Wall clock time and date at job start Mon Mar 30 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47427 * 2 1 4 4 C 1.50700 * 109.47280 * 239.99586 * 2 1 3 5 5 H 1.08005 * 120.00195 * 240.00361 * 4 2 1 6 6 C 1.37872 * 120.00039 * 60.00317 * 4 2 1 7 7 N 1.31515 * 119.99830 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00567 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46807 * 59.99428 * 8 6 4 10 10 H 1.48490 * 109.47398 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46600 * 300.00429 * 8 6 4 12 12 C 1.50701 * 109.46643 * 119.99874 * 2 1 3 13 13 O 1.21290 * 120.00316 * 120.00066 * 12 2 1 14 14 N 1.34780 * 120.00186 * 299.99779 * 12 2 1 15 15 C 1.46501 * 119.99710 * 180.02562 * 14 12 2 16 16 C 1.53009 * 109.46495 * 180.02562 * 15 14 12 17 17 H 1.08993 * 109.76521 * 55.44872 * 16 15 14 18 18 C 1.53299 * 109.61425 * 294.99531 * 16 15 14 19 19 C 1.52885 * 108.57897 * 165.82981 * 18 16 15 20 20 C 1.52706 * 110.15205 * 54.52160 * 19 18 16 21 21 H 1.08997 * 115.38680 * 128.79141 * 20 19 18 22 22 C 1.53652 * 115.15092 * 270.19411 * 20 19 18 23 23 C 1.52066 * 120.52309 * 338.52989 * 20 19 18 24 24 H 1.09007 * 115.93119 * 151.10593 * 23 20 19 25 25 C 1.52072 * 120.02237 * 6.39015 * 23 20 19 26 26 H 1.09002 * 109.47084 * 300.00164 * 1 2 3 27 27 H 1.08995 * 109.46516 * 60.00214 * 1 2 3 28 28 H 1.08999 * 109.47174 * 180.02562 * 1 2 3 29 29 H 0.97006 * 120.00382 * 179.97438 * 7 6 4 30 30 H 0.96992 * 119.99628 * 0.02562 * 14 12 2 31 31 H 1.08998 * 109.47204 * 60.00284 * 15 14 12 32 32 H 1.09000 * 109.47675 * 299.99685 * 15 14 12 33 33 H 1.08996 * 109.61674 * 46.10546 * 18 16 15 34 34 H 1.08997 * 109.62199 * 285.55509 * 18 16 15 35 35 H 1.09008 * 109.35620 * 294.31660 * 19 18 16 36 36 H 1.08992 * 109.35943 * 174.73604 * 19 18 16 37 37 H 1.09003 * 117.53814 * 4.68858 * 22 20 19 38 38 H 1.09000 * 117.53817 * 219.44860 * 22 20 19 39 39 H 1.08998 * 109.26612 * 98.56677 * 25 23 20 40 40 H 1.09003 * 109.26482 * 218.03264 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8271 -0.4201 -5.2203 11 1 3.8065 -1.1212 -4.0079 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1194 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9403 3.6508 16 6 1.6847 -0.2193 4.9000 17 1 0.5978 -0.1462 4.8650 18 6 2.2931 1.1861 4.9680 19 6 1.5158 2.0041 5.9995 20 6 1.4904 1.2729 7.3399 21 1 1.8004 1.8648 8.2011 22 6 0.3076 0.3122 7.5373 23 6 1.7254 -0.2281 7.4054 24 1 2.1694 -0.6012 8.3284 25 6 2.1315 -0.9900 6.1535 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7089 1.1612 -3.4844 30 1 1.1487 0.5385 2.5435 31 1 3.2853 -0.9399 3.6507 32 1 1.8324 -1.9680 3.6511 33 1 2.2198 1.6642 3.9912 34 1 3.3389 1.1181 5.2676 35 1 0.4943 2.1510 5.6487 36 1 1.9951 2.9747 6.1265 37 1 -0.3682 0.1651 6.6949 38 1 -0.1549 0.2783 8.5238 39 1 3.2114 -1.1375 6.1567 40 1 1.6363 -1.9611 6.1471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600160181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:18 Heat of formation + Delta-G solvation = -60.217065 kcal Electronic energy + Delta-G solvation = -18617.742126 eV Core-core repulsion = 15817.109430 eV Total energy + Delta-G solvation = -2800.632696 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.97245 -40.12122 -36.41928 -35.74540 -33.61982 -32.35853 -31.78382 -27.60529 -27.14370 -25.01242 -24.22119 -22.56143 -21.72931 -21.08492 -19.36261 -18.37032 -17.89471 -16.81223 -16.77109 -16.24372 -16.13293 -15.37435 -15.05504 -14.83424 -14.48170 -14.31540 -14.11652 -13.53490 -13.38460 -13.10768 -12.96326 -12.82454 -12.66044 -12.58769 -12.26411 -12.17741 -11.99878 -11.77470 -11.66892 -11.26181 -11.04138 -10.60053 -10.58595 -10.48456 -10.28497 -9.92588 -8.14360 -6.24840 1.41459 1.43053 1.51683 1.95153 2.36995 2.56118 2.89279 3.15059 3.68375 3.75260 3.80219 4.04457 4.15869 4.22196 4.37736 4.38633 4.54771 4.59871 4.70096 4.74396 4.75185 4.81715 4.95232 4.98600 5.02269 5.05159 5.07515 5.18933 5.25758 5.34190 5.38618 5.42400 5.50521 5.51578 5.64797 5.76190 5.95138 6.22592 6.75400 6.87644 7.40767 7.56700 8.91255 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.047867 B = 0.004159 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.815165 B = 6730.759909 C = 6999.154719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.591 6.591 14 N -0.723 5.723 15 C 0.125 3.875 16 C -0.087 4.087 17 H 0.084 0.916 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.150 4.150 21 H 0.110 0.890 22 C -0.186 4.186 23 C -0.140 4.140 24 H 0.108 0.892 25 C -0.080 4.080 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.265 0.735 30 H 0.408 0.592 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 3.081 20.574 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.471 6.471 14 N -0.376 5.376 15 C 0.002 3.998 16 C -0.106 4.106 17 H 0.102 0.898 18 C -0.154 4.154 19 C -0.125 4.125 20 C -0.168 4.168 21 H 0.128 0.872 22 C -0.223 4.223 23 C -0.158 4.158 24 H 0.126 0.874 25 C -0.117 4.117 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.424 2.498 20.379 20.580 hybrid contribution 0.137 -0.180 -0.968 0.994 sum -1.288 2.318 19.411 19.591 Atomic orbital electron populations 1.21548 0.95034 0.99352 1.01710 1.18810 0.95363 0.95923 0.89709 0.94101 1.21271 1.31679 1.12771 0.91230 0.93439 1.25592 0.95178 0.95754 1.01391 1.69941 1.37137 1.23563 1.24363 0.85656 0.78664 0.78736 0.78849 1.20191 1.19838 1.20203 1.21559 0.78236 0.83690 0.85741 1.90502 1.40121 1.28797 1.87636 1.46018 1.54216 1.32523 1.04878 1.21345 0.98505 0.95887 0.84096 1.21543 1.00842 0.95593 0.92606 0.89812 1.21656 0.99932 0.94609 0.99214 1.21053 1.00602 0.98260 0.92595 1.22306 1.03346 0.91860 0.99249 0.87199 1.23216 0.91044 1.04903 1.03143 1.21815 0.99611 0.95125 0.99285 0.87421 1.20956 1.01458 0.98119 0.91206 0.92971 0.91068 0.95948 0.92581 0.75526 0.93068 0.93071 0.92199 0.91703 0.91392 0.90819 0.89107 0.88190 0.90744 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.18 2.64 -12.28 -0.03 1.15 16 3 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -31.31 8.37 25.60 0.21 -31.09 16 5 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.91 -51.52 11.32 21.45 0.24 -51.28 16 8 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.52 24.32 7.15 87.66 0.63 24.95 16 13 O -0.59 -32.36 15.46 -3.06 -0.05 -32.40 16 14 N -0.72 -24.82 5.03 -463.03 -2.33 -27.15 16 15 C 0.13 3.63 5.08 86.38 0.44 4.07 16 16 C -0.09 -1.79 2.03 -10.43 -0.02 -1.81 16 17 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 18 C -0.12 -2.26 5.20 30.66 0.16 -2.11 16 19 C -0.09 -1.40 5.81 30.46 0.18 -1.23 16 20 C -0.15 -2.21 6.24 -10.98 -0.07 -2.28 16 21 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 22 C -0.19 -2.71 9.60 30.58 0.29 -2.41 16 23 C -0.14 -2.14 6.01 -11.64 -0.07 -2.21 16 24 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 25 C -0.08 -1.41 5.25 30.55 0.16 -1.25 16 26 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 27 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 30 H 0.41 11.81 7.14 -92.71 -0.66 11.15 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.28 6.99 -2.39 -0.02 1.26 16 34 H 0.06 1.29 8.02 -2.39 -0.02 1.27 16 35 H 0.07 1.07 8.04 -2.38 -0.02 1.05 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.42 7.14 -2.39 -0.02 1.41 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -66.80 314.63 3.21 -63.59 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.35 Total: 17.26 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 2.96 Total: -17.44 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.09 Total: -78.43 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.05 Total: -32.40 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.80 3.21 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600160181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.373 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds