Wall clock time and date at job start Mon Mar 30 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 120.00242 * 2 1 4 4 C 1.52998 * 109.46676 * 125.00208 * 3 2 1 5 5 H 1.08999 * 109.50026 * 305.06340 * 4 3 2 6 6 C 1.53034 * 109.50252 * 65.16401 * 4 3 2 7 7 C 1.53037 * 109.54262 * 181.31193 * 6 4 3 8 8 C 1.53190 * 109.31333 * 298.63576 * 7 6 4 9 9 N 1.46928 * 108.77597 * 54.63260 * 8 7 6 10 10 C 1.34775 * 120.62988 * 126.36763 * 9 8 7 11 11 O 1.21288 * 119.99769 * 175.41533 * 10 9 8 12 12 C 1.50700 * 120.00106 * 355.41802 * 10 9 8 13 13 H 1.08997 * 109.47087 * 35.45150 * 12 10 9 14 14 C 1.53003 * 109.46843 * 155.45547 * 12 10 9 15 15 C 1.50699 * 109.47015 * 275.44859 * 12 10 9 16 16 H 1.08001 * 119.99970 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00157 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99837 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00337 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46829 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47243 * 119.99843 * 19 17 15 22 22 H 1.48496 * 109.47372 * 240.00181 * 19 17 15 23 23 C 1.46922 * 118.73867 * 306.39333 * 9 8 7 24 24 H 1.07990 * 120.00059 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99650 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99650 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46945 * 245.00250 * 3 2 1 28 28 H 1.08994 * 109.46612 * 5.00441 * 3 2 1 29 29 H 1.09003 * 109.46000 * 301.33774 * 6 4 3 30 30 H 1.09006 * 109.45866 * 61.28907 * 6 4 3 31 31 H 1.08998 * 109.49763 * 178.68094 * 7 6 4 32 32 H 1.09002 * 109.52142 * 58.60101 * 7 6 4 33 33 H 1.08998 * 109.58884 * 294.84656 * 8 7 6 34 34 H 1.09000 * 109.58946 * 174.41914 * 8 7 6 35 35 H 1.08999 * 109.46922 * 305.16237 * 14 12 10 36 36 H 1.08994 * 109.47388 * 65.17227 * 14 12 10 37 37 H 1.09001 * 109.46526 * 185.17610 * 14 12 10 38 38 H 0.96997 * 119.99637 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58549 * 293.82288 * 23 9 8 40 40 H 1.08998 * 109.70616 * 173.46928 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 2.4890 1.1457 2.1061 6 6 4.1028 0.2534 0.9907 7 6 5.0560 0.2586 2.1880 8 6 5.7543 1.6194 2.2737 9 7 4.7320 2.6740 2.3116 10 6 4.7309 3.5943 3.2962 11 8 3.9337 4.5080 3.2714 12 6 5.7203 3.4880 4.4280 13 1 6.6653 3.0988 4.0491 14 6 5.9470 4.8724 5.0388 15 6 5.1796 2.5564 5.4820 16 1 4.2162 2.0878 5.3456 17 6 5.9154 2.3015 6.6197 18 7 7.0889 2.8717 6.7855 19 14 5.2456 1.1461 7.9259 20 1 3.9157 0.6385 7.5027 21 1 6.1779 0.0037 8.1015 22 1 5.1107 1.8772 9.2114 23 6 3.7105 2.7060 1.2560 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 2.6213 1.4026 -0.9314 28 1 1.3587 2.1316 0.0896 29 1 3.6230 -0.7222 0.9128 30 1 4.6644 0.4554 0.0785 31 1 5.8021 -0.5259 2.0624 32 1 4.4918 0.0810 3.1035 33 1 6.3911 1.7591 1.4001 34 1 6.3586 1.6637 3.1797 35 1 6.2503 5.5691 4.2573 36 1 5.0229 5.2222 5.4990 37 1 6.7295 4.8119 5.7953 38 1 7.6066 2.6920 7.5858 39 1 4.1806 2.9341 0.2994 40 1 2.9659 3.4674 1.4880 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597994258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:16 Heat of formation + Delta-G solvation = -55.110613 kcal Electronic energy + Delta-G solvation = -19209.646273 eV Core-core repulsion = 16409.235010 eV Total energy + Delta-G solvation = -2800.411263 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13645 -38.83522 -36.16839 -35.78767 -33.33223 -32.60556 -31.91245 -27.55278 -27.13796 -26.52672 -23.93304 -23.18771 -21.39367 -20.34461 -19.73886 -18.38744 -18.11266 -16.96573 -16.43068 -16.02855 -15.87331 -15.37580 -15.20045 -14.73758 -14.70864 -14.06201 -13.83912 -13.63341 -13.60621 -13.35523 -12.91116 -12.78002 -12.75559 -12.41393 -12.27784 -12.17652 -12.06610 -11.95176 -11.64049 -11.45195 -11.22037 -11.07080 -10.62399 -10.30953 -10.13627 -9.44426 -8.17420 -6.31438 1.39344 1.42257 1.44108 1.52786 1.88732 2.29875 2.43988 3.11979 3.70943 3.86305 3.94602 4.12703 4.16200 4.33847 4.37604 4.46895 4.52236 4.62146 4.67642 4.76570 4.85030 4.91809 4.95577 4.96671 5.03106 5.06423 5.15317 5.21070 5.24984 5.37253 5.46036 5.54057 5.63217 5.77482 5.84052 5.85917 5.94545 6.13964 6.58858 6.70866 7.34047 7.46401 8.88820 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.006333 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.932335 B = 4420.337285 C = 4893.906268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.081 4.081 4 C -0.090 4.090 5 H 0.045 0.955 6 C -0.104 4.104 7 C -0.130 4.130 8 C 0.104 3.896 9 N -0.613 5.613 10 C 0.522 3.478 11 O -0.604 6.604 12 C 0.028 3.972 13 H 0.046 0.954 14 C -0.111 4.111 15 C -0.519 4.519 16 H 0.041 0.959 17 C 0.029 3.971 18 N -0.906 5.906 19 Si 0.956 3.044 20 H -0.276 1.276 21 H -0.269 1.269 22 H -0.281 1.281 23 C 0.112 3.888 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.021 0.979 36 H 0.018 0.982 37 H 0.071 0.929 38 H 0.267 0.733 39 H 0.083 0.917 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 -8.740 -13.889 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.172 4.172 3 C -0.119 4.119 4 C -0.109 4.109 5 H 0.063 0.937 6 C -0.141 4.141 7 C -0.168 4.168 8 C -0.018 4.018 9 N -0.345 5.345 10 C 0.314 3.686 11 O -0.486 6.486 12 C 0.007 3.993 13 H 0.064 0.936 14 C -0.169 4.169 15 C -0.557 4.557 16 H 0.059 0.941 17 C -0.172 4.172 18 N -0.544 5.544 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.194 1.194 22 H -0.206 1.206 23 C -0.010 4.010 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.138 0.862 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.901 -8.258 -13.788 16.803 hybrid contribution -0.363 -0.172 1.163 1.230 sum -5.264 -8.430 -12.626 16.068 Atomic orbital electron populations 1.24008 0.96175 1.02297 1.01618 1.23054 0.96098 0.98667 0.99427 1.20698 0.97483 0.95754 0.97967 1.21397 0.96420 0.94634 0.98459 0.93665 1.21584 0.95843 0.98622 0.98099 1.21870 0.99687 0.96456 0.98793 1.21918 0.90040 0.86642 1.03197 1.48175 1.30738 1.29649 1.25928 1.21668 0.84615 0.79834 0.82496 1.90485 1.43562 1.35936 1.78654 1.18867 0.93791 0.95673 0.90983 0.93589 1.21443 1.00301 0.95476 0.99682 1.20801 1.04017 1.26835 1.04073 0.94077 1.25560 0.94955 0.97227 0.99443 1.69984 1.12477 1.43520 1.28450 0.85535 0.78473 0.78976 0.78863 1.20028 1.19400 1.20644 1.21674 0.90891 0.97901 0.90530 0.87477 0.88855 0.86174 0.88995 0.92004 0.90112 0.89829 0.88585 0.93861 0.89734 0.90295 0.95957 0.96280 0.91029 0.92375 0.89847 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.65 14.32 67.78 0.97 -2.67 16 2 C -0.15 -2.83 9.03 25.65 0.23 -2.60 16 3 C -0.08 -1.61 5.14 29.85 0.15 -1.46 16 4 C -0.09 -2.30 2.33 -10.72 -0.02 -2.32 16 5 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 6 C -0.10 -2.21 5.00 30.62 0.15 -2.06 16 7 C -0.13 -3.46 6.08 30.67 0.19 -3.28 16 8 C 0.10 3.35 6.27 86.36 0.54 3.89 16 9 N -0.61 -23.61 2.97 -818.90 -2.43 -26.04 16 10 C 0.52 25.51 6.74 87.66 0.59 26.10 16 11 O -0.60 -32.92 15.63 -3.05 -0.05 -32.97 16 12 C 0.03 1.44 1.81 -12.29 -0.02 1.42 16 13 H 0.05 2.38 6.30 -2.39 -0.02 2.36 16 14 C -0.11 -5.85 8.33 71.98 0.60 -5.25 16 15 C -0.52 -28.59 8.36 25.60 0.21 -28.38 16 16 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 17 C 0.03 1.54 5.30 84.65 0.45 1.99 16 18 N -0.91 -49.94 11.38 21.45 0.24 -49.69 16 19 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.11 3.54 5.70 86.37 0.49 4.03 16 24 H 0.11 1.61 8.06 -2.92 -0.02 1.59 16 25 H 0.09 1.67 7.84 -2.91 -0.02 1.65 16 26 H 0.12 1.91 6.94 -2.91 -0.02 1.89 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 29 H 0.08 1.45 6.68 -2.39 -0.02 1.44 16 30 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 3.03 5.35 -2.39 -0.01 3.02 16 35 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.02 1.01 8.04 -2.39 -0.02 1.00 16 37 H 0.07 3.91 6.23 -2.39 -0.01 3.90 16 38 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 2.21 7.04 -2.39 -0.02 2.20 16 Total: -1.00 -65.05 316.69 5.32 -59.73 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.99 Total: 14.71 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.53 Total: -10.60 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -2.19 Total: -75.73 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.05 5.32 -59.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597994258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.621 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds