6523 20 1 2.6126 -1.2597 -4.0645 21 6 4.4448 -0.1081 -3.6946 22 6 5.2470 -1.0177 -4.6273 23 6 5.3154 -1.2235 -3.1128 24 1 -0.3634 -1.0269 0.0389 25 1 -0.3633 0.5471 0.8700 26 1 -0.3634 0.4798 -0.9087 27 1 1.9037 -0.5279 4.4375 28 1 1.3170 1.8871 -2.4189 29 1 3.1242 1.9837 -2.5586 30 1 0.2005 1.4793 -4.9403 31 1 0.7716 -0.0936 -5.5468 32 1 0.1881 0.0557 -3.8719 33 1 3.8793 2.0377 -4.7775 34 1 3.1069 1.1602 -6.1197 35 1 2.3509 2.6340 -5.4679 36 1 4.7918 0.9178 -3.5705 37 1 4.6939 -1.7540 -5.2105 38 1 6.1219 -0.5903 -5.1173 39 1 6.2355 -0.9316 -2.6063 40 1 4.8074 -2.0948 -2.6996 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597669624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:20 Heat of formation + Delta-G solvation = 23.024102 kcal Electronic energy + Delta-G solvation = -19463.051218 eV Core-core repulsion = 16666.028131 eV Total energy + Delta-G solvation = -2797.023088 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80015 -37.74733 -36.19383 -33.73040 -32.18329 -31.10335 -27.67173 -26.71130 -25.96698 -25.14873 -22.46860 -22.20304 -21.09942 -18.86390 -17.84555 -16.83365 -16.01673 -15.64243 -15.32579 -15.13009 -14.49303 -14.00001 -13.62277 -13.44539 -13.26589 -12.66115 -12.49555 -12.31448 -12.23676 -11.98214 -11.68574 -11.49407 -11.40052 -11.23241 -10.97301 -10.89977 -10.58532 -10.56416 -10.28960 -10.13697 -9.75465 -9.63817 -9.13874 -8.64958 -8.56128 -8.12161 -6.06692 -4.06796 3.23183 3.24649 3.31296 3.36103 3.63059 4.01147 4.19003 4.37443 4.64419 4.87180 5.04563 5.06763 5.11909 5.23221 5.24027 5.29693 5.51128 5.57350 5.65129 5.68181 5.71939 5.83337 5.87213 5.94492 5.99893 6.05536 6.10308 6.18579 6.21190 6.25185 6.34011 6.39525 6.50662 6.55576 6.83610 7.19260 7.58719 8.34610 8.54771 9.05782 9.13086 9.52051 11.06321 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.006969 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.066173 B = 4016.959061 C = 4567.324518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.006 3.994 3 H 0.041 0.959 4 C -0.503 4.503 5 H 0.085 0.915 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.563 3.437 13 O -0.535 6.535 14 N -0.646 5.646 15 C 0.109 3.891 16 C -0.098 4.098 17 C -0.123 4.123 18 C -0.130 4.130 19 C 0.166 3.834 20 H 0.079 0.921 21 C -0.157 4.157 22 C -0.171 4.171 23 C -0.168 4.168 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.265 0.735 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 7.483 -18.472 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.016 4.016 3 H 0.059 0.941 4 C -0.541 4.541 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.355 3.645 13 O -0.409 6.409 14 N -0.383 5.383 15 C -0.015 4.015 16 C -0.099 4.099 17 C -0.180 4.180 18 C -0.188 4.188 19 C 0.062 3.938 20 H 0.097 0.903 21 C -0.176 4.176 22 C -0.209 4.209 23 C -0.205 4.205 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.188 6.656 -18.000 19.228 hybrid contribution -0.483 0.869 0.415 1.078 sum 0.705 7.525 -17.584 19.140 Atomic orbital electron populations 1.22042 0.97034 1.01785 0.98928 1.19243 0.93374 0.97093 0.91902 0.94093 1.20820 1.32325 1.13622 0.87336 0.89679 1.24947 0.95761 0.96658 0.95646 1.69881 1.45395 1.40176 0.97869 0.86881 0.80793 0.83727 0.77012 1.20424 1.22235 1.19238 1.20955 0.75145 0.87066 0.81304 1.90580 1.53526 1.14824 1.81978 1.49981 1.63209 1.10164 1.14914 1.23014 1.01728 0.85527 0.91241 1.22269 0.96458 0.96587 0.94614 1.21464 0.93716 1.01480 1.01321 1.21637 0.99685 0.99032 0.98437 1.21910 0.90361 0.98278 0.83276 0.90269 1.22398 0.92653 0.96660 1.05904 1.22902 1.01989 1.02669 0.93325 1.22901 1.01444 1.00895 0.95279 0.92081 0.93383 0.94949 0.92509 0.90757 0.90383 0.92066 0.92270 0.91965 0.91967 0.92142 0.92391 0.87388 0.88916 0.88855 0.88835 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.63 37.16 0.32 -2.81 16 2 C 0.01 0.14 2.11 -92.93 -0.20 -0.06 16 3 H 0.04 0.97 6.94 -51.93 -0.36 0.61 16 4 C -0.50 -14.94 8.90 -34.44 -0.31 -15.24 16 5 H 0.09 2.86 7.47 -52.48 -0.39 2.47 16 6 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 8 Si 0.89 21.80 24.35 -169.99 -4.14 17.66 16 9 H -0.28 -6.64 6.89 56.52 0.39 -6.25 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 12 C 0.56 13.19 7.08 -10.99 -0.08 13.11 16 13 O -0.53 -14.47 16.86 5.55 0.09 -14.38 16 14 N -0.65 -11.71 3.26 -177.19 -0.58 -12.29 16 15 C 0.11 1.50 7.02 -8.50 -0.06 1.44 16 16 C -0.10 -1.12 1.50 -153.86 -0.23 -1.35 16 17 C -0.12 -1.32 9.22 37.16 0.34 -0.98 16 18 C -0.13 -1.12 8.61 37.16 0.32 -0.80 16 19 C 0.17 2.41 3.94 -72.26 -0.28 2.13 16 20 H 0.08 1.24 8.10 -51.93 -0.42 0.81 16 21 C -0.16 -2.04 4.29 -90.62 -0.39 -2.42 16 22 C -0.17 -1.89 10.24 -26.74 -0.27 -2.17 16 23 C -0.17 -2.41 10.25 -26.74 -0.27 -2.68 16 24 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.05 1.08 3.32 -51.93 -0.17 0.91 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.08 0.99 7.49 -51.93 -0.39 0.60 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 33 H 0.06 0.52 6.24 -51.93 -0.32 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.11 1.28 6.24 -51.92 -0.32 0.95 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -33.70 317.79 -6.89 -40.60 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.62 Total: 0.66 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.21 Total: -9.82 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.20 Total: -39.50 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.70 -6.89 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597669624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.620 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds