Wall clock time and date at job start Mon Mar 30 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 120.00242 * 2 1 4 4 C 1.52998 * 109.46676 * 125.00208 * 3 2 1 5 5 H 1.08999 * 109.50026 * 305.06340 * 4 3 2 6 6 C 1.53034 * 109.50252 * 65.16401 * 4 3 2 7 7 C 1.53037 * 109.54262 * 181.31193 * 6 4 3 8 8 C 1.53190 * 109.31333 * 298.63576 * 7 6 4 9 9 N 1.46928 * 108.77597 * 54.63260 * 8 7 6 10 10 C 1.34775 * 120.62988 * 126.36763 * 9 8 7 11 11 O 1.21288 * 119.99769 * 175.41533 * 10 9 8 12 12 C 1.50700 * 120.00106 * 355.41802 * 10 9 8 13 13 H 1.08997 * 109.47087 * 35.45150 * 12 10 9 14 14 C 1.53003 * 109.46843 * 155.45547 * 12 10 9 15 15 C 1.50699 * 109.47015 * 275.44859 * 12 10 9 16 16 H 1.08001 * 119.99970 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00157 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99837 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00337 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46829 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47243 * 119.99843 * 19 17 15 22 22 H 1.48496 * 109.47372 * 240.00181 * 19 17 15 23 23 C 1.46922 * 118.73867 * 306.39333 * 9 8 7 24 24 H 1.07990 * 120.00059 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99650 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99650 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46945 * 245.00250 * 3 2 1 28 28 H 1.08994 * 109.46612 * 5.00441 * 3 2 1 29 29 H 1.09003 * 109.46000 * 301.33774 * 6 4 3 30 30 H 1.09006 * 109.45866 * 61.28907 * 6 4 3 31 31 H 1.08998 * 109.49763 * 178.68094 * 7 6 4 32 32 H 1.09002 * 109.52142 * 58.60101 * 7 6 4 33 33 H 1.08998 * 109.58884 * 294.84656 * 8 7 6 34 34 H 1.09000 * 109.58946 * 174.41914 * 8 7 6 35 35 H 1.08999 * 109.46922 * 305.16237 * 14 12 10 36 36 H 1.08994 * 109.47388 * 65.17227 * 14 12 10 37 37 H 1.09001 * 109.46526 * 185.17610 * 14 12 10 38 38 H 0.96997 * 119.99637 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58549 * 293.82288 * 23 9 8 40 40 H 1.08998 * 109.70616 * 173.46928 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 2.4890 1.1457 2.1061 6 6 4.1028 0.2534 0.9907 7 6 5.0560 0.2586 2.1880 8 6 5.7543 1.6194 2.2737 9 7 4.7320 2.6740 2.3116 10 6 4.7309 3.5943 3.2962 11 8 3.9337 4.5080 3.2714 12 6 5.7203 3.4880 4.4280 13 1 6.6653 3.0988 4.0491 14 6 5.9470 4.8724 5.0388 15 6 5.1796 2.5564 5.4820 16 1 4.2162 2.0878 5.3456 17 6 5.9154 2.3015 6.6197 18 7 7.0889 2.8717 6.7855 19 14 5.2456 1.1461 7.9259 20 1 3.9157 0.6385 7.5027 21 1 6.1779 0.0037 8.1015 22 1 5.1107 1.8772 9.2114 23 6 3.7105 2.7060 1.2560 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 2.6213 1.4026 -0.9314 28 1 1.3587 2.1316 0.0896 29 1 3.6230 -0.7222 0.9128 30 1 4.6644 0.4554 0.0785 31 1 5.8021 -0.5259 2.0624 32 1 4.4918 0.0810 3.1035 33 1 6.3911 1.7591 1.4001 34 1 6.3586 1.6637 3.1797 35 1 6.2503 5.5691 4.2573 36 1 5.0229 5.2222 5.4990 37 1 6.7295 4.8119 5.7953 38 1 7.6066 2.6920 7.5858 39 1 4.1806 2.9341 0.2994 40 1 2.9659 3.4674 1.4880 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597994258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:16 Heat of formation + Delta-G solvation = -39.081549 kcal Electronic energy + Delta-G solvation = -19208.951201 eV Core-core repulsion = 16409.235010 eV Total energy + Delta-G solvation = -2799.716191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56263 -37.38541 -34.96613 -33.80895 -32.03005 -31.15612 -30.18229 -26.28666 -25.30711 -24.98571 -22.24175 -21.92579 -20.16626 -19.43804 -18.06727 -16.44025 -16.28651 -15.55510 -15.03872 -14.61613 -14.25527 -14.07910 -14.00149 -13.42879 -12.99026 -12.81689 -12.57757 -12.27673 -11.89985 -11.68015 -11.40530 -11.22271 -11.01711 -10.87103 -10.79414 -10.59393 -10.46466 -10.35524 -10.25262 -10.11360 -9.92884 -9.38608 -9.00309 -8.60236 -8.31564 -7.91804 -6.10858 -4.17981 2.22613 3.24775 3.33233 3.37221 3.71295 3.85980 4.39442 4.72993 4.92818 5.01566 5.16184 5.20902 5.22120 5.46005 5.54413 5.61215 5.66234 5.79677 5.83673 5.88893 5.99912 6.07489 6.09086 6.24438 6.36941 6.40898 6.48743 6.57109 6.66862 6.73676 6.86596 7.02455 7.11436 7.31288 7.58634 7.77115 7.96088 8.18204 8.32846 8.82353 9.25546 9.47524 10.95568 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.006333 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.932335 B = 4420.337285 C = 4893.906268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.088 4.088 4 C -0.097 4.097 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.134 4.134 8 C 0.110 3.890 9 N -0.619 5.619 10 C 0.529 3.471 11 O -0.567 6.567 12 C 0.030 3.970 13 H 0.047 0.953 14 C -0.120 4.120 15 C -0.505 4.505 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.117 3.883 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.009 0.991 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.262 0.738 39 H 0.054 0.946 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -6.726 -12.338 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.163 4.163 3 C -0.126 4.126 4 C -0.117 4.117 5 H 0.094 0.906 6 C -0.149 4.149 7 C -0.172 4.172 8 C -0.013 4.013 9 N -0.353 5.353 10 C 0.321 3.679 11 O -0.446 6.446 12 C 0.009 3.991 13 H 0.065 0.935 14 C -0.179 4.179 15 C -0.544 4.544 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.007 4.007 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.925 -6.204 -12.204 14.550 hybrid contribution -0.370 -0.807 0.713 1.138 sum -5.295 -7.011 -11.491 14.465 Atomic orbital electron populations 1.23828 0.96041 1.01635 1.02401 1.22988 0.95884 0.98676 0.98768 1.20763 0.97982 0.95332 0.98511 1.21497 0.95799 0.95862 0.98530 0.90636 1.21593 0.96661 0.98257 0.98381 1.21896 0.98997 0.97408 0.98944 1.21731 0.90326 0.86074 1.03193 1.48154 1.29934 1.30507 1.26660 1.21972 0.85102 0.79125 0.81673 1.90515 1.42305 1.34214 1.77574 1.18940 0.93314 0.96454 0.90420 0.93504 1.21579 1.01877 0.94645 0.99764 1.20758 1.04493 1.26151 1.02964 0.92458 1.24896 0.94773 0.95988 0.97857 1.69909 1.11772 1.42843 1.27805 0.86459 0.79076 0.80518 0.81558 1.19743 1.20868 1.20842 1.21431 0.91859 0.96704 0.90693 0.88796 0.88691 0.87397 0.90966 0.91385 0.92145 0.92230 0.91319 0.90945 0.92944 0.87401 0.97188 0.94344 0.89808 0.92778 0.92729 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 14.32 29.01 0.42 -1.60 16 2 C -0.15 -1.52 9.03 -36.02 -0.33 -1.85 16 3 C -0.09 -0.98 5.14 -27.88 -0.14 -1.12 16 4 C -0.10 -1.33 2.33 -90.50 -0.21 -1.54 16 5 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.11 -1.37 5.00 -26.69 -0.13 -1.50 16 7 C -0.13 -1.92 6.08 -26.61 -0.16 -2.09 16 8 C 0.11 1.83 6.27 -3.71 -0.02 1.81 16 9 N -0.62 -11.96 2.97 -172.77 -0.51 -12.47 16 10 C 0.53 12.59 6.74 -10.99 -0.07 12.52 16 11 O -0.57 -14.96 15.63 5.55 0.09 -14.87 16 12 C 0.03 0.75 1.81 -92.92 -0.17 0.58 16 13 H 0.05 1.18 6.30 -51.93 -0.33 0.85 16 14 C -0.12 -3.09 8.33 37.16 0.31 -2.78 16 15 C -0.51 -13.57 8.36 -34.44 -0.29 -13.86 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.89 -24.23 11.38 55.43 0.63 -23.60 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.12 1.89 5.70 -3.71 -0.02 1.87 16 24 H 0.09 0.82 8.06 -52.49 -0.42 0.40 16 25 H 0.09 0.92 7.84 -52.48 -0.41 0.51 16 26 H 0.11 1.05 6.94 -52.48 -0.36 0.68 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.76 7.79 -51.93 -0.40 0.36 16 29 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 2.06 5.35 -51.93 -0.28 1.78 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.04 1.01 8.04 -51.93 -0.42 0.60 16 37 H 0.08 2.23 6.23 -51.93 -0.32 1.91 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.53 7.04 -51.93 -0.37 1.17 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -29.60 316.69 -7.55 -37.15 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.58 Total: 1.08 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.92 Total: -7.87 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.12 Total: -36.07 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.09 Total: -14.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.60 -7.55 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597994258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.930 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds