Wall clock time and date at job start Mon Mar 30 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47464 * 2 1 4 4 C 1.50696 * 109.47163 * 120.00280 * 2 1 3 5 5 H 1.08003 * 120.00443 * 119.99834 * 4 2 1 6 6 C 1.37882 * 119.99823 * 299.99688 * 4 2 1 7 7 N 1.31510 * 120.00039 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47005 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47403 * 300.00096 * 8 6 4 11 11 H 1.48501 * 109.47116 * 60.00396 * 8 6 4 12 12 C 1.50704 * 109.47082 * 239.99933 * 2 1 3 13 13 O 1.21283 * 120.00035 * 240.00045 * 12 2 1 14 14 N 1.34774 * 120.00098 * 60.00185 * 12 2 1 15 15 C 1.46495 * 120.00197 * 180.02562 * 14 12 2 16 16 H 1.08998 * 109.46994 * 17.08959 * 15 14 12 17 17 C 1.53003 * 109.47019 * 257.09000 * 15 14 12 18 18 C 1.52998 * 117.49787 * 128.62344 * 17 15 14 19 19 C 1.52999 * 60.00031 * 252.50741 * 18 17 15 20 20 C 1.52998 * 109.47465 * 137.08985 * 15 14 12 21 21 C 1.53784 * 113.61391 * 279.93329 * 20 15 14 22 22 C 1.53782 * 87.07711 * 220.01566 * 21 20 15 23 23 C 1.53774 * 113.61845 * 182.43025 * 20 15 14 24 24 H 1.09001 * 109.47464 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47162 * 300.00099 * 1 2 3 26 26 H 1.09004 * 109.47147 * 59.99921 * 1 2 3 27 27 H 0.96995 * 119.99978 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99764 * 359.97438 * 14 12 2 29 29 H 1.09005 * 115.54508 * 274.32673 * 17 15 14 30 30 H 1.08994 * 117.50027 * 359.97438 * 18 17 15 31 31 H 1.09004 * 117.49940 * 145.02184 * 18 17 15 32 32 H 1.08994 * 117.50076 * 252.51130 * 19 18 17 33 33 H 1.08994 * 117.49967 * 107.48725 * 19 18 17 34 34 H 1.09004 * 112.85062 * 51.22781 * 20 15 14 35 35 H 1.08998 * 113.61080 * 334.56071 * 21 20 15 36 36 H 1.08995 * 113.62059 * 105.46590 * 21 20 15 37 37 H 1.09001 * 113.61546 * 270.87448 * 22 21 20 38 38 H 1.09006 * 113.61252 * 139.97993 * 22 21 20 39 39 H 1.08999 * 113.61602 * 254.52674 * 23 20 15 40 40 H 1.08996 * 113.61750 * 25.34583 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8270 -0.4199 5.2205 10 1 1.8258 -2.5203 4.0077 11 1 3.8063 -1.1210 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 1 2.5318 -1.9415 -3.3802 17 6 3.3609 -0.1552 -4.2534 18 6 4.6508 -0.9225 -4.5508 19 6 4.5970 0.0578 -3.3773 20 6 1.0645 -1.0437 -4.6770 21 6 0.0751 -2.1859 -4.3916 22 6 0.0586 -2.4448 -5.9073 23 6 1.4577 -1.8082 -5.9519 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7088 1.1612 3.4844 28 1 1.1488 0.5385 -2.5436 29 1 3.0837 0.6477 -4.9365 30 1 4.6687 -1.9868 -4.3166 31 1 5.2225 -0.6244 -5.4297 32 1 5.1332 1.0007 -3.4841 33 1 4.5792 -0.3617 -2.3715 34 1 0.5826 -0.0858 -4.8733 35 1 0.5068 -3.0031 -3.8138 36 1 -0.8820 -1.8460 -3.9962 37 1 -0.6995 -1.8707 -6.4401 38 1 0.0517 -3.5028 -6.1696 39 1 1.6166 -1.1633 -6.8162 40 1 2.2683 -2.5211 -5.8011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597758445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:40 Heat of formation + Delta-G solvation = -27.981339 kcal Electronic energy + Delta-G solvation = -19105.588690 eV Core-core repulsion = 16306.353840 eV Total energy + Delta-G solvation = -2799.234850 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.12545 -39.51396 -37.73016 -35.74274 -34.82822 -32.47014 -29.24288 -27.18919 -26.45395 -24.78387 -23.86722 -23.20038 -21.38856 -21.25620 -20.08308 -18.36245 -17.74052 -17.07987 -16.84576 -16.36537 -15.96884 -15.82018 -15.01574 -14.89384 -14.50350 -14.31281 -13.46320 -13.30999 -13.23225 -12.97981 -12.80337 -12.72243 -12.59274 -12.39851 -12.24172 -12.19442 -11.97729 -11.80353 -11.29961 -11.26984 -11.14869 -11.03744 -10.91493 -10.56898 -10.19413 -9.76851 -8.14942 -6.25094 1.39480 1.41042 1.49658 2.00533 2.32077 2.49046 3.09673 3.14346 3.51287 3.78923 3.86703 3.99070 4.10274 4.11653 4.18902 4.28817 4.54752 4.59637 4.69215 4.76100 4.77821 4.91424 4.91757 4.95510 5.00100 5.01528 5.04985 5.13593 5.16707 5.27080 5.34943 5.38729 5.50916 5.63236 5.72240 5.80838 5.95962 6.23165 6.77741 6.91574 7.40918 7.63559 8.90633 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.005757 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.675004 B = 4862.215873 C = 5371.023895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.037 0.963 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.526 3.474 13 O -0.590 6.590 14 N -0.715 5.715 15 C 0.177 3.823 16 H 0.059 0.941 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.195 4.195 20 C -0.109 4.109 21 C -0.146 4.146 22 C -0.132 4.132 23 C -0.118 4.118 24 H 0.020 0.980 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 -0.107 -18.755 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.055 0.945 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.315 3.685 13 O -0.470 6.470 14 N -0.366 5.366 15 C 0.073 3.927 16 H 0.077 0.923 17 C -0.171 4.171 18 C -0.193 4.193 19 C -0.232 4.232 20 C -0.128 4.128 21 C -0.183 4.183 22 C -0.169 4.169 23 C -0.156 4.156 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.242 0.758 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.447 -0.696 -18.530 18.548 hybrid contribution 0.197 -0.147 1.456 1.476 sum -0.250 -0.843 -17.074 17.097 Atomic orbital electron populations 1.21530 0.95149 0.99217 1.01630 1.18782 0.95259 0.95735 0.89923 0.94521 1.21253 1.31507 1.12633 0.91241 0.93585 1.25590 0.95239 0.95772 1.01372 1.69939 1.37193 1.23575 1.24303 0.85681 0.78627 0.78747 0.78989 1.19786 1.20239 1.20287 1.21406 0.77955 0.83485 0.85653 1.90489 1.40212 1.28882 1.87429 1.45974 1.53760 1.32261 1.04624 1.20608 0.93103 0.95037 0.83991 0.92282 1.22702 0.88879 1.02910 1.02645 1.22971 0.99799 0.97064 0.99512 1.22804 1.03154 1.01884 0.95370 1.22851 0.95209 0.99408 0.95369 1.22931 0.99430 0.98198 0.97773 1.22808 0.97864 1.01454 0.94817 1.22778 0.97041 0.99088 0.96673 0.96086 0.91217 0.92963 0.92621 0.75773 0.85279 0.90190 0.86067 0.87732 0.92629 0.87172 0.92663 0.91762 0.88614 0.91260 0.89386 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.53 -31.30 8.37 25.60 0.21 -31.08 16 5 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -51.96 11.32 21.45 0.24 -51.72 16 8 Si 0.95 45.83 29.54 68.60 2.03 47.86 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.53 24.50 6.81 87.66 0.60 25.10 16 13 O -0.59 -32.03 14.42 -3.04 -0.04 -32.08 16 14 N -0.72 -24.53 4.71 -442.54 -2.09 -26.62 16 15 C 0.18 5.12 2.21 44.99 0.10 5.22 16 16 H 0.06 2.15 6.69 -2.39 -0.02 2.13 16 17 C -0.15 -3.75 4.92 -10.79 -0.05 -3.81 16 18 C -0.16 -3.69 10.18 30.59 0.31 -3.38 16 19 C -0.19 -5.78 10.12 30.59 0.31 -5.47 16 20 C -0.11 -2.33 3.37 -10.27 -0.03 -2.37 16 21 C -0.15 -3.41 7.64 31.12 0.24 -3.17 16 22 C -0.13 -2.24 8.08 31.12 0.25 -1.99 16 23 C -0.12 -2.02 7.19 31.12 0.22 -1.79 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 26 H 0.05 1.95 7.56 -2.38 -0.02 1.93 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.41 11.84 8.20 -92.71 -0.76 11.08 16 29 H 0.13 2.49 8.11 -2.38 -0.02 2.47 16 30 H 0.08 2.10 8.05 -2.39 -0.02 2.08 16 31 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.05 2.20 7.33 -2.39 -0.02 2.18 16 34 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.05 1.57 8.00 -2.39 -0.02 1.55 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 Total: -1.00 -68.24 323.47 3.60 -64.64 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.25 Total: 22.69 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.21 Total: -24.77 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.84 Total: -78.33 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.04 Total: -32.08 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -68.24 3.60 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.655 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds