Wall clock time and date at job start Mon Mar 30 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 C 1.34516 * 125.79188 * 259.99881 * 4 2 1 6 6 C 1.41387 * 106.84240 * 179.97438 * 5 4 2 7 7 C 1.34515 * 106.83885 * 0.02562 * 6 5 4 8 8 O 1.34304 * 108.42342 * 359.73501 * 7 6 5 9 9 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 10 10 C 1.46893 * 111.00136 * 306.04405 * 9 2 1 11 11 C 1.46901 * 110.99853 * 70.00100 * 9 2 1 12 12 C 1.53000 * 109.46769 * 170.00087 * 11 9 2 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00339 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00310 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00473 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47245 * 89.99913 * 19 17 15 21 21 H 1.48508 * 109.47285 * 210.00131 * 19 17 15 22 22 H 1.48499 * 109.47170 * 330.00074 * 19 17 15 23 23 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 24 24 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 26 26 H 1.08001 * 126.57714 * 359.97108 * 5 4 2 27 27 H 1.08001 * 126.57868 * 180.02562 * 6 5 4 28 28 H 1.08002 * 125.78403 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47439 * 183.95618 * 10 9 2 30 30 H 1.08997 * 109.47257 * 303.95746 * 10 9 2 31 31 H 1.09006 * 109.46808 * 63.95302 * 10 9 2 32 32 H 1.09002 * 109.47401 * 49.99794 * 11 9 2 33 33 H 1.09001 * 109.46874 * 289.99807 * 11 9 2 34 34 H 1.09001 * 109.47194 * 299.99524 * 12 11 9 35 35 H 1.08992 * 109.47399 * 59.99697 * 12 11 9 36 36 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 37 37 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 38 38 H 1.08992 * 109.47098 * 299.99158 * 14 13 12 39 39 H 1.09001 * 109.47583 * 60.00267 * 14 13 12 40 40 H 0.96998 * 120.00187 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4733 -0.1190 2.3553 6 6 2.8433 -1.1543 3.2443 7 6 2.6070 -2.3163 2.6093 8 8 2.1107 -2.0414 1.3919 9 7 2.0197 -0.6925 -1.1995 10 6 1.4344 -2.0355 -1.3078 11 6 1.7529 0.0972 -2.4091 12 6 2.4885 -0.5257 -3.5973 13 6 2.2111 0.2972 -4.8570 14 6 2.9462 -0.3261 -6.0453 15 6 2.6725 0.4841 -7.2863 16 1 2.0381 1.3566 -7.2326 17 6 3.2328 0.1122 -8.4899 18 7 4.0064 -0.9494 -8.5550 19 14 2.8942 1.1168 -10.0279 20 1 3.9226 2.1798 -10.1612 21 1 2.9412 0.2304 -11.2185 22 1 1.5496 1.7389 -9.9268 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.5332 0.9428 2.5433 27 1 3.2397 -1.0350 4.2418 28 1 2.7818 -3.3030 3.0121 29 1 1.8665 -2.5521 -2.1648 30 1 1.6467 -2.5987 -0.3992 31 1 0.3556 -1.9520 -1.4399 32 1 2.1025 1.1189 -2.2604 33 1 0.6814 0.1053 -2.6087 34 1 3.5600 -0.5337 -3.3977 35 1 2.1389 -1.5473 -3.7459 36 1 1.1397 0.3056 -5.0569 37 1 2.5610 1.3187 -4.7081 38 1 4.0176 -0.3349 -5.8458 39 1 2.5958 -1.3475 -6.1942 40 1 4.4003 -1.2113 -9.4018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:07 Heat of formation + Delta-G solvation = -15.976427 kcal Electronic energy + Delta-G solvation = -18103.591375 eV Core-core repulsion = 15304.877097 eV Total energy + Delta-G solvation = -2798.714277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.46336 -39.44597 -36.40989 -34.52815 -33.92790 -32.34447 -30.00836 -29.32728 -27.62382 -26.13559 -24.04985 -22.62117 -22.14386 -21.48837 -20.81721 -18.44188 -18.06961 -17.02414 -16.77346 -16.52057 -16.49629 -16.01474 -15.18611 -14.84922 -14.54831 -14.26936 -13.84696 -13.75515 -13.60975 -13.47531 -13.20037 -13.05352 -12.91406 -12.70794 -12.39323 -12.36113 -12.10113 -12.06254 -11.92205 -11.32130 -11.25317 -10.99177 -10.77326 -10.54768 -9.47476 -9.16351 -8.19134 -6.30777 0.87466 1.39965 1.41861 1.52931 1.76736 2.16111 2.41449 2.91597 3.13575 3.67355 3.96167 4.09384 4.15126 4.24134 4.26098 4.35580 4.41082 4.51828 4.56454 4.66119 4.72466 4.82953 4.85893 4.87721 4.98368 5.03447 5.08356 5.17375 5.23878 5.29391 5.35188 5.42387 5.56687 5.67108 5.78817 5.87873 6.04107 6.06705 6.26539 6.33086 6.87140 7.38632 8.92887 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.052426 B = 0.003213 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.955962 B = 8711.742429 C = 8903.563348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.158 3.842 3 H 0.119 0.881 4 C -0.008 4.008 5 C -0.221 4.221 6 C -0.224 4.224 7 C -0.056 4.056 8 O -0.185 6.185 9 N -0.547 5.547 10 C 0.014 3.986 11 C 0.065 3.935 12 C -0.104 4.104 13 C -0.095 4.095 14 C 0.023 3.977 15 C -0.544 4.544 16 H 0.061 0.939 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.262 1.262 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.229 0.771 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.054 0.946 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 0.669 23.732 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.050 3.950 3 H 0.136 0.864 4 C -0.058 4.058 5 C -0.240 4.240 6 C -0.243 4.243 7 C -0.123 4.123 8 O -0.081 6.081 9 N -0.271 5.271 10 C -0.133 4.133 11 C -0.062 4.062 12 C -0.142 4.142 13 C -0.134 4.134 14 C -0.014 4.014 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.186 1.186 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.178 0.822 27 H 0.184 0.816 28 H 0.246 0.754 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.072 0.307 23.443 24.219 hybrid contribution -0.509 0.211 -0.893 1.049 sum -6.581 0.519 22.550 23.497 Atomic orbital electron populations 1.22440 0.94868 1.02860 1.03670 1.20379 0.93882 0.96700 0.84059 0.86355 1.22498 1.04721 0.80731 0.97899 1.21842 1.06531 1.01575 0.94090 1.22123 1.07548 0.92044 1.02607 1.24776 1.02182 1.01917 0.83392 1.84082 1.65208 1.24976 1.33863 1.62195 1.59099 1.03521 1.02278 1.22625 0.97490 0.90323 1.02905 1.22090 0.98438 0.97377 0.88273 1.21491 1.00180 0.98948 0.93560 1.21394 0.99527 0.98705 0.93724 1.19017 0.94293 0.94799 0.93310 1.21757 1.29686 1.12121 0.94612 0.92031 1.26041 0.94832 0.96362 1.02910 1.70114 1.33615 1.26910 1.26972 0.85422 0.79103 0.78359 0.78011 1.19709 1.20758 1.18578 0.90991 0.92406 0.90349 0.82226 0.81618 0.75431 0.92068 0.90102 0.94510 0.89790 0.93722 0.93008 0.93122 0.92987 0.92752 0.99413 0.99416 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.42 71.98 0.61 -2.61 16 2 C 0.16 3.34 2.78 44.17 0.12 3.46 16 3 H 0.12 2.21 7.92 -2.39 -0.02 2.19 16 4 C -0.01 -0.18 6.03 24.83 0.15 -0.03 16 5 C -0.22 -4.36 10.80 22.19 0.24 -4.12 16 6 C -0.22 -3.92 10.91 22.19 0.24 -3.68 16 7 C -0.06 -0.98 12.09 66.97 0.81 -0.17 16 8 O -0.18 -4.26 7.80 -2.56 -0.02 -4.28 16 9 N -0.55 -14.25 4.70 -901.46 -4.24 -18.49 16 10 C 0.01 0.36 8.45 127.69 1.08 1.44 16 11 C 0.07 1.78 4.53 86.30 0.39 2.17 16 12 C -0.10 -3.64 5.14 30.59 0.16 -3.48 16 13 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 14 C 0.02 1.25 4.97 29.85 0.15 1.40 16 15 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 17 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 18 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 19 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 H 0.07 1.25 6.91 -2.39 -0.02 1.23 16 24 H 0.06 1.12 6.42 -2.39 -0.02 1.10 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.23 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.06 1.70 6.47 -2.39 -0.02 1.69 16 30 H 0.08 2.03 5.07 -2.39 -0.01 2.02 16 31 H 0.04 0.86 6.46 -2.38 -0.02 0.85 16 32 H 0.08 2.10 7.93 -2.39 -0.02 2.08 16 33 H 0.04 1.14 7.06 -2.39 -0.02 1.12 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.82 6.55 -2.39 -0.02 1.81 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.44 320.35 3.85 -64.59 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.00 Total: 10.13 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 4.80 Total: -40.74 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -3.95 Total: -76.67 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.02 Total: -4.28 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.44 3.85 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.616 kcal (2) G-P(sol) polarization free energy of solvation -68.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds