Wall clock time and date at job start Mon Mar 30 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47096 * 119.99882 * 2 1 3 5 5 H 1.07993 * 119.99952 * 119.99931 * 4 2 1 6 6 C 1.37880 * 119.99937 * 300.27785 * 4 2 1 7 7 N 1.31517 * 120.00304 * 359.72257 * 6 4 2 8 8 Si 1.86801 * 120.00101 * 179.72647 * 6 4 2 9 9 H 1.48505 * 109.47100 * 59.99522 * 8 6 4 10 10 H 1.48494 * 109.47281 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46857 * 299.99819 * 8 6 4 12 12 C 1.50692 * 109.46875 * 240.00065 * 2 1 3 13 13 O 1.21282 * 119.99923 * 273.72281 * 12 2 1 14 14 N 1.34777 * 120.00470 * 93.73137 * 12 2 1 15 15 C 1.47021 * 125.65265 * 184.64184 * 14 12 2 16 16 C 1.54312 * 107.27699 * 180.96910 * 15 14 12 17 17 C 1.55157 * 102.86301 * 22.52394 * 16 15 14 18 18 H 1.08993 * 111.03663 * 82.39856 * 17 16 15 19 19 C 1.53002 * 111.00098 * 206.23211 * 17 16 15 20 20 C 1.53787 * 113.61364 * 271.33075 * 19 17 16 21 21 C 1.53957 * 87.02068 * 220.05240 * 20 19 17 22 22 C 1.53781 * 113.61107 * 173.72585 * 19 17 16 23 23 C 1.47429 * 125.64286 * 4.94857 * 14 12 2 24 24 H 1.08998 * 109.47381 * 65.36096 * 1 2 3 25 25 H 1.09001 * 109.47174 * 185.35992 * 1 2 3 26 26 H 1.08999 * 109.47256 * 305.35731 * 1 2 3 27 27 H 0.96991 * 120.00309 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.87888 * 300.51467 * 15 14 12 29 29 H 1.08997 * 109.88241 * 61.67460 * 15 14 12 30 30 H 1.09004 * 110.91993 * 264.11420 * 16 15 14 31 31 H 1.08994 * 110.59452 * 140.78691 * 16 15 14 32 32 H 1.08996 * 112.85164 * 42.53223 * 19 17 16 33 33 H 1.09000 * 113.61414 * 334.57061 * 20 19 17 34 34 H 1.08996 * 113.61125 * 105.47656 * 20 19 17 35 35 H 1.08998 * 113.53386 * 270.81357 * 21 20 19 36 36 H 1.08991 * 113.74690 * 139.94226 * 21 20 19 37 37 H 1.09000 * 113.61848 * 254.52782 * 22 19 17 38 38 H 1.09007 * 113.61532 * 25.43428 * 22 19 17 39 39 H 1.09001 * 110.36276 * 274.67337 * 23 14 12 40 40 H 1.08999 * 110.36596 * 36.99876 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6945 -0.2426 2.4827 7 7 0.9384 0.8267 2.6035 8 14 2.3109 -1.1276 4.0080 9 1 3.7959 -1.1283 4.0138 10 1 1.8119 -0.4304 5.2204 11 1 1.8153 -2.5275 4.0022 12 6 2.0323 -0.7104 -1.2304 13 8 2.1701 -1.9153 -1.2212 14 7 2.3285 -0.0068 -2.3411 15 6 2.7331 -0.5772 -3.6344 16 6 2.9908 0.6026 -4.5951 17 6 3.2731 1.7814 -3.6266 18 1 4.3097 1.7715 -3.2899 19 6 2.9238 3.1214 -4.2773 20 6 4.0864 3.7435 -5.0687 21 6 3.6445 5.1019 -4.4944 22 6 3.0354 4.3190 -3.3191 23 6 2.3067 1.4627 -2.4586 24 1 -0.3634 0.4284 -0.9341 25 1 -0.3633 -1.0232 0.0960 26 1 -0.3634 0.5947 0.8381 27 1 0.7011 1.1559 3.4844 28 1 3.6436 -1.1639 -3.5122 29 1 1.9346 -1.2059 -4.0283 30 1 2.1110 0.8070 -5.2053 31 1 3.8590 0.4030 -5.2231 32 1 1.9854 3.0912 -4.8309 33 1 5.0697 3.4231 -4.7246 34 1 3.9692 3.6666 -6.1496 35 1 2.9038 5.6139 -5.1085 36 1 4.4741 5.7472 -4.2058 37 1 2.0712 4.7061 -2.9897 38 1 3.7310 4.1562 -2.4958 39 1 1.3004 1.8095 -2.6934 40 1 2.6618 1.9223 -1.5362 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597782237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:30 Heat of formation + Delta-G solvation = -49.051619 kcal Electronic energy + Delta-G solvation = -18980.824238 eV Core-core repulsion = 16180.675713 eV Total energy + Delta-G solvation = -2800.148525 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16308 -39.77689 -37.71873 -35.80991 -33.06831 -31.98496 -30.15382 -27.31633 -26.64658 -25.94366 -24.93063 -22.94065 -21.47723 -20.25764 -20.08277 -18.42252 -17.85535 -17.18793 -16.79341 -16.30166 -15.77194 -15.38595 -14.82760 -14.63118 -14.39021 -14.13001 -13.96924 -13.44752 -13.31192 -13.15367 -12.98675 -12.83845 -12.70749 -12.66100 -12.60687 -12.28684 -12.08341 -11.86838 -11.62001 -11.31068 -11.11331 -10.96650 -10.84051 -10.62531 -10.32013 -9.56142 -8.18581 -6.30030 1.39097 1.41496 1.49627 1.85265 2.18367 2.44486 3.10551 3.40842 3.61273 3.77555 3.94662 4.04157 4.21985 4.25673 4.28124 4.38752 4.44409 4.63447 4.67047 4.73160 4.86632 4.90079 4.93516 4.99675 4.99883 5.00406 5.01815 5.10775 5.19586 5.24419 5.33624 5.38999 5.51275 5.54525 5.66994 5.74708 5.87084 6.14535 6.62361 6.75223 7.33765 7.44314 8.87614 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.005521 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.615751 B = 5070.238110 C = 5674.878129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.033 3.967 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.040 0.960 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.532 3.468 13 O -0.595 6.595 14 N -0.630 5.630 15 C 0.095 3.905 16 C -0.107 4.107 17 C -0.081 4.081 18 H 0.080 0.920 19 C -0.093 4.093 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.148 4.148 23 C 0.105 3.895 24 H 0.038 0.962 25 H 0.018 0.982 26 H 0.076 0.924 27 H 0.267 0.733 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 9.878 -16.523 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.012 3.988 3 H 0.059 0.941 4 C -0.571 4.571 5 H 0.058 0.942 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.323 3.677 13 O -0.476 6.476 14 N -0.364 5.364 15 C -0.027 4.027 16 C -0.144 4.144 17 C -0.100 4.100 18 H 0.098 0.902 19 C -0.112 4.112 20 C -0.165 4.165 21 C -0.176 4.176 22 C -0.186 4.186 23 C -0.017 4.017 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.078 9.321 -16.316 19.228 hybrid contribution 0.159 -0.770 1.243 1.471 sum 4.237 8.551 -15.074 17.841 Atomic orbital electron populations 1.21461 0.95414 0.99622 1.00495 1.18777 0.94851 0.95989 0.89191 0.94138 1.21121 1.32247 1.12469 0.91236 0.94182 1.25598 0.94982 0.95699 1.01370 1.69939 1.36733 1.23430 1.24590 0.85623 0.78810 0.78637 0.78664 1.19788 1.19526 1.20397 1.21446 0.75077 0.86948 0.84199 1.90493 1.55722 1.17050 1.84309 1.48760 1.68192 1.08611 1.10806 1.22084 0.99247 0.97861 0.83510 1.22666 1.03976 0.91634 0.96170 1.22362 0.98569 0.95300 0.93762 0.90180 1.22492 1.00139 0.91028 0.97509 1.22941 0.97753 0.95668 1.00157 1.22840 1.00839 0.96517 0.97401 1.22990 1.01358 0.96973 0.97261 1.22465 1.00618 0.78864 0.99737 0.94332 0.96257 0.90571 0.92355 0.93140 0.92524 0.88815 0.87933 0.87962 0.90233 0.90246 0.89405 0.91398 0.91633 0.91012 0.90803 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 8.87 71.98 0.64 -4.99 16 2 C 0.03 1.77 2.33 -12.29 -0.03 1.74 16 3 H 0.04 2.17 6.39 -2.39 -0.02 2.15 16 4 C -0.53 -31.91 8.32 25.60 0.21 -31.70 16 5 H 0.04 2.55 7.22 -2.91 -0.02 2.53 16 6 C 0.02 1.33 5.30 84.65 0.45 1.78 16 7 N -0.91 -51.70 11.37 21.45 0.24 -51.45 16 8 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 C 0.53 26.80 6.85 87.65 0.60 27.40 16 13 O -0.60 -34.33 16.41 -3.04 -0.05 -34.38 16 14 N -0.63 -24.35 3.33 -811.81 -2.70 -27.05 16 15 C 0.10 2.92 6.87 86.72 0.60 3.51 16 16 C -0.11 -2.09 6.42 31.78 0.20 -1.89 16 17 C -0.08 -1.73 2.81 -9.40 -0.03 -1.76 16 18 H 0.08 1.80 7.97 -2.39 -0.02 1.78 16 19 C -0.09 -1.52 3.19 -10.26 -0.03 -1.56 16 20 C -0.13 -1.72 7.65 31.18 0.24 -1.48 16 21 C -0.14 -1.93 8.09 31.18 0.25 -1.68 16 22 C -0.15 -2.65 7.24 31.12 0.23 -2.42 16 23 C 0.11 3.20 5.64 86.85 0.49 3.69 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 4.04 6.22 -2.39 -0.01 4.03 16 27 H 0.27 14.32 8.31 -92.72 -0.77 13.55 16 28 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.52 7.95 -2.38 -0.02 1.51 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.50 8.02 -2.39 -0.02 1.48 16 33 H 0.08 1.11 7.97 -2.39 -0.02 1.09 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 39 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 40 H 0.06 2.13 6.85 -2.39 -0.02 2.11 16 Total: -1.00 -69.83 317.86 4.33 -65.50 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.99 Total: 9.29 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 3.82 Total: -9.37 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -2.46 Total: -78.50 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.05 Total: -34.38 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.83 4.33 -65.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597782237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.447 kcal (2) G-P(sol) polarization free energy of solvation -69.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds