Wall clock time and date at job start Mon Mar 30 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46843 * 2 1 4 4 C 1.50694 * 109.47410 * 120.00031 * 2 1 3 5 5 H 1.08008 * 119.99965 * 119.99738 * 4 2 1 6 6 C 1.37873 * 120.00291 * 300.00016 * 4 2 1 7 7 N 1.31516 * 120.00276 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99830 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46948 * 90.00343 * 8 6 4 10 10 H 1.48500 * 109.46941 * 210.00033 * 8 6 4 11 11 H 1.48492 * 109.47056 * 330.00222 * 8 6 4 12 12 C 1.50701 * 109.46564 * 240.00431 * 2 1 3 13 13 O 1.21288 * 119.99716 * 273.85262 * 12 2 1 14 14 N 1.34775 * 120.00116 * 94.13336 * 12 2 1 15 15 C 1.47065 * 136.05614 * 354.74106 * 14 12 2 16 16 C 1.53503 * 87.98165 * 207.08225 * 15 14 12 17 17 C 1.53011 * 114.20339 * 87.52046 * 16 15 14 18 18 C 1.53000 * 114.20564 * 220.33958 * 16 15 14 19 19 C 1.47068 * 136.05675 * 174.37176 * 14 12 2 20 20 H 1.08995 * 113.47000 * 38.12562 * 19 14 12 21 21 C 1.53003 * 113.46454 * 267.69433 * 19 14 12 22 22 C 1.52999 * 117.49915 * 148.12640 * 21 19 14 23 23 C 1.52993 * 59.99877 * 252.50700 * 22 21 19 24 24 H 1.09002 * 109.47439 * 182.17140 * 1 2 3 25 25 H 1.09003 * 109.46706 * 302.16377 * 1 2 3 26 26 H 1.08992 * 109.47666 * 62.16527 * 1 2 3 27 27 H 0.97000 * 120.00276 * 180.02562 * 7 6 4 28 28 H 1.09002 * 113.46867 * 321.85673 * 15 14 12 29 29 H 1.08995 * 113.47147 * 92.25062 * 15 14 12 30 30 H 1.08997 * 109.46954 * 79.50376 * 17 16 15 31 31 H 1.08997 * 109.46608 * 199.50341 * 17 16 15 32 32 H 1.08993 * 109.46781 * 319.49926 * 17 16 15 33 33 H 1.08995 * 109.46915 * 40.49973 * 18 16 15 34 34 H 1.09002 * 109.46862 * 160.49770 * 18 16 15 35 35 H 1.08998 * 109.47515 * 280.49669 * 18 16 15 36 36 H 1.09008 * 115.54876 * 293.83393 * 21 19 14 37 37 H 1.09001 * 117.49864 * 359.97438 * 22 21 19 38 38 H 1.09006 * 117.49692 * 145.01537 * 22 21 19 39 39 H 1.09007 * 117.50097 * 252.50702 * 23 22 21 40 40 H 1.09002 * 117.51562 * 107.48277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1383 -0.8591 3.5565 8 14 0.6260 1.2798 2.6542 9 1 -0.8019 0.8744 2.6995 10 1 0.9774 1.9953 3.9071 11 1 0.8492 2.1773 1.4924 12 6 2.0322 -0.7103 -1.2306 13 8 2.1677 -1.9156 -1.2221 14 7 2.3361 -0.0058 -2.3386 15 6 2.2281 1.3980 -2.7635 16 6 2.1422 0.8963 -4.2117 17 6 0.7235 0.5603 -4.6761 18 6 2.9262 1.7430 -5.2165 19 6 2.9276 -0.3012 -3.6523 20 1 2.6126 -1.2597 -4.0645 21 6 4.4448 -0.1081 -3.6946 22 6 5.2470 -1.0177 -4.6273 23 6 5.3154 -1.2235 -3.1128 24 1 -0.3634 -1.0269 0.0389 25 1 -0.3633 0.5471 0.8700 26 1 -0.3634 0.4798 -0.9087 27 1 1.9037 -0.5279 4.4375 28 1 1.3170 1.8871 -2.4189 29 1 3.1242 1.9837 -2.5586 30 1 0.2005 1.4793 -4.9403 31 1 0.7716 -0.0936 -5.5468 32 1 0.1881 0.0557 -3.8719 33 1 3.8793 2.0377 -4.7775 34 1 3.1069 1.1602 -6.1197 35 1 2.3509 2.6340 -5.4679 36 1 4.7918 0.9178 -3.5705 37 1 4.6939 -1.7540 -5.2105 38 1 6.1219 -0.5903 -5.1173 39 1 6.2355 -0.9316 -2.6063 40 1 4.8074 -2.0948 -2.6996 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597669624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:19 Heat of formation + Delta-G solvation = 0.058521 kcal Electronic energy + Delta-G solvation = -19464.047081 eV Core-core repulsion = 16666.028131 eV Total energy + Delta-G solvation = -2798.018950 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03491 -39.48283 -37.27468 -35.81146 -33.65753 -32.94177 -28.55770 -27.92595 -27.25980 -27.11687 -24.21312 -23.24486 -22.24034 -20.35827 -18.98578 -18.88597 -17.76780 -17.28448 -16.60427 -16.30209 -16.08877 -15.38468 -14.97743 -14.96159 -14.49327 -14.41005 -14.13667 -13.78886 -13.29629 -12.99188 -12.95574 -12.85430 -12.62717 -12.56698 -12.45976 -12.33293 -12.08126 -11.82961 -11.58439 -11.52366 -11.35488 -11.27269 -10.83255 -10.77809 -10.36674 -9.58352 -8.34220 -6.42852 1.29192 1.35059 1.47151 1.71248 2.01246 2.29073 2.91718 2.99231 3.15124 3.60301 3.79349 3.93816 4.05478 4.08143 4.20707 4.23265 4.33335 4.37238 4.53179 4.60399 4.64774 4.73310 4.74125 4.80304 4.87913 4.90469 4.97210 5.05493 5.12614 5.15357 5.20544 5.21104 5.27132 5.34931 5.38437 5.48839 5.59719 6.20599 6.60839 6.88942 7.18586 7.40878 8.83735 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.006969 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.066173 B = 4016.959061 C = 4567.324518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.005 3.995 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.018 0.982 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.961 3.039 9 H -0.261 1.261 10 H -0.292 1.292 11 H -0.230 1.230 12 C 0.556 3.444 13 O -0.594 6.594 14 N -0.650 5.650 15 C 0.098 3.902 16 C -0.072 4.072 17 C -0.124 4.124 18 C -0.125 4.125 19 C 0.153 3.847 20 H 0.058 0.942 21 C -0.156 4.156 22 C -0.133 4.133 23 C -0.204 4.204 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.270 0.730 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 11.690 -21.541 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.036 0.964 6 C -0.187 4.187 7 N -0.589 5.589 8 Si 0.785 3.215 9 H -0.187 1.187 10 H -0.219 1.219 11 H -0.154 1.154 12 C 0.348 3.652 13 O -0.474 6.474 14 N -0.384 5.384 15 C -0.024 4.024 16 C -0.073 4.073 17 C -0.181 4.181 18 C -0.182 4.182 19 C 0.050 3.950 20 H 0.077 0.923 21 C -0.175 4.175 22 C -0.170 4.170 23 C -0.242 4.242 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.299 10.910 -21.145 23.796 hybrid contribution -0.107 -0.552 1.320 1.434 sum 0.192 10.357 -19.826 22.369 Atomic orbital electron populations 1.21937 0.94857 1.01229 1.01185 1.19149 0.95114 0.96988 0.90392 0.92271 1.20936 1.32199 1.12346 0.90502 0.96391 1.26025 0.97253 1.00874 0.94553 1.70066 1.47290 1.42730 0.98780 0.85684 0.78691 0.78850 0.78320 1.18724 1.21886 1.15355 1.20713 0.75447 0.86461 0.82600 1.90541 1.56310 1.17266 1.83327 1.49939 1.61591 1.12605 1.14305 1.23471 1.03253 0.83174 0.92511 1.22208 0.96637 0.94270 0.94135 1.21517 0.93147 1.02762 1.00703 1.21646 0.99697 0.99243 0.97662 1.22319 0.92007 0.99245 0.81430 0.92331 1.22493 0.91323 0.97340 1.06360 1.23005 1.02104 1.01109 0.90829 1.22813 1.02110 1.00628 0.98639 0.94087 0.93020 0.90655 0.92126 0.89551 0.88521 0.89359 0.91212 0.94802 0.91289 0.90962 0.90247 0.85183 0.88514 0.85541 0.88391 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.63 71.98 0.62 -5.19 16 2 C 0.01 0.26 2.11 -12.29 -0.03 0.23 16 3 H 0.06 2.70 6.94 -2.39 -0.02 2.69 16 4 C -0.52 -32.72 8.90 25.60 0.23 -32.50 16 5 H 0.02 1.32 7.47 -2.91 -0.02 1.29 16 6 C 0.01 0.60 5.45 84.65 0.46 1.06 16 7 N -0.95 -62.10 13.96 21.45 0.30 -61.80 16 8 Si 0.96 44.23 24.35 68.60 1.67 45.90 16 9 H -0.26 -11.37 6.89 99.48 0.69 -10.69 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.23 -9.21 6.53 99.48 0.65 -8.57 16 12 C 0.56 27.06 7.08 87.66 0.62 27.68 16 13 O -0.59 -34.89 16.86 -3.05 -0.05 -34.94 16 14 N -0.65 -23.32 3.26 -832.89 -2.72 -26.04 16 15 C 0.10 2.37 7.02 83.18 0.58 2.96 16 16 C -0.07 -1.38 1.50 -51.76 -0.08 -1.46 16 17 C -0.12 -2.26 9.22 71.99 0.66 -1.59 16 18 C -0.13 -1.46 8.61 71.98 0.62 -0.84 16 19 C 0.15 4.29 3.94 41.88 0.16 4.46 16 20 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 21 C -0.16 -3.79 4.29 -10.80 -0.05 -3.83 16 22 C -0.13 -2.65 10.24 30.59 0.31 -2.33 16 23 C -0.20 -6.05 10.25 30.59 0.31 -5.73 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 2.17 3.32 -2.39 -0.01 2.17 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 28 H 0.09 1.92 8.12 -2.39 -0.02 1.90 16 29 H 0.10 2.04 7.49 -2.39 -0.02 2.02 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.03 0.81 7.94 -2.39 -0.02 0.79 16 33 H 0.07 0.76 6.24 -2.39 -0.01 0.74 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 36 H 0.13 2.60 6.24 -2.38 -0.01 2.58 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -82.39 317.79 4.56 -77.83 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.93 Total: 16.15 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 4.44 Total: -17.09 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -2.42 Total: -87.84 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.05 Total: -34.94 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.90 kcal Total: -82.39 4.56 -77.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597669624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.887 kcal (2) G-P(sol) polarization free energy of solvation -82.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds