Wall clock time and date at job start Mon Mar 30 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47464 * 2 1 4 4 C 1.50696 * 109.47163 * 120.00280 * 2 1 3 5 5 H 1.08003 * 120.00443 * 119.99834 * 4 2 1 6 6 C 1.37882 * 119.99823 * 299.99688 * 4 2 1 7 7 N 1.31510 * 120.00039 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47005 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47403 * 300.00096 * 8 6 4 11 11 H 1.48501 * 109.47116 * 60.00396 * 8 6 4 12 12 C 1.50704 * 109.47082 * 239.99933 * 2 1 3 13 13 O 1.21283 * 120.00035 * 240.00045 * 12 2 1 14 14 N 1.34774 * 120.00098 * 60.00185 * 12 2 1 15 15 C 1.46495 * 120.00197 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.46994 * 17.08959 * 15 14 12 17 17 C 1.53003 * 109.47019 * 257.09000 * 15 14 12 18 18 C 1.52998 * 117.49787 * 128.62344 * 17 15 14 19 19 C 1.52999 * 60.00031 * 252.50741 * 18 17 15 20 20 C 1.52998 * 109.47465 * 137.08985 * 15 14 12 21 21 C 1.53784 * 113.61391 * 279.93329 * 20 15 14 22 22 C 1.53782 * 87.07711 * 220.01566 * 21 20 15 23 23 C 1.53774 * 113.61845 * 182.43025 * 20 15 14 24 24 H 1.09001 * 109.47464 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47162 * 300.00099 * 1 2 3 26 26 H 1.09004 * 109.47147 * 59.99921 * 1 2 3 27 27 H 0.96995 * 119.99978 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99764 * 359.97438 * 14 12 2 29 29 H 1.09005 * 115.54508 * 274.32673 * 17 15 14 30 30 H 1.08994 * 117.50027 * 359.97438 * 18 17 15 31 31 H 1.09004 * 117.49940 * 145.02184 * 18 17 15 32 32 H 1.08994 * 117.50076 * 252.51130 * 19 18 17 33 33 H 1.08994 * 117.49967 * 107.48725 * 19 18 17 34 34 H 1.09004 * 112.85062 * 51.22781 * 20 15 14 35 35 H 1.08998 * 113.61080 * 334.56071 * 21 20 15 36 36 H 1.08995 * 113.62059 * 105.46590 * 21 20 15 37 37 H 1.09001 * 113.61546 * 270.87448 * 22 21 20 38 38 H 1.09006 * 113.61252 * 139.97993 * 22 21 20 39 39 H 1.08999 * 113.61602 * 254.52674 * 23 20 15 40 40 H 1.08996 * 113.61750 * 25.34583 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8270 -0.4199 5.2205 10 1 1.8258 -2.5203 4.0077 11 1 3.8063 -1.1210 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 1 2.5318 -1.9415 -3.3802 17 6 3.3609 -0.1552 -4.2534 18 6 4.6508 -0.9225 -4.5508 19 6 4.5970 0.0578 -3.3773 20 6 1.0645 -1.0437 -4.6770 21 6 0.0751 -2.1859 -4.3916 22 6 0.0586 -2.4448 -5.9073 23 6 1.4577 -1.8082 -5.9519 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7088 1.1612 3.4844 28 1 1.1488 0.5385 -2.5436 29 1 3.0837 0.6477 -4.9365 30 1 4.6687 -1.9868 -4.3166 31 1 5.2225 -0.6244 -5.4297 32 1 5.1332 1.0007 -3.4841 33 1 4.5792 -0.3617 -2.3715 34 1 0.5826 -0.0858 -4.8733 35 1 0.5068 -3.0031 -3.8138 36 1 -0.8820 -1.8460 -3.9962 37 1 -0.6995 -1.8707 -6.4401 38 1 0.0517 -3.5028 -6.1696 39 1 1.6166 -1.1633 -6.8162 40 1 2.2683 -2.5211 -5.8011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597758445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:40 Heat of formation + Delta-G solvation = -10.611452 kcal Electronic energy + Delta-G solvation = -19104.835475 eV Core-core repulsion = 16306.353840 eV Total energy + Delta-G solvation = -2798.481635 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79877 -38.09422 -36.59520 -33.66865 -33.27925 -30.48108 -27.94946 -25.55658 -25.08633 -23.50042 -22.29536 -22.07866 -20.15830 -19.80930 -18.85648 -16.38600 -16.08714 -15.66261 -15.61210 -14.78071 -14.51176 -14.33419 -13.79808 -13.31386 -12.89214 -12.43708 -12.38507 -12.19622 -11.77957 -11.49911 -11.29172 -11.13819 -10.94507 -10.82753 -10.70119 -10.63518 -10.42211 -10.23744 -10.19923 -10.12723 -9.91496 -9.78137 -8.93591 -8.52392 -8.28956 -8.24680 -5.99025 -4.01823 3.38524 3.40775 3.46247 3.72697 3.81614 4.29715 4.50979 4.54612 4.71790 4.79905 4.90242 5.11326 5.17824 5.27350 5.34195 5.47913 5.58749 5.67563 5.78665 5.81472 5.82732 5.89957 5.97462 6.07368 6.15331 6.23942 6.30287 6.42016 6.50371 6.61856 6.67984 6.88555 6.98814 7.24066 7.53622 7.80789 8.04332 8.22377 8.54537 9.06890 9.34482 9.63644 11.08543 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.005757 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.675004 B = 4862.215873 C = 5371.023895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.550 6.550 14 N -0.736 5.736 15 C 0.179 3.821 16 H 0.093 0.907 17 C -0.161 4.161 18 C -0.175 4.175 19 C -0.171 4.171 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.126 4.126 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.011 0.989 27 H 0.260 0.740 28 H 0.394 0.606 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 -0.958 -16.456 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.426 6.426 14 N -0.387 5.387 15 C 0.073 3.927 16 H 0.111 0.889 17 C -0.181 4.181 18 C -0.213 4.213 19 C -0.208 4.208 20 C -0.133 4.133 21 C -0.170 4.170 22 C -0.182 4.182 23 C -0.164 4.164 24 H 0.049 0.951 25 H 0.110 0.890 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.227 0.773 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.123 -1.576 -16.192 16.269 hybrid contribution 0.023 0.116 0.752 0.761 sum 0.146 -1.460 -15.440 15.509 Atomic orbital electron populations 1.21725 0.96664 0.99702 1.00820 1.18851 0.94061 0.96769 0.89529 0.93185 1.21110 1.30852 1.12716 0.89058 0.90916 1.24948 0.95174 0.95083 0.99065 1.69862 1.37167 1.23143 1.23534 0.86530 0.79263 0.79720 0.81745 1.21416 1.20251 1.20241 1.21904 0.78179 0.84066 0.84574 1.90509 1.38325 1.27106 1.86703 1.46237 1.54825 1.32358 1.05323 1.20435 0.91037 0.96751 0.84442 0.88931 1.22660 0.89892 1.02387 1.03154 1.22908 1.00392 0.98146 0.99860 1.22904 1.00674 1.00398 0.96853 1.22801 0.96517 0.98422 0.95542 1.22900 0.99596 0.98586 0.95921 1.22834 0.97529 1.00711 0.97111 1.22811 0.97108 0.99334 0.97173 0.95106 0.88986 0.96955 0.92986 0.77301 0.88310 0.88975 0.89333 0.89385 0.87951 0.89280 0.90009 0.91545 0.90497 0.91721 0.91726 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.48 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.26 8.37 -34.44 -0.29 -14.54 16 5 H 0.07 2.19 6.75 -52.48 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 C 0.52 11.78 6.81 -10.98 -0.07 11.71 16 13 O -0.55 -14.13 14.42 5.56 0.08 -14.05 16 14 N -0.74 -12.70 4.71 -53.81 -0.25 -12.96 16 15 C 0.18 2.65 2.21 -67.93 -0.15 2.50 16 16 H 0.09 1.63 6.69 -51.93 -0.35 1.28 16 17 C -0.16 -2.16 4.92 -90.62 -0.45 -2.60 16 18 C -0.18 -2.23 10.18 -26.73 -0.27 -2.50 16 19 C -0.17 -2.56 10.12 -26.73 -0.27 -2.83 16 20 C -0.11 -1.35 3.37 -89.81 -0.30 -1.65 16 21 C -0.13 -1.63 7.64 -25.92 -0.20 -1.82 16 22 C -0.14 -1.43 8.08 -25.92 -0.21 -1.64 16 23 C -0.13 -1.28 7.19 -25.92 -0.19 -1.47 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.39 6.05 8.20 -40.82 -0.33 5.72 16 29 H 0.10 1.17 8.11 -51.93 -0.42 0.75 16 30 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.91 7.33 -51.93 -0.38 1.53 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -30.17 323.47 -8.84 -39.01 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.74 Total: 6.43 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.41 Total: -15.56 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.37 Total: -37.74 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.17 -8.84 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.399 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds