Wall clock time and date at job start Mon Mar 30 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50704 * 109.47064 * 120.00200 * 2 1 3 5 5 H 1.08000 * 119.99801 * 119.99855 * 4 2 1 6 6 C 1.37878 * 119.99961 * 300.00140 * 4 2 1 7 7 N 1.31507 * 119.99729 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99892 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47086 * 90.00348 * 8 6 4 10 10 H 1.48505 * 109.47072 * 210.00290 * 8 6 4 11 11 H 1.48506 * 109.47029 * 329.99919 * 8 6 4 12 12 C 1.50703 * 109.47057 * 239.99945 * 2 1 3 13 13 O 1.21282 * 119.99948 * 335.48993 * 12 2 1 14 14 N 1.34774 * 119.99668 * 155.49110 * 12 2 1 15 15 C 1.46920 * 120.63466 * 355.12660 * 14 12 2 16 16 C 1.53620 * 108.54570 * 126.36933 * 15 14 12 17 17 C 1.53040 * 109.24255 * 54.85736 * 16 15 14 18 18 C 1.52999 * 109.45007 * 178.49742 * 17 16 15 19 19 C 1.52996 * 117.50164 * 248.80729 * 18 17 16 20 20 C 1.53000 * 117.50081 * 180.14705 * 18 17 16 21 21 C 1.53039 * 109.53816 * 298.51323 * 17 16 15 22 22 C 1.46927 * 120.62825 * 175.40635 * 14 12 2 23 23 H 1.09001 * 109.47719 * 185.18358 * 1 2 3 24 24 H 1.09002 * 109.47410 * 305.18653 * 1 2 3 25 25 H 1.08999 * 109.47268 * 65.18126 * 1 2 3 26 26 H 0.97013 * 119.99994 * 179.97438 * 7 6 4 27 27 H 1.09008 * 109.58641 * 246.20359 * 15 14 12 28 28 H 1.09003 * 109.58463 * 6.62541 * 15 14 12 29 29 H 1.08999 * 109.63616 * 294.86458 * 16 15 14 30 30 H 1.09003 * 109.43101 * 174.72643 * 16 15 14 31 31 H 1.08997 * 109.46248 * 58.53115 * 17 16 15 32 32 H 1.08997 * 115.54954 * 34.48016 * 18 17 16 33 33 H 1.09003 * 117.49767 * 359.97438 * 19 18 17 34 34 H 1.08997 * 117.50451 * 145.02195 * 19 18 17 35 35 H 1.09002 * 117.50108 * 214.98133 * 20 18 17 36 36 H 1.09003 * 117.49534 * 0.02562 * 20 18 17 37 37 H 1.09006 * 109.49588 * 301.41153 * 21 17 16 38 38 H 1.09005 * 109.49868 * 181.31740 * 21 17 16 39 39 H 1.09002 * 109.59129 * 353.37370 * 22 14 12 40 40 H 1.09008 * 109.58884 * 113.79474 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4828 7 7 2.1379 -0.8592 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 8 1.3334 -1.5329 -1.7836 14 7 3.2582 -0.4317 -1.7162 15 6 4.0737 0.6362 -1.1222 16 6 5.4450 0.0533 -0.7484 17 6 6.0689 -0.6002 -1.9836 18 6 7.4514 -1.1496 -1.6259 19 6 8.6681 -0.4567 -2.2425 20 6 8.2449 -1.8427 -2.7353 21 6 5.1741 -1.7450 -2.4641 22 6 3.8020 -1.1862 -2.8537 23 1 -0.3634 -1.0234 0.0928 24 1 -0.3634 0.5922 0.8399 25 1 -0.3634 0.4314 -0.9327 26 1 1.9039 -0.5276 4.4376 27 1 4.2010 1.4432 -1.8440 28 1 3.5811 1.0176 -0.2278 29 1 5.3240 -0.6934 0.0363 30 1 6.0944 0.8534 -0.3929 31 1 6.1669 0.1413 -2.7765 32 1 7.5543 -1.5409 -0.6138 33 1 8.4838 0.3903 -2.9034 34 1 9.5717 -0.3925 -1.6363 35 1 8.8701 -2.6898 -2.4530 36 1 7.7822 -1.9070 -3.7202 37 1 5.0556 -2.4748 -1.6632 38 1 5.6306 -2.2250 -3.3297 39 1 3.1300 -2.0077 -3.1022 40 1 3.9075 -0.5249 -3.7138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597684304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:47 Heat of formation + Delta-G solvation = -40.237698 kcal Electronic energy + Delta-G solvation = -19315.247941 eV Core-core repulsion = 16515.481616 eV Total energy + Delta-G solvation = -2799.766325 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.20953 -39.33545 -37.10642 -35.89416 -33.51942 -32.92774 -31.88098 -27.31449 -26.84103 -25.00999 -23.80366 -22.97012 -22.07286 -20.89363 -19.78721 -18.85966 -18.23901 -17.01370 -16.37970 -16.32699 -15.81915 -15.50990 -15.19466 -14.93103 -14.56894 -14.47331 -14.13034 -13.62691 -13.54249 -13.48213 -13.21274 -12.77632 -12.73012 -12.34780 -12.17307 -12.05785 -11.86433 -11.70763 -11.60300 -11.48131 -11.30682 -10.96293 -10.78491 -10.67034 -10.39670 -9.50451 -8.32868 -6.40853 1.35573 1.37177 1.49277 1.81688 2.24881 2.30912 2.96140 3.01837 3.65366 3.76315 3.88471 4.02793 4.13218 4.21944 4.32534 4.35659 4.41266 4.45088 4.53259 4.62614 4.66558 4.71934 4.81557 4.84698 4.87607 4.97327 5.00678 5.06423 5.12867 5.19362 5.23910 5.31614 5.34125 5.39374 5.50685 5.58563 5.78353 6.14960 6.51345 6.62446 7.22732 7.37542 8.83273 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.006442 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.715259 B = 4345.494554 C = 4924.178773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 H 0.069 0.931 4 C -0.507 4.507 5 H 0.024 0.976 6 C 0.024 3.976 7 N -0.941 5.941 8 Si 0.948 3.052 9 H -0.271 1.271 10 H -0.292 1.292 11 H -0.234 1.234 12 C 0.531 3.469 13 O -0.598 6.598 14 N -0.612 5.612 15 C 0.104 3.896 16 C -0.120 4.120 17 C -0.044 4.044 18 C -0.163 4.163 19 C -0.168 4.168 20 C -0.177 4.177 21 C -0.118 4.118 22 C 0.107 3.893 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.270 0.730 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.015 6.275 -12.965 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 H 0.086 0.914 4 C -0.545 4.545 5 H 0.042 0.958 6 C -0.174 4.174 7 N -0.580 5.580 8 Si 0.774 3.226 9 H -0.197 1.197 10 H -0.219 1.219 11 H -0.158 1.158 12 C 0.322 3.678 13 O -0.480 6.480 14 N -0.344 5.344 15 C -0.018 4.018 16 C -0.159 4.159 17 C -0.062 4.062 18 C -0.181 4.181 19 C -0.205 4.205 20 C -0.214 4.214 21 C -0.156 4.156 22 C -0.015 4.015 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.683 5.840 -13.081 17.870 hybrid contribution -0.546 -0.178 0.960 1.119 sum 10.136 5.662 -12.121 16.784 Atomic orbital electron populations 1.21882 0.96187 1.00935 0.99953 1.19355 0.94461 0.97738 0.91350 0.91363 1.20538 1.32029 1.12448 0.89525 0.95759 1.25774 0.96697 1.00135 0.94813 1.70020 1.46881 1.42319 0.98740 0.85854 0.78885 0.79771 0.78114 1.19726 1.21934 1.15769 1.21098 0.80996 0.81546 0.84148 1.90511 1.58052 1.37308 1.62085 1.48157 1.15962 1.36797 1.33508 1.22042 0.91347 0.89097 0.99329 1.21925 0.95585 1.00688 0.97660 1.20650 0.91893 0.96476 0.97223 1.22249 0.92260 1.05694 0.97930 1.23082 0.97775 0.96160 1.03464 1.23011 1.03325 0.96199 0.98835 1.21886 0.94270 0.97986 1.01461 1.21679 0.94945 0.96384 0.88450 0.94050 0.93514 0.92303 0.92134 0.88669 0.90025 0.94578 0.89026 0.88994 0.89622 0.87680 0.88536 0.88792 0.87893 0.94594 0.88604 0.91738 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.04 71.98 0.58 -5.38 16 2 C -0.01 -0.37 1.41 -12.29 -0.02 -0.38 16 3 H 0.07 2.93 5.35 -2.39 -0.01 2.92 16 4 C -0.51 -28.79 8.95 25.60 0.23 -28.56 16 5 H 0.02 1.58 7.98 -2.91 -0.02 1.56 16 6 C 0.02 1.38 5.45 84.66 0.46 1.84 16 7 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 8 Si 0.95 42.80 24.32 68.60 1.67 44.46 16 9 H -0.27 -11.99 6.91 99.48 0.69 -11.30 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.23 -9.35 6.53 99.48 0.65 -8.70 16 12 C 0.53 24.48 6.74 87.66 0.59 25.07 16 13 O -0.60 -30.85 15.62 -3.04 -0.05 -30.90 16 14 N -0.61 -22.47 2.97 -818.06 -2.43 -24.90 16 15 C 0.10 3.17 6.30 86.51 0.54 3.72 16 16 C -0.12 -3.39 5.36 30.82 0.17 -3.23 16 17 C -0.04 -1.00 2.30 -10.77 -0.02 -1.03 16 18 C -0.16 -3.43 5.14 -10.80 -0.06 -3.48 16 19 C -0.17 -2.71 10.18 30.62 0.31 -2.40 16 20 C -0.18 -3.00 9.72 30.62 0.30 -2.70 16 21 C -0.12 -3.07 5.22 30.67 0.16 -2.91 16 22 C 0.11 3.24 6.42 86.36 0.55 3.79 16 23 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 24 H 0.05 2.02 3.42 -2.39 -0.01 2.01 16 25 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 27 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.08 2.87 5.35 -2.39 -0.01 2.86 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 1.70 7.90 -2.39 -0.02 1.68 16 32 H 0.09 2.11 8.11 -2.39 -0.02 2.09 16 33 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.55 7.61 -2.39 -0.02 1.53 16 37 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.10 1.96 7.25 -2.38 -0.02 1.94 16 39 H 0.06 2.25 7.03 -2.39 -0.02 2.23 16 40 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -69.80 308.19 4.22 -65.57 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.93 Total: 18.67 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.80 Total: -15.64 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.13 Total: -82.17 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.05 Total: -30.90 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.67 Total: 44.46 kcal Total: -69.80 4.22 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.336 kcal (2) G-P(sol) polarization free energy of solvation -69.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds