Wall clock time and date at job start Mon Mar 30 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47427 * 2 1 4 4 C 1.50700 * 109.47280 * 239.99586 * 2 1 3 5 5 H 1.08005 * 120.00195 * 240.00361 * 4 2 1 6 6 C 1.37872 * 120.00039 * 60.00317 * 4 2 1 7 7 N 1.31515 * 119.99830 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00567 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46807 * 59.99428 * 8 6 4 10 10 H 1.48490 * 109.47398 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46600 * 300.00429 * 8 6 4 12 12 C 1.50701 * 109.46643 * 119.99874 * 2 1 3 13 13 O 1.21290 * 120.00316 * 120.00066 * 12 2 1 14 14 N 1.34780 * 120.00186 * 299.99779 * 12 2 1 15 15 C 1.46501 * 119.99710 * 180.02562 * 14 12 2 16 16 C 1.53009 * 109.46495 * 180.02562 * 15 14 12 17 17 H 1.08993 * 109.76521 * 55.44872 * 16 15 14 18 18 C 1.53299 * 109.61425 * 294.99531 * 16 15 14 19 19 C 1.52885 * 108.57897 * 165.82981 * 18 16 15 20 20 C 1.52706 * 110.15205 * 54.52160 * 19 18 16 21 21 H 1.08997 * 115.38680 * 128.79141 * 20 19 18 22 22 C 1.53652 * 115.15092 * 270.19411 * 20 19 18 23 23 C 1.52066 * 120.52309 * 338.52989 * 20 19 18 24 24 H 1.09007 * 115.93119 * 151.10593 * 23 20 19 25 25 C 1.52072 * 120.02237 * 6.39015 * 23 20 19 26 26 H 1.09002 * 109.47084 * 300.00164 * 1 2 3 27 27 H 1.08995 * 109.46516 * 60.00214 * 1 2 3 28 28 H 1.08999 * 109.47174 * 180.02562 * 1 2 3 29 29 H 0.97006 * 120.00382 * 179.97438 * 7 6 4 30 30 H 0.96992 * 119.99628 * 0.02562 * 14 12 2 31 31 H 1.08998 * 109.47204 * 60.00284 * 15 14 12 32 32 H 1.09000 * 109.47675 * 299.99685 * 15 14 12 33 33 H 1.08996 * 109.61674 * 46.10546 * 18 16 15 34 34 H 1.08997 * 109.62199 * 285.55509 * 18 16 15 35 35 H 1.09008 * 109.35620 * 294.31660 * 19 18 16 36 36 H 1.08992 * 109.35943 * 174.73604 * 19 18 16 37 37 H 1.09003 * 117.53814 * 4.68858 * 22 20 19 38 38 H 1.09000 * 117.53817 * 219.44860 * 22 20 19 39 39 H 1.08998 * 109.26612 * 98.56677 * 25 23 20 40 40 H 1.09003 * 109.26482 * 218.03264 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8271 -0.4201 -5.2203 11 1 3.8065 -1.1212 -4.0079 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1194 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9403 3.6508 16 6 1.6847 -0.2193 4.9000 17 1 0.5978 -0.1462 4.8650 18 6 2.2931 1.1861 4.9680 19 6 1.5158 2.0041 5.9995 20 6 1.4904 1.2729 7.3399 21 1 1.8004 1.8648 8.2011 22 6 0.3076 0.3122 7.5373 23 6 1.7254 -0.2281 7.4054 24 1 2.1694 -0.6012 8.3284 25 6 2.1315 -0.9900 6.1535 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7089 1.1612 -3.4844 30 1 1.1487 0.5385 2.5435 31 1 3.2853 -0.9399 3.6507 32 1 1.8324 -1.9680 3.6511 33 1 2.2198 1.6642 3.9912 34 1 3.3389 1.1181 5.2676 35 1 0.4943 2.1510 5.6487 36 1 1.9951 2.9747 6.1265 37 1 -0.3682 0.1651 6.6949 38 1 -0.1549 0.2783 8.5238 39 1 3.2114 -1.1375 6.1567 40 1 1.6363 -1.9611 6.1471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600160181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:18 Heat of formation + Delta-G solvation = -42.268309 kcal Electronic energy + Delta-G solvation = -18616.963809 eV Core-core repulsion = 15817.109430 eV Total energy + Delta-G solvation = -2799.854379 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96348 -38.55312 -35.13021 -33.67641 -32.28377 -31.16380 -30.23978 -26.37699 -25.08723 -24.13003 -22.56672 -21.60475 -20.84288 -19.40434 -18.50051 -16.60438 -16.17077 -15.57246 -15.09860 -14.92252 -14.43021 -14.33294 -13.92662 -13.65792 -13.08817 -12.87901 -12.61966 -12.33974 -12.22830 -11.90286 -11.49387 -11.43262 -10.96993 -10.90189 -10.80854 -10.69896 -10.64844 -10.40996 -10.20596 -9.91998 -9.90209 -9.76510 -8.94305 -8.55539 -8.34717 -8.27234 -5.99349 -4.02247 3.38910 3.40991 3.46768 3.55809 3.81340 3.97832 4.44069 4.50456 4.58188 4.62812 4.83614 4.92375 5.08574 5.16025 5.33793 5.38032 5.42885 5.47041 5.58928 5.71899 5.73627 5.88240 5.95922 5.96525 6.00407 6.08294 6.18123 6.18783 6.34704 6.43230 6.65771 6.87040 6.97372 7.17598 7.52200 7.79777 8.03608 8.20494 8.51817 9.06587 9.32004 9.63239 11.08264 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.047867 B = 0.004159 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.815165 B = 6730.759909 C = 6999.154719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.746 5.746 15 C 0.125 3.875 16 C -0.099 4.099 17 H 0.078 0.922 18 C -0.117 4.117 19 C -0.090 4.090 20 C -0.147 4.147 21 H 0.099 0.901 22 C -0.187 4.187 23 C -0.137 4.137 24 H 0.096 0.904 25 C -0.081 4.081 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.394 0.606 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 2.497 19.238 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.424 6.424 14 N -0.401 5.401 15 C 0.001 3.999 16 C -0.118 4.118 17 H 0.096 0.904 18 C -0.155 4.155 19 C -0.127 4.127 20 C -0.165 4.165 21 H 0.117 0.883 22 C -0.224 4.224 23 C -0.155 4.155 24 H 0.114 0.886 25 C -0.119 4.119 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.228 0.772 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.825 1.874 19.001 19.111 hybrid contribution -0.044 -0.027 -0.596 0.598 sum -0.869 1.847 18.405 18.518 Atomic orbital electron populations 1.21734 0.96618 0.99748 1.00840 1.18861 0.94095 0.96806 0.89485 0.93089 1.21119 1.30905 1.12774 0.89064 0.90876 1.24947 0.95148 0.95085 0.99081 1.69865 1.37160 1.23147 1.23563 0.86511 0.79276 0.79720 0.81655 1.20218 1.21404 1.20211 1.21953 0.78471 0.84275 0.84551 1.90525 1.38084 1.26977 1.86863 1.46295 1.55436 1.32656 1.05665 1.21181 0.98943 0.95929 0.83849 1.21633 1.00691 0.95479 0.94001 0.90383 1.21673 0.99729 0.94935 0.99131 1.21070 1.00743 0.98095 0.92819 1.22245 1.03207 0.91895 0.99202 0.88306 1.23170 0.91274 1.05315 1.02679 1.21804 0.99118 0.95069 0.99488 0.88560 1.20976 1.01308 0.98070 0.91507 0.96992 0.88894 0.95063 0.92965 0.77154 0.92220 0.92328 0.91183 0.91534 0.91570 0.91645 0.88594 0.89316 0.90844 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.43 8.37 -34.44 -0.29 -14.72 16 5 H 0.07 2.23 6.75 -52.48 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.44 11.32 55.43 0.63 -24.82 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.52 12.03 7.15 -10.98 -0.08 11.95 16 13 O -0.55 -14.66 15.46 5.55 0.09 -14.58 16 14 N -0.75 -13.07 5.03 -60.29 -0.30 -13.38 16 15 C 0.13 1.86 5.08 -4.04 -0.02 1.84 16 16 C -0.10 -1.10 2.03 -90.05 -0.18 -1.28 16 17 H 0.08 0.87 7.00 -51.93 -0.36 0.50 16 18 C -0.12 -1.24 5.20 -26.64 -0.14 -1.38 16 19 C -0.09 -0.82 5.81 -26.94 -0.16 -0.98 16 20 C -0.15 -1.29 6.24 -90.91 -0.57 -1.86 16 21 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 22 C -0.19 -1.61 9.60 -26.75 -0.26 -1.87 16 23 C -0.14 -1.21 6.01 -91.93 -0.55 -1.76 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 C -0.08 -0.79 5.25 -26.80 -0.14 -0.93 16 26 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.39 6.03 7.14 -40.82 -0.29 5.74 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.80 6.99 -51.93 -0.36 0.44 16 34 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 35 H 0.07 0.60 8.04 -51.92 -0.42 0.19 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.87 7.14 -51.93 -0.37 0.50 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 314.63 15.07 4.74 4.74 Total: -1.00 -31.01 314.63 -8.91 -39.92 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.65 Total: 2.74 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -2.39 Total: -11.70 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.32 Total: -38.19 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.01 -8.91 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600160181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.347 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds