Wall clock time and date at job start Mon Mar 30 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 C 1.34516 * 125.79188 * 259.99881 * 4 2 1 6 6 C 1.41387 * 106.84240 * 179.97438 * 5 4 2 7 7 C 1.34515 * 106.83885 * 0.02562 * 6 5 4 8 8 O 1.34304 * 108.42342 * 359.73501 * 7 6 5 9 9 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 10 10 C 1.46893 * 111.00136 * 306.04405 * 9 2 1 11 11 C 1.46901 * 110.99853 * 70.00100 * 9 2 1 12 12 C 1.53000 * 109.46769 * 170.00087 * 11 9 2 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00339 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00310 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00473 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47245 * 89.99913 * 19 17 15 21 21 H 1.48508 * 109.47285 * 210.00131 * 19 17 15 22 22 H 1.48499 * 109.47170 * 330.00074 * 19 17 15 23 23 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 24 24 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 26 26 H 1.08001 * 126.57714 * 359.97108 * 5 4 2 27 27 H 1.08001 * 126.57868 * 180.02562 * 6 5 4 28 28 H 1.08002 * 125.78403 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47439 * 183.95618 * 10 9 2 30 30 H 1.08997 * 109.47257 * 303.95746 * 10 9 2 31 31 H 1.09006 * 109.46808 * 63.95302 * 10 9 2 32 32 H 1.09002 * 109.47401 * 49.99794 * 11 9 2 33 33 H 1.09001 * 109.46874 * 289.99807 * 11 9 2 34 34 H 1.09001 * 109.47194 * 299.99524 * 12 11 9 35 35 H 1.08992 * 109.47399 * 59.99697 * 12 11 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 37 37 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 38 38 H 1.08992 * 109.47098 * 299.99158 * 14 13 12 39 39 H 1.09001 * 109.47583 * 60.00267 * 14 13 12 40 40 H 0.96998 * 120.00187 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4733 -0.1190 2.3553 6 6 2.8433 -1.1543 3.2443 7 6 2.6070 -2.3163 2.6093 8 8 2.1107 -2.0414 1.3919 9 7 2.0197 -0.6925 -1.1995 10 6 1.4344 -2.0355 -1.3078 11 6 1.7529 0.0972 -2.4091 12 6 2.4885 -0.5257 -3.5973 13 6 2.2111 0.2972 -4.8570 14 6 2.9462 -0.3261 -6.0453 15 6 2.6725 0.4841 -7.2863 16 1 2.0381 1.3566 -7.2326 17 6 3.2328 0.1122 -8.4899 18 7 4.0064 -0.9494 -8.5550 19 14 2.8942 1.1168 -10.0279 20 1 3.9226 2.1798 -10.1612 21 1 2.9412 0.2304 -11.2185 22 1 1.5496 1.7389 -9.9268 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.5332 0.9428 2.5433 27 1 3.2397 -1.0350 4.2418 28 1 2.7818 -3.3030 3.0121 29 1 1.8665 -2.5521 -2.1648 30 1 1.6467 -2.5987 -0.3992 31 1 0.3556 -1.9520 -1.4399 32 1 2.1025 1.1189 -2.2604 33 1 0.6814 0.1053 -2.6087 34 1 3.5600 -0.5337 -3.3977 35 1 2.1389 -1.5473 -3.7459 36 1 1.1397 0.3056 -5.0569 37 1 2.5610 1.3187 -4.7081 38 1 4.0176 -0.3349 -5.8458 39 1 2.5958 -1.3475 -6.1942 40 1 4.4003 -1.2113 -9.4018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:07 Heat of formation + Delta-G solvation = 2.964866 kcal Electronic energy + Delta-G solvation = -18102.770019 eV Core-core repulsion = 15304.877097 eV Total energy + Delta-G solvation = -2797.892921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.68274 -38.41722 -34.69084 -33.22511 -32.57106 -31.07332 -28.59932 -28.38449 -26.34391 -24.62065 -22.69674 -21.83233 -20.77145 -19.98373 -19.90622 -17.31941 -16.23136 -16.13787 -15.74721 -15.29871 -15.07972 -14.42883 -13.97830 -13.85010 -13.40875 -13.03982 -12.78226 -12.55166 -12.38335 -12.26510 -11.91762 -11.69338 -11.53734 -11.34444 -11.10638 -10.93551 -10.47049 -10.44380 -10.32648 -10.00810 -9.57612 -9.23777 -8.98409 -8.62380 -8.30411 -8.22918 -5.95378 -3.97570 1.65603 2.51668 2.89629 3.34278 3.40243 3.43632 3.91468 4.46319 4.49589 4.81075 4.86858 4.99154 5.06603 5.26189 5.34883 5.40085 5.42987 5.54195 5.59905 5.66819 5.71913 5.79734 5.85566 5.91334 6.00119 6.17331 6.24884 6.28288 6.39135 6.55562 6.84250 6.96755 7.02385 7.09450 7.13303 7.27008 7.73948 7.90225 8.06023 8.48631 9.10047 9.66146 11.15996 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.052426 B = 0.003213 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.955962 B = 8711.742429 C = 8903.563348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.158 3.842 3 H 0.109 0.891 4 C 0.017 3.983 5 C -0.216 4.216 6 C -0.213 4.213 7 C -0.052 4.052 8 O -0.165 6.165 9 N -0.534 5.534 10 C 0.011 3.989 11 C 0.055 3.945 12 C -0.114 4.114 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.199 0.801 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 -0.553 22.837 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.049 3.951 3 H 0.127 0.873 4 C -0.034 4.034 5 C -0.236 4.236 6 C -0.232 4.232 7 C -0.119 4.119 8 O -0.061 6.061 9 N -0.257 5.257 10 C -0.137 4.137 11 C -0.072 4.072 12 C -0.151 4.151 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.215 0.785 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.175 -0.923 22.525 23.131 hybrid contribution -0.834 0.649 -0.691 1.262 sum -6.009 -0.274 21.835 22.648 Atomic orbital electron populations 1.22504 0.95963 1.03126 1.02927 1.20308 0.92994 0.96554 0.85261 0.87349 1.22356 1.03247 0.80540 0.97288 1.21509 1.07337 1.00500 0.94207 1.21770 1.07486 0.92304 1.01665 1.24056 1.03300 1.00332 0.84234 1.84115 1.64635 1.24700 1.32668 1.62283 1.58254 1.03316 1.01862 1.22682 0.97163 0.90418 1.03428 1.22296 0.98520 0.97212 0.89211 1.21669 1.00524 0.99540 0.93406 1.21599 1.00077 0.98437 0.94588 1.19085 0.95437 0.95899 0.91155 1.21295 1.29455 1.11606 0.93453 0.92786 1.25036 0.95275 0.95202 0.99043 1.69971 1.32616 1.25136 1.25842 0.86614 0.78629 0.80042 0.82828 1.20685 1.21254 1.19928 0.91195 0.91667 0.91704 0.83673 0.83741 0.78463 0.90619 0.90332 0.95299 0.90921 0.94665 0.91665 0.92483 0.93706 0.93457 0.96609 0.96751 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 8.42 37.16 0.31 -1.52 16 2 C 0.16 1.78 2.78 -68.86 -0.19 1.59 16 3 H 0.11 1.11 7.92 -51.93 -0.41 0.70 16 4 C 0.02 0.20 6.03 -35.63 -0.21 -0.02 16 5 C -0.22 -2.31 10.80 -39.70 -0.43 -2.74 16 6 C -0.21 -2.07 10.91 -39.70 -0.43 -2.50 16 7 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 8 O -0.17 -1.99 7.80 5.69 0.04 -1.95 16 9 N -0.53 -7.18 4.70 -236.28 -1.11 -8.30 16 10 C 0.01 0.14 8.45 60.06 0.51 0.64 16 11 C 0.05 0.78 4.53 -3.82 -0.02 0.76 16 12 C -0.11 -1.98 5.14 -26.73 -0.14 -2.12 16 13 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.07 0.68 6.91 -51.93 -0.36 0.32 16 24 H 0.06 0.67 6.42 -51.93 -0.33 0.34 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.08 1.03 6.47 -51.93 -0.34 0.70 16 30 H 0.08 0.99 5.07 -51.93 -0.26 0.73 16 31 H 0.03 0.35 6.46 -51.93 -0.34 0.01 16 32 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 33 H 0.04 0.48 7.06 -51.93 -0.37 0.12 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.01 6.55 -51.93 -0.34 0.66 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -31.73 320.35 -7.96 -39.69 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.50 Total: -2.61 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -0.93 Total: -21.87 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.37 Total: -35.05 kcal Atomic # 8 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.73 -7.96 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.654 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds