Wall clock time and date at job start Mon Mar 30 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47096 * 119.99882 * 2 1 3 5 5 H 1.07993 * 119.99952 * 119.99931 * 4 2 1 6 6 C 1.37880 * 119.99937 * 300.27785 * 4 2 1 7 7 N 1.31517 * 120.00304 * 359.72257 * 6 4 2 8 8 Si 1.86801 * 120.00101 * 179.72647 * 6 4 2 9 9 H 1.48505 * 109.47100 * 59.99522 * 8 6 4 10 10 H 1.48494 * 109.47281 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46857 * 299.99819 * 8 6 4 12 12 C 1.50692 * 109.46875 * 240.00065 * 2 1 3 13 13 O 1.21282 * 119.99923 * 273.72281 * 12 2 1 14 14 N 1.34777 * 120.00470 * 93.73137 * 12 2 1 15 15 C 1.47021 * 125.65265 * 184.64184 * 14 12 2 16 16 C 1.54312 * 107.27699 * 180.96910 * 15 14 12 17 17 C 1.55157 * 102.86301 * 22.52394 * 16 15 14 18 18 H 1.08993 * 111.03663 * 82.39856 * 17 16 15 19 19 C 1.53002 * 111.00098 * 206.23211 * 17 16 15 20 20 C 1.53787 * 113.61364 * 271.33075 * 19 17 16 21 21 C 1.53957 * 87.02068 * 220.05240 * 20 19 17 22 22 C 1.53781 * 113.61107 * 173.72585 * 19 17 16 23 23 C 1.47429 * 125.64286 * 4.94857 * 14 12 2 24 24 H 1.08998 * 109.47381 * 65.36096 * 1 2 3 25 25 H 1.09001 * 109.47174 * 185.35992 * 1 2 3 26 26 H 1.08999 * 109.47256 * 305.35731 * 1 2 3 27 27 H 0.96991 * 120.00309 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.87888 * 300.51467 * 15 14 12 29 29 H 1.08997 * 109.88241 * 61.67460 * 15 14 12 30 30 H 1.09004 * 110.91993 * 264.11420 * 16 15 14 31 31 H 1.08994 * 110.59452 * 140.78691 * 16 15 14 32 32 H 1.08996 * 112.85164 * 42.53223 * 19 17 16 33 33 H 1.09000 * 113.61414 * 334.57061 * 20 19 17 34 34 H 1.08996 * 113.61125 * 105.47656 * 20 19 17 35 35 H 1.08998 * 113.53386 * 270.81357 * 21 20 19 36 36 H 1.08991 * 113.74690 * 139.94226 * 21 20 19 37 37 H 1.09000 * 113.61848 * 254.52782 * 22 19 17 38 38 H 1.09007 * 113.61532 * 25.43428 * 22 19 17 39 39 H 1.09001 * 110.36276 * 274.67337 * 23 14 12 40 40 H 1.08999 * 110.36596 * 36.99876 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6945 -0.2426 2.4827 7 7 0.9384 0.8267 2.6035 8 14 2.3109 -1.1276 4.0080 9 1 3.7959 -1.1283 4.0138 10 1 1.8119 -0.4304 5.2204 11 1 1.8153 -2.5275 4.0022 12 6 2.0323 -0.7104 -1.2304 13 8 2.1701 -1.9153 -1.2212 14 7 2.3285 -0.0068 -2.3411 15 6 2.7331 -0.5772 -3.6344 16 6 2.9908 0.6026 -4.5951 17 6 3.2731 1.7814 -3.6266 18 1 4.3097 1.7715 -3.2899 19 6 2.9238 3.1214 -4.2773 20 6 4.0864 3.7435 -5.0687 21 6 3.6445 5.1019 -4.4944 22 6 3.0354 4.3190 -3.3191 23 6 2.3067 1.4627 -2.4586 24 1 -0.3634 0.4284 -0.9341 25 1 -0.3633 -1.0232 0.0960 26 1 -0.3634 0.5947 0.8381 27 1 0.7011 1.1559 3.4844 28 1 3.6436 -1.1639 -3.5122 29 1 1.9346 -1.2059 -4.0283 30 1 2.1110 0.8070 -5.2053 31 1 3.8590 0.4030 -5.2231 32 1 1.9854 3.0912 -4.8309 33 1 5.0697 3.4231 -4.7246 34 1 3.9692 3.6666 -6.1496 35 1 2.9038 5.6139 -5.1085 36 1 4.4741 5.7472 -4.2058 37 1 2.0712 4.7061 -2.9897 38 1 3.7310 4.1562 -2.4958 39 1 1.3004 1.8095 -2.6934 40 1 2.6618 1.9223 -1.5362 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597782237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:30 Heat of formation + Delta-G solvation = -30.974421 kcal Electronic energy + Delta-G solvation = -18980.040352 eV Core-core repulsion = 16180.675713 eV Total energy + Delta-G solvation = -2799.364639 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85493 -38.48288 -36.33200 -33.69054 -31.41402 -30.25408 -28.90483 -25.77973 -25.15202 -24.95353 -23.40550 -21.38083 -20.42443 -19.51003 -18.39028 -16.46190 -15.95663 -15.89887 -15.57315 -14.79084 -14.18746 -14.04348 -13.46696 -13.24744 -12.71976 -12.60725 -12.56045 -12.50229 -12.26498 -11.82356 -11.53294 -11.38268 -11.00990 -10.94733 -10.70926 -10.68471 -10.63631 -10.51140 -10.22417 -10.12086 -10.03931 -9.98905 -8.97503 -8.55804 -8.28887 -7.96405 -6.01941 -4.05241 3.36653 3.39120 3.44180 3.74371 3.77444 4.34630 4.47343 4.56064 4.60833 4.74993 4.86213 5.10783 5.17700 5.31222 5.41012 5.48335 5.62024 5.66599 5.70397 5.75594 5.82897 5.84890 5.91616 5.95181 6.07928 6.18078 6.20834 6.24294 6.36670 6.50551 6.72164 6.90202 7.00625 7.06083 7.52032 7.78726 8.01232 8.18435 8.45572 8.98712 9.27555 9.59158 11.05681 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.005521 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.615751 B = 5070.238110 C = 5674.878129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.036 3.964 3 H 0.045 0.955 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.537 3.463 13 O -0.550 6.550 14 N -0.633 5.633 15 C 0.105 3.895 16 C -0.124 4.124 17 C -0.093 4.093 18 H 0.083 0.917 19 C -0.097 4.097 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.138 4.138 23 C 0.113 3.887 24 H 0.009 0.991 25 H 0.035 0.965 26 H 0.091 0.909 27 H 0.262 0.738 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 8.566 -14.902 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.015 3.985 3 H 0.063 0.937 4 C -0.539 4.539 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.329 3.671 13 O -0.426 6.426 14 N -0.370 5.370 15 C -0.018 4.018 16 C -0.162 4.162 17 C -0.112 4.112 18 H 0.102 0.898 19 C -0.116 4.116 20 C -0.172 4.172 21 C -0.182 4.182 22 C -0.176 4.176 23 C -0.010 4.010 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.717 7.951 -14.654 17.081 hybrid contribution 0.276 -0.414 0.760 0.908 sum 3.992 7.536 -13.895 16.303 Atomic orbital electron populations 1.21646 0.96098 1.00873 0.99690 1.18857 0.94240 0.96518 0.88896 0.93733 1.20997 1.31288 1.12471 0.89187 0.91631 1.24923 0.95043 0.95045 0.98997 1.69871 1.36851 1.23021 1.23648 0.86517 0.79161 0.79879 0.81660 1.20238 1.21280 1.20112 1.21819 0.74694 0.87511 0.83078 1.90533 1.53406 1.15425 1.83251 1.48831 1.70387 1.06852 1.10882 1.21781 0.99767 0.95870 0.84402 1.22666 1.01854 0.94509 0.97152 1.22413 0.99900 0.93661 0.95218 0.89846 1.22479 0.98895 0.92825 0.97417 1.22972 0.98518 0.96298 0.99461 1.22846 1.00627 0.96411 0.98268 1.22949 1.01604 0.96098 0.96913 1.22204 0.98794 0.81385 0.98641 0.97173 0.94576 0.89080 0.92869 0.92264 0.92430 0.90880 0.90669 0.89135 0.90147 0.91789 0.90485 0.91685 0.91267 0.89758 0.91962 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.87 37.16 0.33 -2.77 16 2 C 0.04 0.93 2.33 -92.92 -0.22 0.72 16 3 H 0.04 1.16 6.39 -51.93 -0.33 0.82 16 4 C -0.50 -14.54 8.32 -34.44 -0.29 -14.83 16 5 H 0.07 2.00 7.22 -52.49 -0.38 1.62 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.35 11.37 55.43 0.63 -24.72 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.54 13.16 6.85 -10.99 -0.08 13.08 16 13 O -0.55 -15.28 16.41 5.56 0.09 -15.18 16 14 N -0.63 -12.24 3.33 -170.52 -0.57 -12.81 16 15 C 0.11 1.67 6.87 -3.07 -0.02 1.64 16 16 C -0.12 -1.42 6.42 -24.90 -0.16 -1.58 16 17 C -0.09 -1.10 2.81 -88.47 -0.25 -1.35 16 18 H 0.08 1.02 7.97 -51.93 -0.41 0.60 16 19 C -0.10 -0.94 3.19 -89.80 -0.29 -1.23 16 20 C -0.14 -1.14 7.65 -25.82 -0.20 -1.34 16 21 C -0.14 -1.21 8.09 -25.82 -0.21 -1.41 16 22 C -0.14 -1.35 7.24 -25.92 -0.19 -1.54 16 23 C 0.11 1.76 5.64 -2.53 -0.01 1.75 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.09 2.39 6.22 -51.93 -0.32 2.06 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.76 7.95 -51.93 -0.41 0.34 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.85 8.02 -51.93 -0.42 0.43 16 33 H 0.08 0.69 7.97 -51.93 -0.41 0.27 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.88 8.10 -51.92 -0.42 0.46 16 39 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 40 H 0.08 1.35 6.85 -51.93 -0.36 0.99 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -31.63 317.86 -8.57 -40.20 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.82 Total: -2.04 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.67 Total: -7.23 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.06 Total: -37.53 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.63 -8.57 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597782237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.227 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds