Wall clock time and date at job start Mon Mar 30 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50704 * 109.47064 * 120.00200 * 2 1 3 5 5 H 1.08000 * 119.99801 * 119.99855 * 4 2 1 6 6 C 1.37878 * 119.99961 * 300.00140 * 4 2 1 7 7 N 1.31507 * 119.99729 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99892 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47086 * 90.00348 * 8 6 4 10 10 H 1.48505 * 109.47072 * 210.00290 * 8 6 4 11 11 H 1.48506 * 109.47029 * 329.99919 * 8 6 4 12 12 C 1.50703 * 109.47057 * 239.99945 * 2 1 3 13 13 O 1.21282 * 119.99948 * 335.48993 * 12 2 1 14 14 N 1.34774 * 119.99668 * 155.49110 * 12 2 1 15 15 C 1.46920 * 120.63466 * 355.12660 * 14 12 2 16 16 C 1.53620 * 108.54570 * 126.36933 * 15 14 12 17 17 C 1.53040 * 109.24255 * 54.85736 * 16 15 14 18 18 C 1.52999 * 109.45007 * 178.49742 * 17 16 15 19 19 C 1.52996 * 117.50164 * 248.80729 * 18 17 16 20 20 C 1.53000 * 117.50081 * 180.14705 * 18 17 16 21 21 C 1.53039 * 109.53816 * 298.51323 * 17 16 15 22 22 C 1.46927 * 120.62825 * 175.40635 * 14 12 2 23 23 H 1.09001 * 109.47719 * 185.18358 * 1 2 3 24 24 H 1.09002 * 109.47410 * 305.18653 * 1 2 3 25 25 H 1.08999 * 109.47268 * 65.18126 * 1 2 3 26 26 H 0.97013 * 119.99994 * 179.97438 * 7 6 4 27 27 H 1.09008 * 109.58641 * 246.20359 * 15 14 12 28 28 H 1.09003 * 109.58463 * 6.62541 * 15 14 12 29 29 H 1.08999 * 109.63616 * 294.86458 * 16 15 14 30 30 H 1.09003 * 109.43101 * 174.72643 * 16 15 14 31 31 H 1.08997 * 109.46248 * 58.53115 * 17 16 15 32 32 H 1.08997 * 115.54954 * 34.48016 * 18 17 16 33 33 H 1.09003 * 117.49767 * 359.97438 * 19 18 17 34 34 H 1.08997 * 117.50451 * 145.02195 * 19 18 17 35 35 H 1.09002 * 117.50108 * 214.98133 * 20 18 17 36 36 H 1.09003 * 117.49534 * 0.02562 * 20 18 17 37 37 H 1.09006 * 109.49588 * 301.41153 * 21 17 16 38 38 H 1.09005 * 109.49868 * 181.31740 * 21 17 16 39 39 H 1.09002 * 109.59129 * 353.37370 * 22 14 12 40 40 H 1.09008 * 109.58884 * 113.79474 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4828 7 7 2.1379 -0.8592 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 8 1.3334 -1.5329 -1.7836 14 7 3.2582 -0.4317 -1.7162 15 6 4.0737 0.6362 -1.1222 16 6 5.4450 0.0533 -0.7484 17 6 6.0689 -0.6002 -1.9836 18 6 7.4514 -1.1496 -1.6259 19 6 8.6681 -0.4567 -2.2425 20 6 8.2449 -1.8427 -2.7353 21 6 5.1741 -1.7450 -2.4641 22 6 3.8020 -1.1862 -2.8537 23 1 -0.3634 -1.0234 0.0928 24 1 -0.3634 0.5922 0.8399 25 1 -0.3634 0.4314 -0.9327 26 1 1.9039 -0.5276 4.4376 27 1 4.2010 1.4432 -1.8440 28 1 3.5811 1.0176 -0.2278 29 1 5.3240 -0.6934 0.0363 30 1 6.0944 0.8534 -0.3929 31 1 6.1669 0.1413 -2.7765 32 1 7.5543 -1.5409 -0.6138 33 1 8.4838 0.3903 -2.9034 34 1 9.5717 -0.3925 -1.6363 35 1 8.8701 -2.6898 -2.4530 36 1 7.7822 -1.9070 -3.7202 37 1 5.0556 -2.4748 -1.6632 38 1 5.6306 -2.2250 -3.3297 39 1 3.1300 -2.0077 -3.1022 40 1 3.9075 -0.5249 -3.7138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:47 Heat of formation + Delta-G solvation = -21.660674 kcal Electronic energy + Delta-G solvation = -19314.442381 eV Core-core repulsion = 16515.481616 eV Total energy + Delta-G solvation = -2798.960765 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71286 -38.09857 -35.84986 -33.90215 -31.92891 -31.26203 -30.50390 -25.72506 -25.04473 -23.59832 -22.44773 -22.03080 -20.84929 -19.79471 -18.19490 -16.84265 -16.52285 -15.42316 -15.28742 -14.78079 -14.46166 -14.24718 -13.80543 -13.31994 -12.99504 -12.91336 -12.47510 -12.37237 -12.12768 -11.89143 -11.59765 -11.53354 -11.06140 -10.86920 -10.81775 -10.69063 -10.63787 -10.55724 -10.18830 -9.93019 -9.71768 -9.63118 -9.22296 -8.65702 -8.62246 -8.02417 -6.16693 -4.18771 3.23662 3.31480 3.34406 3.58326 3.73228 3.78547 4.32147 4.59718 4.86588 4.87673 5.05909 5.15192 5.22487 5.37235 5.45696 5.55182 5.57718 5.61126 5.70260 5.81167 5.83934 5.93221 6.05415 6.09970 6.14485 6.22980 6.27127 6.31844 6.40203 6.42428 6.52263 6.61380 6.71981 6.84955 7.15396 7.31938 7.54664 8.12155 8.37461 8.83839 9.10529 9.41909 10.95491 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.006442 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.715259 B = 4345.494554 C = 4924.178773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.006 4.006 3 H 0.046 0.954 4 C -0.507 4.507 5 H 0.076 0.924 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.266 1.266 12 C 0.541 3.459 13 O -0.563 6.563 14 N -0.616 5.616 15 C 0.110 3.890 16 C -0.125 4.125 17 C -0.054 4.054 18 C -0.142 4.142 19 C -0.182 4.182 20 C -0.183 4.183 21 C -0.125 4.125 22 C 0.112 3.888 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.032 0.968 26 H 0.266 0.734 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.141 3.678 -10.851 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.028 4.028 3 H 0.064 0.936 4 C -0.545 4.545 5 H 0.094 0.906 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.191 1.191 12 C 0.333 3.667 13 O -0.441 6.441 14 N -0.350 5.350 15 C -0.013 4.013 16 C -0.163 4.163 17 C -0.073 4.073 18 C -0.160 4.160 19 C -0.219 4.219 20 C -0.219 4.219 21 C -0.163 4.163 22 C -0.011 4.011 23 H 0.082 0.918 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.761 3.229 -10.940 15.013 hybrid contribution -0.384 0.731 0.306 0.880 sum 9.377 3.960 -10.634 14.720 Atomic orbital electron populations 1.21940 0.96933 1.01921 0.98356 1.19389 0.93790 0.97030 0.92552 0.93606 1.20528 1.32778 1.13845 0.87389 0.90577 1.24915 0.95373 0.96699 0.95546 1.69873 1.45004 1.40067 0.97983 0.86846 0.80992 0.83487 0.76916 1.20333 1.22322 1.19128 1.21211 0.79588 0.81707 0.84200 1.90539 1.56606 1.35915 1.61062 1.48072 1.17124 1.36570 1.33281 1.21822 0.91494 0.88829 0.99161 1.21981 0.95703 1.01020 0.97604 1.20733 0.91916 0.96756 0.97893 1.22390 0.92024 1.03542 0.98059 1.22995 0.98871 0.95934 1.04103 1.22922 1.04075 0.95715 0.99234 1.21926 0.94875 0.98050 1.01440 1.21438 0.94694 0.96516 0.88476 0.91814 0.94113 0.94902 0.92374 0.92772 0.87768 0.90383 0.91206 0.91527 0.87745 0.89028 0.89178 0.89154 0.88943 0.91233 0.91475 0.89492 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.04 37.15 0.30 -2.79 16 2 C -0.01 -0.15 1.41 -92.92 -0.13 -0.28 16 3 H 0.05 1.03 5.35 -51.93 -0.28 0.75 16 4 C -0.51 -13.86 8.95 -34.44 -0.31 -14.17 16 5 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 8 Si 0.89 21.14 24.32 -169.99 -4.13 17.01 16 9 H -0.28 -6.55 6.91 56.52 0.39 -6.16 16 10 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 12 C 0.54 12.35 6.74 -10.99 -0.07 12.27 16 13 O -0.56 -14.21 15.62 5.56 0.09 -14.12 16 14 N -0.62 -11.49 2.97 -172.50 -0.51 -12.00 16 15 C 0.11 1.77 6.30 -3.49 -0.02 1.75 16 16 C -0.12 -1.81 5.36 -26.39 -0.14 -1.95 16 17 C -0.05 -0.68 2.30 -90.58 -0.21 -0.89 16 18 C -0.14 -1.61 5.14 -90.62 -0.47 -2.08 16 19 C -0.18 -1.76 10.18 -26.70 -0.27 -2.03 16 20 C -0.18 -1.80 9.72 -26.70 -0.26 -2.05 16 21 C -0.12 -1.69 5.22 -26.61 -0.14 -1.83 16 22 C 0.11 1.76 6.42 -3.71 -0.02 1.73 16 23 H 0.06 1.54 8.04 -51.93 -0.42 1.12 16 24 H 0.04 0.93 3.42 -51.93 -0.18 0.75 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.27 7.38 8.31 -40.81 -0.34 7.04 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.10 1.88 5.35 -51.93 -0.28 1.60 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 32 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 33 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.87 7.61 -51.93 -0.39 0.47 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.77 7.25 -51.93 -0.38 0.40 16 39 H 0.09 1.51 7.03 -51.93 -0.37 1.15 16 40 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -30.63 308.19 -7.50 -38.13 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.52 Total: 2.18 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.84 Total: -10.26 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.26 Total: -37.59 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.13 Total: 17.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.63 -7.50 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.468 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds